Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 4.9e-241 837.4 427 100.0
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.2e-239 832.8 427 99.3
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.2e-233 812.0 427 96.5
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 3.5e-183 645.2 428 78.5
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 2.9e-177 625.5 427 76.3
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 1.4e-168 596.7 427 73.3
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.1e-152 543.9 427 67.7
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 3.2e-152 542.3 427 67.4
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 6.5e-145 518.1 427 65.3
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 1.0e-142 510.8 351 77.2
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 1.2e-125 454.1 427 56.2
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 2.8e-124 449.5 427 56.2
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 1.6e-122 443.7 427 56.7
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 2.9e-121 439.5 421 56.5
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 7.3e-120 434.9 425 55.1
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 1.8e-118 430.3 427 54.6
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 2.0e-114 416.8 445 53.9
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 2.0e-114 416.8 440 53.4
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 5.0e-113 412.1 428 52.1
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 3.3e-112 409.5 430 52.3
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 4.3e-112 409.1 434 52.8
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 5.6e-112 408.7 439 52.6
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 3.6e-111 406.0 427 53.9
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.1e-107 394.4 429 52.0
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.4e-107 394.0 425 51.8
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 2.1e-106 390.2 427 50.4
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 3.0e-105 386.3 428 52.6
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 1.1e-104 384.4 425 49.9
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.5e-104 383.3 424 50.5
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 4.3e-104 382.5 446 49.6
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 5.6e-104 382.1 424 50.5
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.8e-102 377.1 424 50.0
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 6.8e-102 375.2 424 50.0
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 1.5e-101 374.0 437 49.2
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.4e-101 372.9 424 49.5
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 1.3e-100 370.9 436 48.9
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.9e-100 369.8 424 49.5
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 2.9e-100 369.8 439 48.5
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 2.1e-98 363.6 425 48.5
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 8.6e-97 358.2 428 47.7
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 1.4e-94 350.9 428 48.8
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 1.5e-93 347.4 440 45.0
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.6e-93 346.7 400 48.2
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 4.4e-93 345.9 445 45.4
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 4.9e-92 342.4 365 52.9
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 4.9e-92 342.4 430 48.1
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 4.2e-91 339.3 440 44.8
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 4.6e-90 335.9 445 46.7
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 1.7e-89 334.0 425 45.9
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 2.3e-89 333.6 429 45.9
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 6.6e-89 332.0 367 50.4
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.9e-88 330.5 426 47.2
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 3.3e-88 329.7 442 45.5
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 3.3e-88 329.7 426 46.7
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 4.3e-88 329.3 430 47.2
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 5.6e-88 328.9 429 45.5
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 5.6e-88 328.9 452 43.4
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 7.3e-88 328.6 437 46.0
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.3e-87 327.8 435 44.1
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 1.6e-87 327.4 440 43.0
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 2.8e-87 326.6 427 47.3
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 3.6e-87 326.2 444 42.6
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 4.8e-87 325.9 425 45.6
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 1.1e-86 324.7 429 45.0
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.8e-86 323.9 429 46.2
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 1.8e-86 323.9 442 42.5
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 2.4e-86 323.6 426 45.1
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 1.2e-85 321.2 429 46.2
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 1.5e-85 320.9 426 47.2
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 4.4e-85 319.3 427 46.4
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 5.8e-85 318.9 428 43.5
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 5.8e-85 318.9 442 42.1
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 9.9e-85 318.2 427 46.1
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 3.8e-84 316.2 351 51.3
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.4e-83 314.3 428 43.9
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 1.4e-83 314.3 425 45.4
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 2.4e-83 313.5 337 52.8
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 3.2e-83 313.2 322 54.7
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 5.4e-83 312.4 434 46.1
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 5.4e-83 312.4 443 43.1
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 5.4e-83 312.4 431 42.5
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 7.1e-83 312.0 425 45.6
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 7.1e-83 312.0 425 45.6
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 2.3e-81 307.0 441 42.9
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 1.5e-80 304.3 429 43.1
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 3.3e-80 303.1 405 46.2
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 1.3e-79 301.2 429 45.2
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 4.8e-79 299.3 343 49.3
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 9.0e-78 295.0 435 44.8
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.2e-77 294.7 486 40.1
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 3.8e-76 289.7 432 41.4
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.2e-74 284.6 424 42.5
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 2.7e-74 283.5 361 45.7
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 2.7e-74 283.5 436 39.7
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 1.0e-73 281.6 430 42.1
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.3e-73 281.2 447 41.4
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 1.9e-72 277.3 432 39.8
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 3.3e-72 276.6 430 41.6
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 7.4e-72 275.4 432 39.8
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 1.3e-71 274.6 444 42.1
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 4.8e-71 272.7 432 38.7
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 1.1e-70 271.6 430 39.3
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 1.4e-70 271.2 432 38.4
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 1.8e-70 270.8 435 39.8
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 1.2e-69 268.1 454 39.6
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 5.8e-69 265.8 434 38.2
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 1.4e-67 261.2 427 37.2
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 3.2e-67 260.0 433 38.3
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 9.3e-67 258.5 423 39.7
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 1.5e-64 251.1 259 53.3
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 4.3e-64 249.6 432 37.0
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 7.4e-64 248.8 272 50.0
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 2.1e-63 247.3 433 37.2
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 6.2e-63 245.7 437 40.3
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.8e-62 244.2 272 49.3
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 3.2e-59 233.4 353 41.9
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 3.5e-58 229.9 424 37.7
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.8e-57 227.6 435 34.9
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 6.7e-57 225.7 423 35.9
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 5.7e-56 222.6 421 34.9
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 4.8e-55 219.5 342 41.5
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 9.0e-54 215.3 411 36.7
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 1.5e-53 214.5 370 38.6
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 3.4e-53 213.4 416 36.3
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 4.5e-53 213.0 363 36.1
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 3.2e-51 206.8 424 35.6
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 4.2e-51 206.5 199 53.8
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 4.3e-48 196.4 395 34.7
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 7.4e-40 169.1 298 39.3
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 3.1e-38 163.7 425 30.4
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 2.6e-37 160.6 170 50.0
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 2.5e-35 154.1 432 30.3
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.8e-33 147.9 234 41.5
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 3.7e-31 140.2 176 44.9
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 1.7e-28 131.3 235 37.9
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.1e-27 128.6 152 44.1
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 2.5e-27 127.5 152 44.1
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 7.2e-27 125.9 152 43.4
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 7.2e-27 125.9 152 43.4
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 6.1e-26 122.9 143 44.8
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 1.2e-24 118.6 395 26.1
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.0e-20 105.5 128 49.2
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 1.3e-20 105.1 92 57.6
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 8.5e-20 102.4 270 32.6
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 1.4e-17 95.1 160 36.9
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.3e-15 88.6 65 69.2
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 2.7e-13 80.9 109 45.0
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 2.1e-10 71.2 130 36.9
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 2.3e-09 67.8 81 42.0
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 3.0e-09 67.4 55 56.4
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 3.0e-09 67.4 55 56.4
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 1.5e-08 65.1 62 48.4
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.6e-08 64.3 57 52.6
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 2.2e-07 61.2 83 41.0
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 4.9e-07 60.1 80 40.0
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 4.9e-07 60.1 80 40.0
AagrBONN_evm.TU.Sc2ySwM_117.315 Anthoceros agrestis HOM05D049954 ORTHO05D005065 3.2e-06 57.4 194 24.7


User provided reference genes

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