Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 3.0e-304 1047.7 534 100.0
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 2.6e-300 1034.6 534 99.3
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 3.2e-298 1027.7 534 98.1
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.6e-270 935.6 534 88.6
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 4.5e-260 901.0 535 86.0
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 4.8e-254 880.9 534 83.9
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 9.4e-218 760.4 536 72.0
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 6.8e-216 754.2 540 71.1
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 2.6e-215 752.3 540 70.9
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 3.7e-214 748.4 540 70.9
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 5.5e-210 734.6 542 70.7
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 3.6e-209 731.9 542 69.9
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 1.2e-207 726.9 538 69.3
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 2.6e-207 725.7 534 69.5
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 7.5e-207 724.2 539 68.6
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.8e-206 722.2 538 69.1
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 6.3e-206 721.1 538 69.1
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 5.9e-204 714.5 541 69.1
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 5.9e-204 714.5 541 69.1
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 1.3e-203 713.4 537 68.2
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 6.6e-203 711.1 543 68.7
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 6.6e-203 711.1 539 68.5
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 3.6e-201 705.3 542 67.9
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.4e-200 703.4 531 68.2
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 6.8e-200 701.0 546 67.2
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 6.8e-200 701.0 539 65.7
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 2.6e-199 699.1 546 66.8
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 5.8e-199 698.0 541 67.5
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 1.3e-195 686.8 541 65.6
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 3.0e-195 685.6 541 64.9
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 8.6e-195 684.1 582 61.5
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 5.6e-194 681.4 502 68.7
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 2.1e-193 679.5 538 64.9
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 8.0e-193 677.6 537 64.6
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 1.1e-192 677.2 541 65.1
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 1.8e-192 676.4 540 65.4
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 2.3e-192 676.0 584 61.3
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 5.2e-192 674.9 583 61.4
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 2.0e-191 672.9 536 64.4
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 2.6e-191 672.5 537 65.9
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 4.4e-191 671.8 542 64.4
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 1.7e-190 669.8 539 63.6
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 3.7e-190 668.7 540 65.0
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 4.9e-190 668.3 543 63.7
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 1.1e-189 667.2 537 63.5
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 1.4e-189 666.8 539 64.6
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 1.2e-188 663.7 538 63.6
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 7.8e-188 661.0 539 63.8
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 2.3e-187 659.4 538 63.4
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 3.0e-187 659.1 544 64.5
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 8.6e-187 657.5 544 64.0
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 3.1e-184 649.0 540 63.1
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 8.9e-184 647.5 542 62.7
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 3.4e-183 645.6 546 63.0
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 7.5e-183 644.4 540 62.8
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 9.9e-183 644.0 526 64.1
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 1.3e-182 643.7 535 61.3
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.3e-182 643.7 546 62.8
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 1.7e-182 643.3 539 60.5
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 2.2e-182 642.9 540 61.5
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 4.9e-182 641.7 541 63.6
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 6.4e-182 641.3 522 64.6
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 1.1e-181 640.6 540 63.5
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 1.4e-181 640.2 542 60.9
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.9e-181 639.8 537 61.3
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 4.6e-180 635.2 539 59.9
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 7.8e-180 634.4 538 60.2
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 1.7e-179 633.3 538 60.2
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 2.3e-179 632.9 524 63.9
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 3.0e-179 632.5 543 62.6
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 3.9e-179 632.1 537 60.7
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 5.1e-179 631.7 539 59.7
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 5.1e-179 631.7 539 59.7
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.5e-178 630.2 584 58.7
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.9e-178 629.8 542 61.8
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.3e-178 629.0 520 63.3
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 3.3e-178 629.0 539 60.5
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 5.6e-178 628.2 539 62.7
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.6e-177 626.7 584 58.4
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.2e-177 624.8 520 62.9
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.1e-176 622.5 584 58.0
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 1.5e-175 620.2 528 61.4
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 6.4e-174 614.8 539 58.6
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 6.4e-174 614.8 541 58.8
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 6.4e-174 614.8 542 61.6
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 1.1e-173 614.0 527 61.9
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 1.4e-173 613.6 531 61.6
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 2.4e-173 612.8 547 60.0
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.2e-173 610.9 521 62.0
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 3.6e-169 599.0 542 60.1
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 4.7e-169 598.6 545 58.0
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 1.2e-167 594.0 536 58.2
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 1.5e-167 593.6 536 58.4
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 2.0e-167 593.2 514 62.5
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 3.0e-163 579.3 571 56.7
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 8.1e-161 571.2 504 57.1
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 2.7e-156 556.2 532 57.0
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 6.7e-155 551.6 547 53.7
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 2.5e-154 549.7 413 68.5
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.3e-153 547.4 547 53.9
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 2.7e-140 503.1 412 62.9
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 7.7e-135 485.0 420 60.5
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 1.4e-133 480.7 426 60.6
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 4.5e-127 459.1 543 48.8
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 1.4e-125 454.1 489 50.7
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 2.4e-120 436.8 357 62.7
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 6.5e-118 428.7 319 68.7
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 5.5e-117 425.6 569 40.9
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 9.4e-117 424.9 462 51.5
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 4.4e-114 416.0 486 48.8
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 3.8e-110 402.9 540 45.9
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.3e-106 389.8 424 53.3
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 2.7e-103 380.2 353 56.4
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 9.8e-98 361.7 512 40.0
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 3.1e-96 356.7 485 41.4
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 5.5e-93 345.9 317 59.3
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 1.5e-90 337.8 423 48.2
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 3.7e-89 333.2 507 41.8
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 1.8e-88 330.9 507 41.6
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.0e-87 327.4 263 60.1
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 2.7e-87 327.0 485 39.4
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 7.8e-87 325.5 517 37.1
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 3.1e-83 313.5 346 51.4
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 7.3e-69 265.8 275 55.3
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 3.5e-63 246.9 375 43.2
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 6.0e-63 246.1 204 63.2
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 6.4e-57 226.1 167 66.5
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.7e-41 174.9 112 81.2
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.1e-40 172.2 123 71.5
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 4.2e-40 170.2 580 25.7
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 2.7e-39 167.5 176 55.1
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 7.6e-34 149.4 206 48.1
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.0e-33 149.1 105 71.4
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 1.9e-32 144.8 113 67.3
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 7.1e-32 142.9 507 28.8
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 1.9e-29 134.8 115 60.9
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.4e-29 132.9 104 65.4
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 9.6e-29 132.5 97 69.1
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 4.8e-28 130.2 91 67.0
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 3.1e-27 127.5 455 28.8
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 4.0e-27 127.1 89 73.0
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 9.3e-24 115.9 500 25.4
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 2.7e-23 114.4 86 69.8
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 7.9e-15 86.3 161 36.6
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 1.4e-14 85.5 122 45.1
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 4.3e-13 80.5 89 46.1
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 3.1e-11 74.3 576 23.3
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 4.1e-11 73.9 83 51.8
Cfa026360 Carpinus fangiana HOM05D001925 ORTHO05D005701 6.9e-11 73.2 519 23.3
FAN22G1210 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.0e-06 57.8 64 50.0


User provided reference genes

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