Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 4.6e-49 197.6 100 100.0
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 4.6e-49 197.6 100 100.0
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 7.3e-47 190.3 100 96.0
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 1.3e-32 142.9 98 73.5
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 1.2e-28 129.8 95 68.4
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 8.7e-24 113.6 100 59.0
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 4.3e-23 111.3 89 61.8
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 7.3e-23 110.5 100 58.0
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 2.8e-22 108.6 100 58.0
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 2.8e-22 108.6 100 56.0
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 6.2e-22 107.5 100 57.0
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 8.1e-22 107.1 101 56.4
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 1.8e-21 105.9 102 52.0
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 5.3e-21 104.4 100 55.0
TAR626G0598 Trochodendron aralioides HOM05D008139 ORTHO05D009872 1.2e-20 103.2 98 56.1
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 1.5e-20 102.8 101 54.5
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 3.4e-20 101.7 99 54.5
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 1.7e-19 99.4 102 51.0
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 3.8e-19 98.2 96 54.2
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 3.8e-19 98.2 89 51.7
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 8.4e-19 97.1 97 51.5
Nn1g07030 Nelumbo nucifera HOM05D008139 ORTHO05D009872 1.9e-18 95.9 98 52.0
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 2.4e-18 95.5 106 50.9
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 2.4e-18 95.5 85 54.1
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 3.2e-18 95.1 95 51.6
TWI75G0563 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 9.3e-18 93.6 95 53.7
ClCG02G001810 Citrullus lanatus HOM05D008139 ORTHO05D009872 1.2e-17 93.2 82 58.5
CsaV3_7G003730 Cucumis sativus L. HOM05D008139 ORTHO05D009872 1.6e-17 92.8 85 57.6
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 2.1e-17 92.4 106 50.9
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 2.1e-17 92.4 83 57.8
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 4.6e-17 91.3 95 51.6
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 4.6e-17 91.3 97 52.6
MELO3C018806.2 Cucumis melo HOM05D008139 ORTHO05D009872 7.9e-17 90.5 85 57.6
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 2.3e-16 89.0 83 54.2
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 5.1e-16 87.8 78 59.0
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 5.1e-16 87.8 78 59.0
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 6.7e-16 87.4 95 48.4
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 8.7e-16 87.0 99 47.5
Aqoxy4G01991 Aquilegia oxysepala HOM05D008139 ORTHO05D009872 8.7e-16 87.0 98 44.9
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 1.1e-15 86.7 90 48.9
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 1.5e-15 86.3 82 54.9
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 1.9e-15 85.9 98 50.0
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 1.9e-15 85.9 87 50.6
DCAR_019772 Daucus carota HOM05D008139 ORTHO05D009872 2.5e-15 85.5 85 51.8
SGA_v2.0_scaffold374G50235 Striga asiatica HOM05D008139 ORTHO05D009872 3.3e-15 85.1 96 45.8
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 9.6e-15 83.6 84 51.2
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 2.8e-14 82.0 81 53.1
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 3.7e-14 81.6 96 46.9
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 4.8e-14 81.3 80 50.0
CAN.G1126.30 Capsicum annuum HOM05D008139 ORTHO05D009872 8.1e-14 80.5 83 47.0
Peaxi162Scf00057g00045 Petunia axillaris HOM05D008139 ORTHO05D009872 1.1e-13 80.1 86 50.0
Dinv02745 Davidia involucrata HOM05D008139 ORTHO05D009872 2.4e-13 79.0 78 52.6
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 2.4e-13 79.0 82 47.6
Lsat_1_v5_gn_5_103860 Lactuca sativa HOM05D008139 ORTHO05D009872 3.1e-13 78.6 97 45.4
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 3.1e-13 78.6 87 50.6
Solyc12g089070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 4.0e-13 78.2 78 51.3
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 6.9e-13 77.4 78 50.0
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 9.0e-13 77.0 79 53.2
Nitab4.5_0003246g0060 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.2e-12 76.6 78 52.6
unitig_46.g17928 Utricularia gibba HOM05D008139 ORTHO05D009872 1.2e-12 76.6 79 49.4
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.5e-12 76.3 78 51.3
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 5.8e-12 74.3 78 47.4
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 5.8e-12 74.3 85 42.4
PGSC0003DMG400005169 Solanum tuberosum HOM05D008139 ORTHO05D009872 1.3e-11 73.2 84 45.2
Solyc04g080070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 2.2e-11 72.4 84 44.0
Sopen04g033660 Solanum pennellii HOM05D008139 ORTHO05D009872 2.2e-11 72.4 84 44.0
Nitab4.5_0000110g0510 Nicotiana tabacum HOM05D008139 ORTHO05D009872 2.9e-11 72.0 78 48.7
Sp4g14730 Schrenkiella parvula HOM05D011011 ORTHO05D009872 1.2e-09 66.6 78 38.5
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 1.6e-09 66.2 78 37.2
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 3.5e-09 65.1 78 37.2
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 4.6e-09 64.7 78 41.0
A03p18150 Brassica napus HOM05D011011 ORTHO05D009872 6.0e-09 64.3 79 40.5
BraA03t11075Z Brassica rapa HOM05D011011 ORTHO05D009872 6.0e-09 64.3 79 40.5
Potri.017G037400 Populus trichocarpa HOM05D008139 ORTHO05D009872 6.0e-09 64.3 63 47.6
Carub.0004s1371 Capsella rubella HOM05D011011 ORTHO05D009872 7.9e-09 63.9 78 37.2
Nitab4.5_0002296g0050 Nicotiana tabacum HOM05D008139 ORTHO05D009872 7.9e-09 63.9 69 46.4
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 1.3e-08 63.2 78 34.6
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 1.8e-08 62.8 78 38.5
BcaB01g03982 Brassica carinata HOM05D011011 ORTHO05D009872 2.3e-08 62.4 79 38.0
BcaB06g28588 Brassica carinata HOM05D011011 ORTHO05D009872 2.3e-08 62.4 78 35.9
BcaC01g05908 Brassica carinata HOM05D011011 ORTHO05D009872 2.3e-08 62.4 79 38.0
C03p21180 Brassica napus HOM05D011011 ORTHO05D009872 2.3e-08 62.4 79 38.0
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 3.0e-08 62.0 78 35.9
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 6.7e-08 60.8 79 38.0
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 1.5e-07 59.7 78 34.6
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 7.4e-07 57.4 79 34.2


User provided reference genes

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