Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 5.2e-180 634.4 355 100.0
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 8.6e-175 617.1 355 97.7
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.2e-170 602.4 357 94.7
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 7.4e-102 374.8 385 61.0
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 1.7e-101 373.6 384 64.3
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 1.7e-98 363.6 390 62.6
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 3.1e-92 342.8 384 61.7
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.2e-81 305.1 372 55.9
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 7.5e-78 295.0 372 54.6
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.7e-77 293.9 371 56.1
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.0e-74 282.3 343 56.6
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 8.8e-71 271.6 342 55.6
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.5e-70 268.5 342 55.0
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 1.2e-62 244.6 380 49.2
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 2.1e-56 223.8 361 47.1
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 3.6e-56 223.0 354 45.2
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.2e-54 218.0 388 42.3
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.7e-53 214.2 353 44.5
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 2.9e-53 213.4 348 47.1
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 2.4e-52 210.3 347 48.4
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.0e-51 207.2 319 48.0
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 6.0e-51 205.7 346 45.4
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.8e-51 205.3 323 48.0
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 1.7e-50 204.1 349 48.7
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.7e-50 204.1 334 43.1
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 5.0e-50 202.6 358 44.7
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.6e-49 199.1 319 46.4
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 5.8e-46 189.1 366 41.8
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 2.2e-45 187.2 335 41.5
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 9.2e-44 181.8 317 42.3
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 9.2e-44 181.8 317 42.3
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 4.6e-43 179.5 348 41.7
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 5.2e-39 166.0 350 41.7
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 2.0e-38 164.1 344 39.0
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 2.4e-36 157.1 350 40.6
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 1.6e-35 154.5 362 35.6
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 2.7e-35 153.7 337 42.1
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 3.5e-35 153.3 345 38.3
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 3.5e-35 153.3 338 42.0
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 3.5e-35 153.3 349 40.4
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 6.0e-35 152.5 360 40.6
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 6.0e-35 152.5 344 40.1
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 7.8e-35 152.1 336 40.2
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 2.3e-34 150.6 346 38.7
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.0e-34 150.2 375 37.9
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 8.6e-34 148.7 375 37.9
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 1.1e-33 148.3 393 38.2
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 1.5e-33 147.9 366 39.1
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.9e-33 147.5 345 36.2
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 3.3e-33 146.7 351 37.6
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 4.3e-33 146.4 375 37.6
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 7.3e-33 145.6 350 40.0
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 2.1e-32 144.1 348 37.6
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 2.8e-32 143.7 357 37.0
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 3.6e-32 143.3 332 38.9
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 4.7e-32 142.9 355 39.4
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 6.2e-32 142.5 352 35.8
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 1.1e-31 141.7 373 40.2
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 1.4e-31 141.4 395 34.7
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.8e-31 141.0 342 38.0
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 2.4e-31 140.6 305 44.3
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.1e-31 140.2 372 36.0
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 1.5e-30 137.9 299 42.1
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 2.6e-30 137.1 373 36.7
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 3.4e-30 136.7 341 37.0
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 3.4e-30 136.7 343 36.2
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 4.4e-30 136.3 378 34.4
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 7.6e-30 135.6 330 40.0
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 1.3e-29 134.8 339 37.2
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 2.9e-29 133.7 362 37.8
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 1.9e-28 131.0 289 40.5
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.9e-28 131.0 329 36.2
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 4.2e-28 129.8 340 37.1
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 5.4e-28 129.4 382 34.0
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 5.4e-28 129.4 342 33.6
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 3.5e-27 126.7 348 33.0
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 3.5e-27 126.7 339 36.9
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 1.0e-26 125.2 338 36.1
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 1.3e-26 124.8 366 39.6
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 1.5e-25 121.3 342 37.7
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 2.5e-25 120.6 324 36.4
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 5.6e-25 119.4 369 34.4
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 7.3e-25 119.0 338 35.8
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 7.3e-25 119.0 336 36.9
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 7.3e-25 119.0 336 36.9
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 1.6e-24 117.9 397 33.8
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 1.6e-24 117.9 337 32.9
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 2.1e-24 117.5 335 36.7
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 2.1e-24 117.5 335 38.8
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 2.8e-24 117.1 198 44.9
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 2.8e-24 117.1 330 39.4
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 2.8e-24 117.1 342 33.9
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 6.2e-24 115.9 351 33.9
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 1.4e-23 114.8 332 37.7
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 1.8e-23 114.4 348 35.1
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 1.2e-22 111.7 354 32.8
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 3.4e-22 110.2 349 33.5
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 2.9e-21 107.1 344 32.6
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 4.9e-21 106.3 336 36.0
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 8.4e-21 105.5 347 34.9
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 9.3e-20 102.1 345 33.0
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 2.1e-19 100.9 318 30.8
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 3.5e-19 100.1 201 39.8
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 6.0e-19 99.4 212 37.3
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 7.9e-19 99.0 201 39.8
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 1.3e-18 98.2 286 35.0
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 5.1e-18 96.3 196 40.3
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 5.1e-18 96.3 149 43.0
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 6.6e-18 95.9 370 31.6
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 1.1e-17 95.1 200 40.0
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 3.3e-17 93.6 216 37.0
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 3.3e-17 93.6 331 34.7
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 5.6e-17 92.8 327 35.8
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 7.3e-17 92.4 332 31.3
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 1.6e-16 91.3 335 32.2
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 1.6e-16 91.3 331 30.2
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 3.6e-16 90.1 331 32.3
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 3.6e-16 90.1 256 34.8
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 4.8e-16 89.7 345 32.5
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 8.1e-16 89.0 197 39.6
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 2.4e-15 87.4 343 30.6
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 3.1e-15 87.0 325 30.2
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 4.0e-15 86.7 328 34.5
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 6.9e-15 85.9 196 37.8
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 6.9e-15 85.9 196 37.8
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 9.9e-14 82.0 324 33.0
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.7e-13 81.3 163 39.9
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 6.4e-13 79.3 292 31.2
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 3.2e-12 77.0 328 30.2
Ah.02g125610 Amaranthus hybridus HOM05D005407 ORTHO05D006544 9.3e-12 75.5 185 37.3
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 2.3e-10 70.9 347 31.4
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 3.9e-10 70.1 198 35.9
MELO3C020864.2 Cucumis melo HOM05D005407 ORTHO05D006544 2.5e-09 67.4 331 30.2
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.6e-08 64.7 106 42.5
SEGI_05722 Sequoiadendron giganteum HOM05D019616 ORTHO05D023140 6.2e-08 62.8 236 31.8
unitig_899.g14576 Utricularia gibba HOM05D005407 ORTHO05D006544 1.8e-07 61.2 212 33.5
CDE02G0512 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 2.4e-07 60.8 365 25.5
ClCG02G012410 Citrullus lanatus HOM05D005407 ORTHO05D006544 2.4e-07 60.8 352 27.0
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 6.9e-07 59.3 349 29.2
Manes.14G153300 Manihot esculenta HOM05D003020 ORTHO05D003226 9.0e-07 58.9 215 30.7
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 1.5e-06 58.2 188 30.9
SEGI_38417 Sequoiadendron giganteum HOM05D019616 ORTHO05D023140 3.4e-06 57.0 213 30.5


User provided reference genes

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