Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 4.8e-28 127.1 63 100.0
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 4.8e-28 127.1 63 100.0
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.6e-26 121.3 63 95.2
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 3.8e-25 117.5 63 90.5
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 7.1e-24 113.2 63 87.3
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 1.0e-22 109.4 63 84.1
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 3.7e-20 100.9 63 76.2
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 5.9e-18 93.6 63 71.4
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 2.2e-17 91.7 63 74.6
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 2.9e-17 91.3 62 67.7
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 5.0e-17 90.5 61 70.5
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 2.5e-16 88.2 62 66.1
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 4.2e-16 87.4 62 62.9
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 1.6e-15 85.5 62 64.5
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 1.6e-15 85.5 63 68.3
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 3.6e-15 84.3 59 67.8
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 3.6e-15 84.3 59 67.8
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 3.6e-15 84.3 59 67.8
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 1.0e-14 82.8 59 66.1
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 1.0e-14 82.8 59 66.1
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 2.3e-14 81.6 62 61.3
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 3.9e-14 80.9 63 61.9
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 5.1e-14 80.5 59 64.4
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 8.7e-14 79.7 63 61.9
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 1.9e-13 78.6 63 60.3
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 1.3e-12 75.9 60 60.0
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.6e-12 75.5 62 59.7
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 2.8e-12 74.7 59 61.0
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 3.7e-12 74.3 59 62.7
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 1.1e-11 72.8 63 60.3
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 1.1e-11 72.8 63 54.0
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 5.3e-11 70.5 62 50.0
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 2.6e-10 68.2 58 53.4
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 2.6e-10 68.2 60 51.7
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 1.7e-09 65.5 48 64.6
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 2.9e-09 64.7 58 48.3
Sabra06G0159800 Salix brachista HOM05D002789 ORTHO05D009074 2.9e-09 64.7 47 63.8
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.8e-09 64.3 57 47.4
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 5.0e-09 63.9 57 45.6
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 8.5e-09 63.2 53 54.7
Glyma.10G076300 Glycine max HOM05D007252 ORTHO05D009074 8.5e-09 63.2 58 48.3
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 8.5e-09 63.2 57 47.4
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 1.1e-08 62.8 53 54.7
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 1.1e-08 62.8 60 46.7
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 1.9e-08 62.0 53 54.7
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 1.9e-08 62.0 53 54.7
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 1.9e-08 62.0 53 52.8
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 2.5e-08 61.6 53 50.9
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 2.5e-08 61.6 58 51.7
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 3.2e-08 61.2 53 50.9
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 3.2e-08 61.2 53 50.9
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 4.2e-08 60.8 53 50.9
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 5.5e-08 60.5 53 47.2
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 5.5e-08 60.5 53 52.8
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 7.2e-08 60.1 53 47.2
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 7.2e-08 60.1 53 47.2
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 7.2e-08 60.1 53 50.9
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 1.6e-07 58.9 53 49.1
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 2.1e-07 58.5 53 45.3
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 2.1e-07 58.5 53 45.3
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 2.1e-07 58.5 53 45.3
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 2.1e-07 58.5 53 45.3
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 2.1e-07 58.5 53 45.3
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 2.1e-07 58.5 53 45.3
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 2.1e-07 58.5 53 45.3
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 2.1e-07 58.5 53 45.3
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 2.1e-07 58.5 53 49.1
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 2.7e-07 58.2 53 45.3
ClCG04G010260 Citrullus lanatus HOM05D007252 ORTHO05D009074 3.6e-07 57.8 54 53.7
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 3.6e-07 57.8 53 47.2
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 4.6e-07 57.4 61 49.2
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 4.6e-07 57.4 53 43.4
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 4.6e-07 57.4 53 43.4
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 4.6e-07 57.4 53 43.4
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 4.6e-07 57.4 53 43.4
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 6.1e-07 57.0 53 45.3
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 7.9e-07 56.6 53 43.4
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 7.9e-07 56.6 53 43.4
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 7.9e-07 56.6 53 43.4
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 1.0e-06 56.2 58 44.8
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 1.0e-06 56.2 55 47.3
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.4e-06 55.8 53 43.4
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 1.8e-06 55.5 52 51.9
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 1.8e-06 55.5 53 45.3
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 2.3e-06 55.1 57 43.9
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 3.0e-06 54.7 53 43.4
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 3.0e-06 54.7 53 43.4
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 3.0e-06 54.7 53 43.4
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 3.0e-06 54.7 52 44.2
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 3.9e-06 54.3 53 47.2
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 3.9e-06 54.3 53 47.2
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 3.9e-06 54.3 55 47.3
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 5.1e-06 53.9 53 45.3
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 5.1e-06 53.9 55 43.6
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 6.7e-06 53.5 53 43.4
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 8.8e-06 53.1 53 47.2
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 8.8e-06 53.1 53 45.3
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 8.8e-06 53.1 57 42.1


User provided reference genes

Program Settings