Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G008300 Gossypium raimondii HOM05D000603 ORTHO05D047483 1.3e-64 249.6 133 100.0
Gorai.011G118600 Gossypium raimondii HOM05D000431 ORTHO05D010836 2.5e-26 122.5 65 100.0
Gohir.D05G327650 Gossypium hirsutum HOM05D001725 ORTHO05D001757 1.4e-24 116.7 71 93.0
Gohir.D07G044650 Gossypium hirsutum HOM05D000603 ORTHO05D047483 1.1e-21 107.1 60 95.0
Gohir.D03G080100 Gossypium hirsutum HOM05D001725 ORTHO05D218613 3.1e-21 105.5 82 78.0
Duzib235G1526 Durio zibethinus HOM05D001725 ORTHO05D001757 4.7e-09 65.1 45 86.7
Ciclev10005827m.g Citrus clementina HOM05D000603 ORTHO05D003510 8.0e-09 64.3 40 82.5
Cfa014755 Carpinus fangiana HOM05D000603 ORTHO05D003510 1.4e-08 63.5 66 57.6
Duzib052G0416 Durio zibethinus HOM05D000603 ORTHO05D003510 1.4e-08 63.5 66 57.6
Duzib151G0996 Durio zibethinus HOM05D000603 ORTHO05D003510 1.4e-08 63.5 66 57.6
Gohir.D02G047100 Gossypium hirsutum HOM05D000603 ORTHO05D003510 1.4e-08 63.5 66 57.6
Gorai.005G052100 Gossypium raimondii HOM05D000603 ORTHO05D003510 1.4e-08 63.5 66 57.6
QL06p020036 Quercus lobata HOM05D000603 ORTHO05D003510 1.4e-08 63.5 47 70.2
Haze_11431 Corylus avellana HOM05D006602 ORTHO05D003510 1.8e-08 63.2 71 54.9
CiPaw.01G180700 Carya illinoinensis HOM05D000603 ORTHO05D003510 2.3e-08 62.8 66 57.6
Duzib212G0907 Durio zibethinus HOM05D000603 ORTHO05D003510 2.3e-08 62.8 66 57.6
GSVIVG01027872001 Vitis vinifera HOM05D000603 ORTHO05D003510 3.1e-08 62.4 66 57.6
Sed0008665 Sechium edule HOM05D000603 ORTHO05D003510 5.2e-08 61.6 57 63.2
Thecc.04G260200 Theobroma cacao HOM05D000603 ORTHO05D003510 5.2e-08 61.6 66 56.1
arahy.Tifrunner.gnm1.ann1.6LKI21 Arachis hypogaea HOM05D000603 ORTHO05D003510 6.8e-08 61.2 57 63.2
Gohir.A02G041300 Gossypium hirsutum HOM05D000603 ORTHO05D003510 6.8e-08 61.2 66 56.1
Sed0021798 Sechium edule HOM05D000603 ORTHO05D003510 6.8e-08 61.2 57 63.2
arahy.Tifrunner.gnm1.ann1.1GQ87W Arachis hypogaea HOM05D000603 ORTHO05D003510 8.9e-08 60.8 60 60.0
Thhalv10017201m.g Eutrema salsugineum HOM05D000603 ORTHO05D003510 1.2e-07 60.5 57 63.2
Lj1A71T68 Lonicera japonica HOM05D000603 ORTHO05D003510 1.2e-07 60.5 66 56.1
MD16G1223900 Malus domestica HOM05D000603 ORTHO05D003510 1.2e-07 60.5 57 63.2
SalBow6G0648 Salvia bowleyana HOM05D000603 ORTHO05D003510 1.2e-07 60.5 66 56.1
Eucgr.H02992 Eucalyptus grandis HOM05D000603 ORTHO05D003510 1.5e-07 60.1 57 61.4
Hma1.2p1_1112F.1_g258550 Hydrangea macrophylla HOM05D000603 ORTHO05D003510 1.5e-07 60.1 66 56.1
Nitab4.5_0000326g0250 Nicotiana tabacum HOM05D000603 ORTHO05D003510 1.5e-07 60.1 66 56.1
Nitab4.5_0006980g0070 Nicotiana tabacum HOM05D000603 ORTHO05D003510 1.5e-07 60.1 66 56.1
Prupe.1G045300 Prunus persica HOM05D000603 ORTHO05D003510 1.5e-07 60.1 66 54.5
Rhsim13G0038800 Rhododendron simsii HOM05D000603 ORTHO05D003510 1.5e-07 60.1 66 56.1
SalBow4G3137 Salvia bowleyana HOM05D000603 ORTHO05D003510 1.5e-07 60.1 66 56.1
AL4G29100 Arabidopsis lyrata HOM05D000603 ORTHO05D003510 2.0e-07 59.7 54 66.7
MSTRG.17507 Avicennia marina HOM05D000603 ORTHO05D003510 2.0e-07 59.7 66 56.1
MSTRG.21472 Avicennia marina HOM05D000603 ORTHO05D003510 2.0e-07 59.7 66 56.1
BcaB02g10561 Brassica carinata HOM05D000603 ORTHO05D003510 2.0e-07 59.7 54 66.7
BcaB06g28688 Brassica carinata HOM05D000603 ORTHO05D003510 2.0e-07 59.7 54 66.7
BcaC02g07822 Brassica carinata HOM05D000603 ORTHO05D003510 2.0e-07 59.7 54 66.7
BcaC02g11430 Brassica carinata HOM05D000603 ORTHO05D003510 2.0e-07 59.7 54 66.7
A04p25740 Brassica napus HOM05D000603 ORTHO05D003510 2.0e-07 59.7 54 66.7
A05p12090 Brassica napus HOM05D000603 ORTHO05D003510 2.0e-07 59.7 54 66.7
C04p15660 Brassica napus HOM05D000603 ORTHO05D003510 2.0e-07 59.7 54 66.7
C04p62960 Brassica napus HOM05D000603 ORTHO05D003510 2.0e-07 59.7 54 66.7
BolC3t14572H Brassica oleracea HOM05D000603 ORTHO05D003510 2.0e-07 59.7 54 66.7
BolC4t23135H Brassica oleracea HOM05D000603 ORTHO05D003510 2.0e-07 59.7 54 66.7
BraA04t18077Z Brassica rapa HOM05D000603 ORTHO05D003510 2.0e-07 59.7 54 66.7
BraA05t20153Z Brassica rapa HOM05D000603 ORTHO05D003510 2.0e-07 59.7 54 66.7
CANSAT78G1217 Cannabis sativa HOM05D000603 ORTHO05D003510 2.0e-07 59.7 57 61.4
CARHR127440 Cardamine hirsuta HOM05D000603 ORTHO05D003510 2.0e-07 59.7 54 66.7
FvH4_7g07460 Fragaria vesca HOM05D000603 ORTHO05D003510 2.0e-07 59.7 66 54.5
FAN01G0818 Fragaria x ananassa HOM05D000603 ORTHO05D003510 2.0e-07 59.7 66 54.5
FAN03G2193 Fragaria x ananassa HOM05D000603 ORTHO05D003510 2.0e-07 59.7 66 54.5
FAN06G4756 Fragaria x ananassa HOM05D000603 ORTHO05D003510 2.0e-07 59.7 66 54.5
FAN10G1281 Fragaria x ananassa HOM05D000603 ORTHO05D003510 2.0e-07 59.7 66 54.5
Os04g0601800 Oryza sativa ssp. japonica HOM05D000603 ORTHO05D003510 2.0e-07 59.7 57 61.4
RcHm_v2.0_Chr7g0223791 Rosa chinensis HOM05D000603 ORTHO05D003510 2.0e-07 59.7 66 54.5
Sp4g15760 Schrenkiella parvula HOM05D000603 ORTHO05D003510 2.0e-07 59.7 54 66.7
Zm00001eb430340 Zea mays HOM05D000603 ORTHO05D003510 2.0e-07 59.7 57 61.4
BolC4t27774H Brassica oleracea HOM05D000603 ORTHO05D003510 2.6e-07 59.3 54 66.7
ClCG05G004150 Citrullus lanatus HOM05D000603 ORTHO05D003510 2.6e-07 59.3 66 53.0
Cc01_g17990 Coffea canephora HOM05D000603 ORTHO05D003510 2.6e-07 59.3 66 54.5
Nn2g15296 Nelumbo nucifera HOM05D000603 ORTHO05D003510 2.6e-07 59.3 38 78.9
MD13G1218600 Malus domestica HOM05D000603 ORTHO05D003510 3.4e-07 58.9 66 53.0
CSS0026371 Camellia sinensis var. sinensis HOM05D000603 ORTHO05D003510 4.4e-07 58.5 66 54.5
CSS0027755 Camellia sinensis var. sinensis HOM05D000603 ORTHO05D003510 4.4e-07 58.5 66 54.5
CAN.G941.5 Capsicum annuum HOM05D000603 ORTHO05D003510 4.4e-07 58.5 61 60.7
Cpa.g.sc44.22 Carica papaya HOM05D000603 ORTHO05D003510 4.4e-07 58.5 66 54.5
ECA236G2156 Erigeron canadensis HOM05D000603 ORTHO05D003510 4.4e-07 58.5 57 61.4
MBI07_g22363_MAGBIO Magnolia biondii HOM05D000603 ORTHO05D003510 4.4e-07 58.5 57 61.4
MBI10_g19237_MAGBIO Magnolia biondii HOM05D000603 ORTHO05D003510 4.4e-07 58.5 57 61.4
Oeu035745.1 Olea europaea HOM05D000603 ORTHO05D003510 4.4e-07 58.5 57 61.4
Oeu052059.1 Olea europaea HOM05D000603 ORTHO05D003510 4.4e-07 58.5 57 61.4
Peaxi162Scf00013g01241 Petunia axillaris HOM05D000603 ORTHO05D003510 4.4e-07 58.5 66 54.5
TAR365G0926 Trochodendron aralioides HOM05D000603 ORTHO05D003510 4.4e-07 58.5 57 61.4
TAR636G0029 Trochodendron aralioides HOM05D000603 ORTHO05D003510 4.4e-07 58.5 57 61.4
EL10Ac7g17653 Beta vulgaris HOM05D000603 ORTHO05D003510 5.8e-07 58.2 66 54.5
Nitab4.5_0000917g0100 Nicotiana tabacum HOM05D000603 ORTHO05D003510 5.8e-07 58.2 57 61.4
Nitab4.5_0011126g0010 Nicotiana tabacum HOM05D000603 ORTHO05D003510 5.8e-07 58.2 57 61.4
Os04g0602000 Oryza sativa ssp. japonica HOM05D000603 ORTHO05D003510 5.8e-07 58.2 57 59.6
SGA_v2.0_scaffold138G35200 Striga asiatica HOM05D000603 ORTHO05D003510 5.8e-07 58.2 66 54.5
Carub.0004s1506 Capsella rubella HOM05D000603 ORTHO05D003510 7.5e-07 57.8 51 66.7
Migut.D00461 Erythranthe guttata HOM05D000603 ORTHO05D003510 7.5e-07 57.8 66 54.5
Ah.15g092730 Amaranthus hybridus HOM05D000603 ORTHO05D003510 9.8e-07 57.4 71 50.7
ATR0736G224 Amborella trichopoda HOM05D000603 ORTHO05D003510 9.8e-07 57.4 57 59.6
CDE04G3676 Ceratophyllum demersum HOM05D000603 ORTHO05D003510 9.8e-07 57.4 57 59.6
Medtr1g041745 Medicago truncatula HOM05D000603 ORTHO05D003510 9.8e-07 57.4 57 59.6
Hund05472 Selenicereus undatus HOM05D000603 ORTHO05D003510 9.8e-07 57.4 66 53.0
TPR.G10060 Trifolium pratense HOM05D000603 ORTHO05D003510 9.8e-07 57.4 57 59.6
Aa31LG5G3860 Aethionema arabicum HOM05D000603 ORTHO05D003510 1.3e-06 57.0 47 68.1
CDE12G0020 Ceratophyllum demersum HOM05D000603 ORTHO05D003510 1.3e-06 57.0 57 59.6
AUR62025470 Chenopodium quinoa HOM05D000603 ORTHO05D003510 1.3e-06 57.0 66 53.0
Ca_12139_v3 Cicer arietinum L. HOM05D000603 ORTHO05D003510 1.3e-06 57.0 66 53.0
Os06g0116600 Oryza sativa ssp. japonica HOM05D000603 ORTHO05D003510 1.3e-06 57.0 57 59.6
Solyc06g008220.4 Solanum lycopersicum HOM05D000603 ORTHO05D003510 1.3e-06 57.0 57 59.6
Sopen06g003080 Solanum pennellii HOM05D000603 ORTHO05D003510 1.3e-06 57.0 57 59.6
THA.LOC104826090 Tarenaya hassleriana HOM05D000603 ORTHO05D003510 1.3e-06 57.0 57 59.6
Actinidia30139 Actinidia chinensis HOM05D000603 ORTHO05D003510 1.7e-06 56.6 57 59.6
Lalb_Chr06g0169261 Lupinus albus HOM05D000603 ORTHO05D003510 1.7e-06 56.6 66 53.0
PSO161G0015 Papaver somniferum HOM05D000603 ORTHO05D003510 1.7e-06 56.6 57 59.6
PGSC0003DMG400014699 Solanum tuberosum HOM05D000603 ORTHO05D003510 1.7e-06 56.6 57 59.6
AUR62008768 Chenopodium quinoa HOM05D000603 ORTHO05D003510 2.2e-06 56.2 65 53.8
Dinv16380 Davidia involucrata HOM05D000603 ORTHO05D003510 2.2e-06 56.2 66 51.5
Manes.12G132200 Manihot esculenta HOM05D000603 ORTHO05D003510 2.2e-06 56.2 51 66.7
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 2.9e-06 55.8 57 56.1
CsaV3_3G011870 Cucumis sativus L. HOM05D000603 ORTHO05D003510 2.9e-06 55.8 57 56.1
Glyma.10G183800 Glycine max HOM05D000603 ORTHO05D003510 2.9e-06 55.8 51 66.7
Glyma.20G206400 Glycine max HOM05D000603 ORTHO05D003510 2.9e-06 55.8 51 66.7
Lsat_1_v5_gn_8_92140 Lactuca sativa HOM05D000603 ORTHO05D003510 2.9e-06 55.8 57 57.9
Oeu036261.1 Olea europaea HOM05D000603 ORTHO05D003510 2.9e-06 55.8 57 59.6
Phvul.004G088594 Phaseolus vulgaris HOM05D000603 ORTHO05D003510 2.9e-06 55.8 51 66.7
VMungo0720G1361 Vigna mungo HOM05D000603 ORTHO05D003510 2.9e-06 55.8 51 66.7
Zm00001eb378800 Zea mays HOM05D000603 ORTHO05D003510 2.9e-06 55.8 57 57.9
Glyma.10G005100 Glycine max HOM05D000603 ORTHO05D003510 3.7e-06 55.5 57 57.9
Psat6g124560 Pisum sativum HOM05D000603 ORTHO05D003510 3.7e-06 55.5 57 57.9
unitig_8.g3071 Utricularia gibba HOM05D000603 ORTHO05D003510 3.7e-06 55.5 57 57.9
Lalb_Chr03g0037321 Lupinus albus HOM05D000603 ORTHO05D003510 4.9e-06 55.1 50 66.0
Lalb_Chr21g0312231 Lupinus albus HOM05D000603 ORTHO05D003510 4.9e-06 55.1 50 66.0
Potri.008G169900 Populus trichocarpa HOM05D000603 ORTHO05D003510 4.9e-06 55.1 51 64.7
PSO478G2611 Papaver somniferum HOM05D000603 ORTHO05D003510 6.4e-06 54.7 57 57.9
Sabra08G0129800 Salix brachista HOM05D000603 ORTHO05D003510 6.4e-06 54.7 34 82.4
GSVIVG01028387001 Vitis vinifera HOM05D000603 ORTHO05D003510 6.4e-06 54.7 66 50.0
TPR.G25166 Trifolium pratense HOM05D000603 ORTHO05D003510 8.3e-06 54.3 50 66.0
TAR365G1020 Trochodendron aralioides HOM05D000603 ORTHO05D003510 8.3e-06 54.3 38 76.3


User provided reference genes

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