Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.007G289300 Gossypium raimondii HOM05D006263 ORTHO05D007549 3.8e-204 714.5 345 100.0
Gohir.D11G269500 Gossypium hirsutum HOM05D006263 ORTHO05D007549 2.7e-202 708.4 345 99.1
Gohir.A11G259300 Gossypium hirsutum HOM05D006263 ORTHO05D007549 1.8e-198 695.7 345 97.4
Duzib177G1028 Durio zibethinus HOM05D006263 ORTHO05D007549 2.3e-177 625.5 343 87.5
Thecc.05G294200 Theobroma cacao HOM05D006263 ORTHO05D007549 2.9e-175 618.6 344 84.6
COL.COLO4_13602 Corchorus olitorius HOM05D006263 ORTHO05D007549 8.3e-175 617.1 344 84.3
Atru.chr2.1379 Acer truncatum HOM05D006263 ORTHO05D007549 2.1e-149 532.7 348 72.7
Manes.09G141600 Manihot esculenta HOM05D006263 ORTHO05D007549 4.6e-149 531.6 342 71.1
Ciclev10020896m.g Citrus clementina HOM05D006263 ORTHO05D007549 7.9e-149 530.8 345 70.7
Sp6g26120 Schrenkiella parvula HOM05D006263 ORTHO05D007549 3.0e-148 528.9 336 70.8
BraA10t44195Z Brassica rapa HOM05D006263 ORTHO05D007549 5.1e-148 528.1 338 71.0
Haze_19416 Corylus avellana HOM05D006263 ORTHO05D007549 6.7e-148 527.7 342 71.3
C09p58780 Brassica napus HOM05D006263 ORTHO05D007549 1.1e-147 526.9 344 70.3
TWI34G1357 Tripterygium wilfordii HOM05D006263 ORTHO05D007549 1.1e-147 526.9 344 71.2
Haze_19445 Corylus avellana HOM05D006263 ORTHO05D007549 1.5e-147 526.6 342 71.3
Cfa016439 Carpinus fangiana HOM05D006263 ORTHO05D007549 3.3e-147 525.4 342 71.3
BcaC04g18720 Brassica carinata HOM05D006263 ORTHO05D007549 1.3e-146 523.5 344 70.3
A10p21320 Brassica napus HOM05D006263 ORTHO05D007549 2.8e-146 522.3 338 70.1
Potri.006G233200 Populus trichocarpa HOM05D006263 ORTHO05D007549 6.2e-146 521.2 341 71.0
BolC9t58720H Brassica oleracea HOM05D006263 ORTHO05D007549 1.1e-145 520.4 345 69.9
Potri.019G034400 Populus trichocarpa HOM05D006263 ORTHO05D007549 3.1e-145 518.8 338 71.6
BcaB08g36696 Brassica carinata HOM05D006263 ORTHO05D007549 5.3e-145 518.1 336 69.9
Thhalv10013996m.g Eutrema salsugineum HOM05D006263 ORTHO05D007549 6.9e-145 517.7 336 69.0
TAR623G0038 Trochodendron aralioides HOM05D006263 ORTHO05D007549 2.0e-144 516.2 343 70.3
AT5G18200 Arabidopsis thaliana HOM05D006263 ORTHO05D007549 2.6e-144 515.8 336 69.9
Carub.0006s1648 Capsella rubella HOM05D006263 ORTHO05D007549 9.9e-144 513.8 336 69.6
AL6G29400 Arabidopsis lyrata HOM05D006263 ORTHO05D007549 1.7e-143 513.1 336 70.2
THA.LOC104827270 Tarenaya hassleriana HOM05D006263 ORTHO05D007549 1.7e-143 513.1 337 69.7
Dinv14580 Davidia involucrata HOM05D006263 ORTHO05D007549 2.9e-143 512.3 341 68.9
Sabra19G0044500 Salix brachista HOM05D006263 ORTHO05D007549 2.4e-142 509.2 338 69.5
CARHR194860 Cardamine hirsuta HOM05D006263 ORTHO05D007549 5.5e-142 508.1 336 67.6
GSVIVG01033398001 Vitis vinifera HOM05D006263 ORTHO05D007549 2.7e-141 505.8 338 68.6
Prupe.7G003700 Prunus persica HOM05D006263 ORTHO05D007549 4.6e-141 505.0 337 69.7
CiPaw.10G000900 Carya illinoinensis HOM05D006263 ORTHO05D007549 2.3e-140 502.7 346 69.7
MELO3C006156.2 Cucumis melo HOM05D006263 ORTHO05D007549 2.3e-140 502.7 347 68.0
CANSAT78G2484 Cannabis sativa HOM05D006263 ORTHO05D007549 3.9e-140 501.9 341 69.2
Glyma.16G153300 Glycine max HOM05D006263 ORTHO05D007549 3.9e-140 501.9 336 69.3
Oeu060008.1 Olea europaea HOM05D006263 ORTHO05D007549 1.9e-139 499.6 346 67.3
Psat1g096040 Pisum sativum HOM05D006263 ORTHO05D007549 1.9e-139 499.6 343 67.3
Lj2A357T95 Lonicera japonica HOM05D006263 ORTHO05D007549 3.3e-139 498.8 344 69.5
Rhsim04G0087300 Rhododendron simsii HOM05D006263 ORTHO05D007549 3.3e-139 498.8 339 68.1
Nn7g35844 Nelumbo nucifera HOM05D006263 ORTHO05D007549 5.6e-139 498.0 338 69.8
ClCG05G001960 Citrullus lanatus HOM05D006263 ORTHO05D007549 9.6e-139 497.3 347 67.1
DCAR_013689 Daucus carota HOM05D006263 ORTHO05D007549 9.6e-139 497.3 340 68.2
VMungo0464G2181 Vigna mungo HOM05D006263 ORTHO05D007549 1.6e-138 496.5 344 68.0
Phvul.004G080400 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 3.7e-138 495.4 344 68.0
Aa31LG11G11400 Aethionema arabicum HOM05D006263 ORTHO05D007549 8.1e-138 494.2 369 62.9
Lj6g0008715 Lotus japonicus HOM05D006263 ORTHO05D007549 1.8e-137 493.0 335 68.4
Aqoxy1G00489 Aquilegia oxysepala HOM05D006263 ORTHO05D007549 4.0e-137 491.9 338 68.3
PSO384G1918 Papaver somniferum HOM05D006263 ORTHO05D007549 5.3e-137 491.5 339 68.4
PSO339G1401 Papaver somniferum HOM05D006263 ORTHO05D007549 2.0e-136 489.6 340 68.5
Sabra19G0042300 Salix brachista HOM05D006263 ORTHO05D007549 2.0e-136 489.6 384 61.5
RcHm_v2.0_Chr3g0497171 Rosa chinensis HOM05D006263 ORTHO05D007549 3.4e-136 488.8 340 69.4
CSS0025413 Camellia sinensis var. sinensis HOM05D006263 ORTHO05D007549 7.6e-136 487.6 342 68.1
PGR042G1093 Punica granatum HOM05D006263 ORTHO05D007549 1.7e-135 486.5 348 64.9
QL07p019666 Quercus lobata HOM05D006263 ORTHO05D007549 1.7e-135 486.5 344 67.7
Nitab4.5_0002825g0060 Nicotiana tabacum HOM05D006263 ORTHO05D007549 1.4e-134 483.4 340 65.3
MD12G1003100 Malus domestica HOM05D006263 ORTHO05D007549 2.5e-134 482.6 346 66.5
Nitab4.5_0000001g0100 Nicotiana tabacum HOM05D006263 ORTHO05D007549 3.2e-134 482.3 340 65.0
Ca_04490_v3 Cicer arietinum L. HOM05D006263 ORTHO05D007549 4.2e-134 481.9 339 67.3
TAR369G0989 Trochodendron aralioides HOM05D006263 ORTHO05D007549 7.1e-134 481.1 340 67.6
Solyc10g050850.2 Solanum lycopersicum HOM05D006263 ORTHO05D007549 1.6e-133 479.9 340 66.2
Lalb_Chr06g0173981 Lupinus albus HOM05D006263 ORTHO05D007549 2.1e-133 479.6 342 66.1
Medtr6g029470 Medicago truncatula HOM05D006263 ORTHO05D007549 2.1e-133 479.6 344 66.3
Hund06464 Selenicereus undatus HOM05D006263 ORTHO05D007549 4.6e-133 478.4 351 65.2
PGSC0003DMG400008259 Solanum tuberosum HOM05D006263 ORTHO05D007549 7.9e-133 477.6 340 66.5
Sopen10g022420 Solanum pennellii HOM05D006263 ORTHO05D007549 1.0e-132 477.2 340 65.6
CAN.G216.5 Capsicum annuum HOM05D006263 ORTHO05D007549 3.0e-132 475.7 340 65.0
Eucgr.L01413 Eucalyptus grandis HOM05D006263 ORTHO05D007549 3.3e-131 472.2 344 63.7
Eucgr.K02258 Eucalyptus grandis HOM05D006263 ORTHO05D007549 9.6e-131 470.7 344 63.4
MSTRG.20649 Avicennia marina HOM05D006263 ORTHO05D007549 2.1e-130 469.5 339 63.4
Migut.B01469 Erythranthe guttata HOM05D006263 ORTHO05D007549 2.1e-130 469.5 338 62.7
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 2.8e-130 469.2 340 64.1
Lsat_1_v5_gn_1_59641 Lactuca sativa HOM05D006263 ORTHO05D007549 8.2e-130 467.6 343 63.8
SGA_v2.0_scaffold145G36025 Striga asiatica HOM05D006263 ORTHO05D007549 8.2e-130 467.6 340 61.8
HanXRQChr01g0024721 Helianthus annuus HOM05D006263 ORTHO05D007549 1.1e-129 467.2 347 62.2
AUR62012878 Chenopodium quinoa HOM05D006263 ORTHO05D007549 3.1e-129 465.7 348 65.8
Cc06_g22910 Coffea canephora HOM05D006263 ORTHO05D007549 5.3e-129 464.9 342 64.0
FAN23G2537 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.5e-128 463.4 336 67.0
FvH4_1g28080 Fragaria vesca HOM05D006263 ORTHO05D007549 3.4e-128 462.2 336 66.7
FAN19G0970 Fragaria x ananassa HOM05D006263 ORTHO05D007549 7.6e-128 461.1 336 66.4
AUR62027102 Chenopodium quinoa HOM05D006263 ORTHO05D007549 1.0e-127 460.7 349 64.8
FAN28G0550 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.2e-127 459.5 336 66.4
FAN26G0246 Fragaria x ananassa HOM05D006263 ORTHO05D007549 4.2e-126 455.3 336 66.1
CDE02G1162 Ceratophyllum demersum HOM05D006263 ORTHO05D007549 7.2e-126 454.5 339 61.7
FAN28G1368 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.7e-125 452.6 336 65.2
Cpa.g.sc51.112 Carica papaya HOM05D006263 ORTHO05D007549 3.6e-125 452.2 343 63.3
ECA285G0004 Erigeron canadensis HOM05D006263 ORTHO05D007549 1.8e-124 449.9 342 62.0
Peaxi162Scf00076g01055 Petunia axillaris HOM05D006263 ORTHO05D007549 1.8e-124 449.9 340 62.4
HPP92_015639 Vanilla planifolia HOM05D006263 ORTHO05D007549 1.5e-123 446.8 345 59.4
ATR0697G038 Amborella trichopoda HOM05D006263 ORTHO05D007549 7.4e-123 444.5 378 59.5
Ca_04491_v3 Cicer arietinum L. HOM05D006263 ORTHO05D000429 4.8e-122 441.8 337 62.3
Zm00001eb301000 Zea mays HOM05D006263 ORTHO05D007549 2.4e-121 439.5 357 58.5
unitig_26.g9717 Utricularia gibba HOM05D006263 ORTHO05D007549 4.2e-118 428.7 338 58.0
vmacro09144 Vaccinium macrocarpon HOM05D006263 ORTHO05D007549 3.9e-116 422.2 340 58.5
SalBow5G0264 Salvia bowleyana HOM05D006263 ORTHO05D007549 9.7e-115 417.5 339 58.7
EL10Ac9g22064 Beta vulgaris HOM05D006263 ORTHO05D007549 1.3e-114 417.2 341 60.1
TPR.G34629 Trifolium pratense HOM05D006263 ORTHO05D007549 2.8e-114 416.0 338 57.1
Psat1g096000 Pisum sativum HOM05D006263 ORTHO05D007549 2.4e-113 412.9 338 58.0
Actinidia17306 Actinidia chinensis HOM05D000412 ORTHO05D000429 7.7e-112 407.9 287 68.3
Medtr6g029530 Medicago truncatula HOM05D006263 ORTHO05D007549 5.0e-111 405.2 338 57.7
Sc18g0007080 Simmondsia chinensis HOM05D006263 ORTHO05D007549 6.5e-111 404.8 347 57.1
Ah.01g007390 Amaranthus hybridus HOM05D006263 ORTHO05D007549 1.4e-110 403.7 434 48.2
MBI11_g31289_MAGBIO Magnolia biondii HOM05D006263 ORTHO05D007549 1.4e-110 403.7 346 57.2
Oeu003888.1 Olea europaea HOM05D006263 ORTHO05D007549 2.2e-106 389.8 266 66.9
SEGI_37923 Sequoiadendron giganteum HOM05D006263 ORTHO05D007549 3.3e-99 365.9 347 50.4
CsaV3_3G009370 Cucumis sativus L. HOM05D006263 ORTHO05D007549 3.5e-96 355.9 260 65.4
Eucgr.A02096 Eucalyptus grandis HOM05D006263 ORTHO05D007549 1.7e-95 353.6 287 61.0
Sed0020840 Sechium edule HOM05D006263 ORTHO05D007549 1.0e-92 344.4 262 64.5
Os07g0171200 Oryza sativa ssp. japonica HOM05D006263 ORTHO05D007549 5.2e-92 342.0 232 66.8
Hma1.2p1_0376F.1_g139140 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 4.1e-81 305.8 186 74.2
Hma1.2p1_0376F.1_g139150 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 7.0e-81 305.1 183 74.9
Mapoly0103s0062 Marchantia polymorpha HOM05D006263 ORTHO05D007549 2.3e-76 290.0 342 44.2
Pp3c17_20460 Physcomitrium patens HOM05D006263 ORTHO05D007549 1.0e-71 274.6 349 40.4
FAN16G0439 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.4e-65 254.2 207 62.3
SMO367G0539 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 1.0e-63 248.1 343 38.5
FAN18G1683 Fragaria x ananassa HOM05D000349 ORTHO05D007549 2.4e-52 210.3 201 55.7
RhsimUnG0048700 Rhododendron simsii HOM05D006263 ORTHO05D007549 3.2e-49 199.9 179 57.0
Hma1.2p1_0376F.1_g139120 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 9.2e-49 198.4 166 60.2
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 7.8e-48 195.3 187 55.6
Pp3c2_1350 Physcomitrium patens HOM05D006263 ORTHO05D007549 6.9e-44 182.2 259 37.8
FAN18G1526 Fragaria x ananassa HOM05D000349 ORTHO05D007549 2.6e-43 180.3 185 53.5
FAN24G0044 Fragaria x ananassa HOM05D006263 ORTHO05D007549 3.2e-41 173.3 211 46.4
TPR.G18346 Trifolium pratense HOM05D006263 ORTHO05D007549 3.4e-27 126.7 81 67.9
SMO275G0019 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 1.9e-22 110.9 153 35.3
SMO367G0580 Selaginella moellendorffii HOM05D006263 ORTHO05D378923 4.9e-18 96.3 127 37.0
FAN03G3217 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.1e-17 95.1 60 70.0
FAN11G1140 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.1e-17 95.1 60 70.0
FAN22G0360 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.1e-17 95.1 60 70.0
FAN22G1437 Fragaria x ananassa HOM05D002676 ORTHO05D007549 9.3e-17 92.0 60 68.3
FAN15G0659 Fragaria x ananassa HOM05D006263 ORTHO05D007549 5.1e-15 86.3 123 42.3
FAN25G1138 Fragaria x ananassa HOM05D012843 ORTHO05D017973 9.7e-14 82.0 77 55.8
FAN22G0951 Fragaria x ananassa HOM05D000005 ORTHO05D000294 1.3e-13 81.6 77 55.8
FAN08G1181 Fragaria x ananassa HOM05D003914 ORTHO05D001189 2.8e-13 80.5 76 52.6
FAN27G3525 Fragaria x ananassa HOM05D003914 ORTHO05D001189 2.8e-13 80.5 76 52.6
FAN12G3135 Fragaria x ananassa HOM05D000005 ORTHO05D000294 3.7e-13 80.1 77 54.5
Phvul.004G082000 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 9.0e-12 75.5 60 56.7
FAN22G2156 Fragaria x ananassa HOM05D002676 ORTHO05D003194 2.9e-10 70.5 71 49.3
FAN09G2057 Fragaria x ananassa HOM05D000005 ORTHO05D000294 6.5e-10 69.3 61 55.7
SHI23126 Sapria himalayana HOM05D006263 ORTHO05D007549 8.8e-07 58.9 102 36.3
FAN19G1473 Fragaria x ananassa HOM05D000005 ORTHO05D000294 1.1e-06 58.5 70 47.1


User provided reference genes

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