Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.007G210900 Gossypium raimondii HOM05D003435 ORTHO05D004032 1.2e-106 389.8 187 100.0
Gohir.D11G197000 Gossypium hirsutum HOM05D003435 ORTHO05D004032 1.7e-105 386.0 187 98.9
Gohir.A11G190301 Gossypium hirsutum HOM05D003435 ORTHO05D004032 1.1e-101 373.2 187 96.3
Thecc.01G052400 Theobroma cacao HOM05D003435 ORTHO05D004032 1.0e-86 323.6 171 92.4
Duzib147G1293 Durio zibethinus HOM05D003435 ORTHO05D004032 1.3e-86 323.2 171 91.2
Gorai.008G074500 Gossypium raimondii HOM05D003435 ORTHO05D004032 4.3e-85 318.2 171 89.5
Gohir.A12G070200 Gossypium hirsutum HOM05D003435 ORTHO05D004032 7.4e-85 317.4 171 88.9
Gohir.D12G088600 Gossypium hirsutum HOM05D003435 ORTHO05D004032 9.7e-85 317.0 171 88.9
COL.COLO4_11380 Corchorus olitorius HOM05D003435 ORTHO05D004032 2.8e-84 315.5 171 88.9
CDE05G0336 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 3.4e-82 308.5 171 86.5
Manes.13G126200 Manihot esculenta HOM05D003435 ORTHO05D004032 3.8e-81 305.1 171 85.4
TWI53G0909 Tripterygium wilfordii HOM05D003435 ORTHO05D004032 6.5e-81 304.3 171 83.0
QL06p042317 Quercus lobata HOM05D003435 ORTHO05D004032 4.2e-80 301.6 171 85.4
Nn1g05856 Nelumbo nucifera HOM05D003435 ORTHO05D004032 7.2e-80 300.8 171 83.6
PSO541G5504 Papaver somniferum HOM05D003435 ORTHO05D004032 7.2e-80 300.8 171 85.4
Glyma.05G090500 Glycine max HOM05D003435 ORTHO05D004032 9.4e-80 300.4 171 83.6
Phvul.003G245800 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 9.4e-80 300.4 171 83.0
CANSAT01G2969 Cannabis sativa HOM05D003435 ORTHO05D004032 1.6e-79 299.7 171 83.6
Lj4g0022564 Lotus japonicus HOM05D003435 ORTHO05D004032 1.6e-79 299.7 171 81.9
PSO675G6314 Papaver somniferum HOM05D003435 ORTHO05D004032 1.6e-79 299.7 171 85.4
AUR62031680 Chenopodium quinoa HOM05D003435 ORTHO05D004032 2.1e-79 299.3 171 84.2
EL10Ac2g02707 Beta vulgaris HOM05D003435 ORTHO05D004032 2.7e-79 298.9 171 83.6
Psat2g165400 Pisum sativum HOM05D003435 ORTHO05D004032 2.7e-79 298.9 171 84.2
Cfa003996 Carpinus fangiana HOM05D003435 ORTHO05D004032 7.9e-79 297.4 171 83.0
CiPaw.01G021600 Carya illinoinensis HOM05D003435 ORTHO05D004032 1.4e-78 296.6 171 84.8
Glyma.17G176300 Glycine max HOM05D003435 ORTHO05D004032 1.4e-78 296.6 171 82.5
Peaxi162Scf00916g00135 Petunia axillaris HOM05D003435 ORTHO05D004032 1.4e-78 296.6 171 82.5
TAR376G0307 Trochodendron aralioides HOM05D003435 ORTHO05D004032 1.4e-78 296.6 171 81.9
Ca_22188_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 1.8e-78 296.2 171 81.3
CDE05G2519 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 2.3e-78 295.8 171 83.6
Nn5g30194 Nelumbo nucifera HOM05D003435 ORTHO05D004032 2.3e-78 295.8 171 83.0
Lj2g0013536 Lotus japonicus HOM05D003435 ORTHO05D004032 3.0e-78 295.4 171 83.0
TAR381G0144 Trochodendron aralioides HOM05D003435 ORTHO05D004032 3.0e-78 295.4 171 82.5
AUR62032563 Chenopodium quinoa HOM05D003435 ORTHO05D004032 3.9e-78 295.0 171 83.0
PGR119G1381 Punica granatum HOM05D003435 ORTHO05D004032 3.9e-78 295.0 171 82.5
Lalb_Chr16g0388371 Lupinus albus HOM05D003435 ORTHO05D004032 5.1e-78 294.7 171 81.3
Haze_15428 Corylus avellana HOM05D003435 ORTHO05D004032 6.7e-78 294.3 171 81.9
Dinv39875 Davidia involucrata HOM05D003435 ORTHO05D004032 8.8e-78 293.9 171 81.9
Lalb_Chr09g0323031 Lupinus albus HOM05D003435 ORTHO05D004032 8.8e-78 293.9 171 82.5
MD02G1168900 Malus domestica HOM05D003435 ORTHO05D004032 1.1e-77 293.5 171 83.0
Aqoxy6G01408_Aqoxy6G01409 Aquilegia oxysepala HOM05D003435 ORTHO05D004032 2.5e-77 292.4 171 82.5
arahy.Tifrunner.gnm1.ann1.IHL9QQ Arachis hypogaea HOM05D003435 ORTHO05D004032 2.5e-77 292.4 171 80.7
arahy.Tifrunner.gnm1.ann1.ZBDE9H Arachis hypogaea HOM05D003435 ORTHO05D004032 2.5e-77 292.4 171 80.7
Psat4g087800 Pisum sativum HOM05D003435 ORTHO05D004032 2.5e-77 292.4 171 81.3
Prupe.7G136400 Prunus persica HOM05D003435 ORTHO05D004032 2.5e-77 292.4 171 83.0
Eucgr.F01659 Eucalyptus grandis HOM05D003435 ORTHO05D004032 3.3e-77 292.0 171 81.3
Eucgr.F02662 Eucalyptus grandis HOM05D003435 ORTHO05D004032 3.3e-77 292.0 171 80.7
Sp5g11620 Schrenkiella parvula HOM05D003435 ORTHO05D004032 3.3e-77 292.0 171 78.9
Medtr8g079820 Medicago truncatula HOM05D003435 ORTHO05D004032 4.3e-77 291.6 171 80.7
Solyc02g090570.4 Solanum lycopersicum HOM05D003435 ORTHO05D004032 4.3e-77 291.6 171 81.3
Sopen02g035220 Solanum pennellii HOM05D003435 ORTHO05D004032 4.3e-77 291.6 171 81.3
Aa31LG4G18760 Aethionema arabicum HOM05D003435 ORTHO05D004032 5.7e-77 291.2 171 78.4
Hund13567 Selenicereus undatus HOM05D003435 ORTHO05D004032 9.7e-77 290.4 171 80.7
THA.LOC104819223 Tarenaya hassleriana HOM05D003435 ORTHO05D004032 1.3e-76 290.0 171 78.4
TPR.G19029 Trifolium pratense HOM05D003435 ORTHO05D004032 1.3e-76 290.0 171 80.1
BcaB01g00607 Brassica carinata HOM05D003435 ORTHO05D004032 1.7e-76 289.7 171 77.8
Carub.0005s1691 Capsella rubella HOM05D003435 ORTHO05D004032 1.7e-76 289.7 171 77.8
Thhalv10010058m.g Eutrema salsugineum HOM05D003435 ORTHO05D004032 1.7e-76 289.7 171 77.8
Glyma.01G184500 Glycine max HOM05D003435 ORTHO05D004032 1.7e-76 289.7 171 82.5
MD15G1280900 Malus domestica HOM05D003435 ORTHO05D004032 1.7e-76 289.7 171 81.9
C08p25650 Brassica napus HOM05D003435 ORTHO05D004032 2.2e-76 289.3 171 78.4
CsaV3_2G016800 Cucumis sativus L. HOM05D003435 ORTHO05D004032 2.2e-76 289.3 171 81.3
BcaC07g39520 Brassica carinata HOM05D003435 ORTHO05D004032 2.8e-76 288.9 171 77.8
BolC8t50184H Brassica oleracea HOM05D003435 ORTHO05D004032 2.8e-76 288.9 171 77.8
CARHR160100 Cardamine hirsuta HOM05D003435 ORTHO05D004032 2.8e-76 288.9 171 77.2
A09p43620 Brassica napus HOM05D003435 ORTHO05D004032 3.7e-76 288.5 171 77.2
BraA09t39823Z Brassica rapa HOM05D003435 ORTHO05D004032 3.7e-76 288.5 171 77.2
AL5G30740 Arabidopsis lyrata HOM05D003435 ORTHO05D004032 4.8e-76 288.1 171 77.2
AT3G50590 Arabidopsis thaliana HOM05D003435 ORTHO05D004032 4.8e-76 288.1 171 77.2
Rhsim08G0102200 Rhododendron simsii HOM05D003435 ORTHO05D004032 6.3e-76 287.7 171 80.1
Sc03g0001420 Simmondsia chinensis HOM05D003435 ORTHO05D004032 8.2e-76 287.3 171 81.3
CSS0011380 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 1.1e-75 287.0 171 81.3
CSS0024619 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 1.1e-75 287.0 171 81.3
Ca_24784_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 1.1e-75 287.0 171 80.7
Sed0012547 Sechium edule HOM05D003435 ORTHO05D004032 1.1e-75 287.0 171 80.7
Manes.12G101600 Manihot esculenta HOM05D003435 ORTHO05D004032 1.4e-75 286.6 171 80.1
Ciclev10024690m.g Citrus clementina HOM05D003435 ORTHO05D004032 1.8e-75 286.2 171 79.5
Medtr5g017810 Medicago truncatula HOM05D003435 ORTHO05D004032 6.9e-75 284.3 171 77.2
Atru.chr3.398 Acer truncatum HOM05D003435 ORTHO05D004032 1.5e-74 283.1 171 77.2
RcHm_v2.0_Chr2g0105001 Rosa chinensis HOM05D003435 ORTHO05D004032 1.5e-74 283.1 171 80.7
Oeu049304.1 Olea europaea HOM05D003435 ORTHO05D004032 2.0e-74 282.7 171 78.9
Phvul.002G020500 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 2.0e-74 282.7 171 80.1
SHI23020 Sapria himalayana HOM05D003435 ORTHO05D004032 4.5e-74 281.6 171 77.2
HPP92_006174 Vanilla planifolia HOM05D003435 ORTHO05D004032 5.9e-74 281.2 171 77.8
Actinidia16507 Actinidia chinensis HOM05D003435 ORTHO05D004032 7.7e-74 280.8 171 78.4
ATR0021G056 Amborella trichopoda HOM05D003435 ORTHO05D004032 7.7e-74 280.8 171 78.4
MSTRG.23766 Avicennia marina HOM05D003435 ORTHO05D004032 7.7e-74 280.8 171 77.2
Cc07_g05840 Coffea canephora HOM05D003435 ORTHO05D004032 1.0e-73 280.4 171 79.5
FAN26G2684 Fragaria x ananassa HOM05D003435 ORTHO05D004032 1.0e-73 280.4 171 79.5
FAN28G0748 Fragaria x ananassa HOM05D003435 ORTHO05D004032 2.2e-73 279.3 171 79.5
DCAR_011292 Daucus carota HOM05D003435 ORTHO05D004032 2.9e-73 278.9 171 79.5
FvH4_1g15690 Fragaria vesca HOM05D003435 ORTHO05D004032 2.9e-73 278.9 171 78.9
FAN19G0078 Fragaria x ananassa HOM05D003435 ORTHO05D004032 2.9e-73 278.9 171 78.9
FAN23G2700 Fragaria x ananassa HOM05D003435 ORTHO05D004032 2.9e-73 278.9 171 78.9
Lsat_1_v5_gn_4_167420 Lactuca sativa HOM05D003435 ORTHO05D004032 2.9e-73 278.9 171 78.9
HanXRQChr14g0430631 Helianthus annuus HOM05D003435 ORTHO05D004032 3.8e-73 278.5 171 78.9
VMungo1215G0393 Vigna mungo HOM05D003435 ORTHO05D004032 3.8e-73 278.5 171 78.9
ECA232G3039 Erigeron canadensis HOM05D003435 ORTHO05D004032 6.5e-73 277.7 171 78.4
SGA_v2.0_scaffold15G07262 Striga asiatica HOM05D003435 ORTHO05D004032 6.5e-73 277.7 191 72.3
Cpa.g.sc6.380 Carica papaya HOM05D003435 ORTHO05D004032 8.5e-73 277.3 204 67.2
Lj4C140G3 Lonicera japonica HOM05D003435 ORTHO05D004032 2.5e-72 275.8 191 73.3
Potri.007G041000 Populus trichocarpa HOM05D003435 ORTHO05D004032 5.5e-72 274.6 171 77.2
Sabra07G0036700 Salix brachista HOM05D003435 ORTHO05D004032 9.4e-72 273.9 171 76.6
Os09g0407950 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 1.5e-69 266.5 174 74.1
SalBow5G2384 Salvia bowleyana HOM05D003435 ORTHO05D004032 1.5e-69 266.5 197 67.0
Aa31LG1G15390 Aethionema arabicum HOM05D003435 ORTHO05D004032 4.4e-69 265.0 186 66.7
ClCG02G012690 Citrullus lanatus HOM05D003435 ORTHO05D004032 5.7e-69 264.6 213 64.8
Zm00001eb051800 Zea mays HOM05D003435 ORTHO05D004032 7.4e-69 264.2 174 73.6
GSVIVG01006575001 Vitis vinifera HOM05D003435 ORTHO05D004032 9.7e-69 263.8 183 73.2
SEGI_22339 Sequoiadendron giganteum HOM05D003435 ORTHO05D004032 5.0e-65 251.5 174 71.8
Ah.10g029820 Amaranthus hybridus HOM05D003435 ORTHO05D004032 3.7e-60 235.3 143 80.4
VMungo0251G2917 Vigna mungo HOM05D003435 ORTHO05D004032 2.4e-59 232.6 128 85.2
HPP92_006187 Vanilla planifolia HOM05D003435 ORTHO05D004032 7.7e-58 227.6 198 59.6
unitig_27.g25322 Utricularia gibba HOM05D003435 ORTHO05D004032 7.2e-56 221.1 143 73.4
Mapoly0038s0024 Marchantia polymorpha HOM05D003435 ORTHO05D004032 3.6e-55 218.8 173 65.3
Pp3c3_22080 Physcomitrium patens HOM05D003435 ORTHO05D004032 1.3e-52 210.3 173 61.8
TPR.G31102 Trifolium pratense HOM05D003435 ORTHO05D004032 2.8e-52 209.1 238 51.3
HPP92_008982 Vanilla planifolia HOM05D003435 ORTHO05D004032 1.8e-51 206.5 172 61.6
AagrBONN_evm.TU.Sc2ySwM_117.2914 Anthoceros agrestis HOM05D003435 ORTHO05D004032 7.7e-50 201.1 171 59.1
SMO304G0064 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 3.8e-49 198.7 171 57.9
Pp3c11_22390 Physcomitrium patens HOM05D000091 ORTHO05D004032 3.6e-47 192.2 174 56.3
Pp3c7_4380 Physcomitrium patens HOM05D000091 ORTHO05D004032 1.0e-46 190.7 174 55.2
CBR_g239 Chara braunii HOM05D003435 ORTHO05D004032 1.9e-40 169.9 173 50.9
CBR_g11121 Chara braunii HOM05D003435 ORTHO05D004032 9.8e-37 157.5 179 48.0
Psat0s2790g0120 Pisum sativum HOM05D003679 ORTHO05D004265 2.8e-31 139.4 101 69.3
Duzib187G1677 Durio zibethinus HOM05D003435 ORTHO05D004032 9.5e-24 114.4 69 81.2
Peaxi162Scf00691g00516 Petunia axillaris HOM05D003435 ORTHO05D004032 2.2e-20 103.2 59 76.3
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 6.4e-20 101.7 60 78.3
SMO304G0043 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 2.1e-18 96.7 171 38.6
Psat0s3352g0160 Pisum sativum HOM05D000529 ORTHO05D020973 1.1e-16 90.9 60 70.0
Migut.H00454 Erythranthe guttata HOM05D003435 ORTHO05D004032 6.4e-12 75.1 38 89.5
Hma1.2p1_1744F.1_g300230 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 2.4e-11 73.2 34 94.1
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 1.6e-10 70.5 38 86.8
Glyma.11G057700 Glycine max HOM05D003435 ORTHO05D004032 1.3e-09 67.4 46 69.6
SMO014G0036 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 3.9e-09 65.9 78 42.3
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 1.9e-08 63.5 33 84.8
Rhsim03G0142900 Rhododendron simsii HOM05D000230 ORTHO05D000176 8.1e-07 58.2 36 77.8


User provided reference genes

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