Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 2.5e-34 148.3 78 100.0
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 5.9e-28 127.1 78 84.6
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 5.9e-28 127.1 78 84.6
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.3e-27 125.9 78 84.6
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 9.4e-26 119.8 78 83.3
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 4.0e-24 114.4 78 75.6
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 8.8e-24 113.2 78 76.9
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 1.1e-18 96.3 78 64.1
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 9.5e-18 93.2 78 64.1
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 1.6e-17 92.4 79 64.6
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 2.8e-17 91.7 78 62.8
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 6.1e-17 90.5 78 61.5
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 1.0e-16 89.7 78 60.3
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 1.4e-16 89.4 78 59.0
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 1.4e-16 89.4 78 61.5
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 1.8e-16 89.0 78 60.3
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 2.3e-16 88.6 78 60.3
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 3.0e-16 88.2 67 68.7
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 4.0e-16 87.8 66 66.7
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 5.2e-16 87.4 67 68.7
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 6.8e-16 87.0 77 62.3
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 6.8e-16 87.0 77 62.3
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 8.9e-16 86.7 77 59.7
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 1.2e-15 86.3 78 60.3
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 2.0e-15 85.5 79 60.8
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 2.6e-15 85.1 78 60.3
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 3.4e-15 84.7 79 60.8
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 7.5e-15 83.6 79 59.5
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 7.5e-15 83.6 64 70.3
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 9.8e-15 83.2 65 69.2
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 9.8e-15 83.2 67 64.2
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 2.2e-14 82.0 69 62.3
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 2.2e-14 82.0 66 62.1
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 4.9e-14 80.9 68 61.8
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 6.3e-14 80.5 77 55.8
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 8.3e-14 80.1 66 65.2
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 1.4e-13 79.3 78 56.4
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 1.8e-13 79.0 78 56.4
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 1.8e-13 79.0 64 67.2
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 2.4e-13 78.6 61 65.6
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 3.2e-13 78.2 64 64.1
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 7.0e-13 77.0 67 62.7
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 7.0e-13 77.0 78 55.1
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 9.2e-13 76.6 69 58.0
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 9.2e-13 76.6 64 65.6
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 9.2e-13 76.6 64 65.6
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 1.6e-12 75.9 78 56.4
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 1.6e-12 75.9 63 66.7
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 1.6e-12 75.9 64 64.1
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 3.5e-12 74.7 67 61.2
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 7.8e-12 73.6 78 56.4
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 1.3e-11 72.8 78 56.4
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 1.3e-11 72.8 78 51.3
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 1.3e-11 72.8 78 53.8
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 1.7e-11 72.4 78 53.8
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 1.7e-11 72.4 66 59.1
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 1.7e-11 72.4 78 53.8
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 2.3e-11 72.0 68 54.4
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 2.9e-11 71.6 78 51.3
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 5.0e-11 70.9 67 53.7
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 5.0e-11 70.9 67 53.7
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 1.1e-10 69.7 67 53.7
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 1.1e-10 69.7 67 53.7
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 1.5e-10 69.3 67 52.2
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 1.5e-10 69.3 75 53.3
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 1.5e-10 69.3 67 56.7
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 1.9e-10 68.9 69 55.1
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 1.9e-10 68.9 67 52.2
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 2.5e-10 68.6 67 50.7
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 4.3e-10 67.8 61 54.1
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 7.3e-10 67.0 49 65.3
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 7.3e-10 67.0 47 68.1
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 1.2e-09 66.2 67 53.7
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 1.6e-09 65.9 67 58.2
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 2.1e-09 65.5 67 50.7
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 2.1e-09 65.5 61 55.7
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 2.1e-09 65.5 59 59.3
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 2.8e-09 65.1 55 61.8
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 3.6e-09 64.7 67 50.7
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 3.6e-09 64.7 58 60.3
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 8.0e-09 63.5 68 60.3
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.0e-08 63.2 59 52.5
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.0e-08 63.2 59 52.5
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 1.4e-08 62.8 67 49.3
AUR62029317 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.4e-08 62.8 62 53.2
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 2.3e-08 62.0 54 57.4
CAN.G1320.10 Capsicum annuum HOM05D007448 ORTHO05D009392 2.3e-08 62.0 47 68.1
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 4.0e-08 61.2 48 64.6
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 6.8e-08 60.5 46 63.0
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 1.2e-07 59.7 52 55.8
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 2.0e-07 58.9 55 54.5
MELO3C030681.2 Cucumis melo HOM05D007448 ORTHO05D009392 7.5e-07 57.0 48 50.0
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 1.3e-06 56.2 75 45.3
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 2.2e-06 55.5 50 54.0
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 2.2e-06 55.5 69 40.6
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 3.7e-06 54.7 59 50.8


User provided reference genes

Program Settings