Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.6e-46 189.1 100 100.0
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.6e-46 189.1 100 100.0
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 1.6e-46 189.1 100 100.0
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.1e-30 135.6 98 74.5
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 4.0e-29 131.3 98 70.4
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 9.9e-28 126.7 98 65.3
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 8.4e-27 123.6 92 65.2
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 1.4e-26 122.9 98 67.3
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.4e-26 122.9 92 63.0
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 2.4e-26 122.1 98 66.3
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 1.6e-25 119.4 99 61.6
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 2.1e-25 119.0 92 59.8
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 3.5e-25 118.2 98 65.3
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 7.8e-25 117.1 98 62.2
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 3.0e-24 115.2 98 68.4
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 3.9e-24 114.8 99 58.6
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 8.7e-24 113.6 100 58.0
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 1.5e-23 112.8 99 58.6
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.9e-23 112.5 100 66.0
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.3e-23 111.3 100 65.0
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 4.3e-23 111.3 100 65.0
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 7.3e-23 110.5 87 67.8
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 1.3e-22 109.8 98 55.1
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 1.3e-22 109.8 91 59.3
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 1.6e-22 109.4 98 59.2
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 2.1e-22 109.0 98 57.1
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 2.8e-22 108.6 98 59.2
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 6.2e-22 107.5 100 57.0
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.4e-21 106.3 83 60.2
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 1.8e-21 105.9 97 55.7
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 2.4e-21 105.5 86 58.1
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 3.1e-21 105.1 86 57.0
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 9.0e-21 103.6 77 64.9
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 2.0e-20 102.4 99 54.5
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 5.8e-20 100.9 100 51.0
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 5.8e-20 100.9 102 51.0
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 9.9e-20 100.1 86 54.7
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 1.3e-19 99.8 98 52.0
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 1.7e-19 99.4 91 51.6
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 1.7e-19 99.4 90 57.8
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 2.2e-19 99.0 98 50.0
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 2.2e-19 99.0 80 58.8
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 2.9e-19 98.6 86 53.5
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 2.9e-19 98.6 98 56.1
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 3.8e-19 98.2 82 63.4
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 1.1e-18 96.7 67 64.2
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 1.4e-18 96.3 111 52.3
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.4e-18 96.3 90 51.1
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.4e-18 96.3 99 50.5
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 1.4e-18 96.3 98 53.1
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 1.4e-18 96.3 91 46.2
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.9e-18 95.9 99 51.5
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 2.4e-18 95.5 91 49.5
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 2.4e-18 95.5 91 49.5
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 2.4e-18 95.5 88 55.7
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 2.4e-18 95.5 98 57.1
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 3.2e-18 95.1 92 52.2
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 3.2e-18 95.1 64 62.5
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 3.2e-18 95.1 64 62.5
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 3.2e-18 95.1 83 59.0
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 4.2e-18 94.7 78 55.1
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 5.4e-18 94.4 84 56.0
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 7.1e-18 94.0 97 54.6
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 9.3e-18 93.6 92 52.2
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 1.2e-17 93.2 83 53.0
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 1.2e-17 93.2 96 55.2
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 1.6e-17 92.8 90 53.3
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 1.6e-17 92.8 87 52.9
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.1e-17 92.4 89 49.4
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 2.7e-17 92.0 101 46.5
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 2.7e-17 92.0 69 60.9
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 2.7e-17 92.0 98 54.1
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 2.7e-17 92.0 100 50.0
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 2.7e-17 92.0 83 49.4
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 4.6e-17 91.3 99 50.5
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 6.0e-17 90.9 100 50.0
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 6.0e-17 90.9 87 52.9
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 6.0e-17 90.9 98 46.9
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 6.0e-17 90.9 93 51.6
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 7.9e-17 90.5 91 50.5
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 1.0e-16 90.1 100 49.0
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.0e-16 90.1 100 49.0
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 1.0e-16 90.1 84 58.3
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 1.3e-16 89.7 90 53.3
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 1.3e-16 89.7 98 44.9
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 1.8e-16 89.4 87 51.7
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.8e-16 89.4 77 57.1
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 3.0e-16 88.6 97 51.5
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 3.0e-16 88.6 80 56.2
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 5.1e-16 87.8 96 51.0
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 5.1e-16 87.8 100 51.0
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 6.7e-16 87.4 98 48.0
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 6.7e-16 87.4 98 48.0
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 6.7e-16 87.4 98 48.0
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 8.7e-16 87.0 93 48.4
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 8.7e-16 87.0 67 56.7
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 8.7e-16 87.0 99 48.5
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 1.1e-15 86.7 90 48.9
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.9e-15 85.9 102 42.2
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 2.5e-15 85.5 98 45.9
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 3.3e-15 85.1 82 56.1
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 4.3e-15 84.7 83 51.8
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 4.3e-15 84.7 64 54.7
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 5.6e-15 84.3 87 48.3
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 5.6e-15 84.3 83 53.0
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 5.6e-15 84.3 99 48.5
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 5.6e-15 84.3 97 45.4
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 5.6e-15 84.3 89 47.2
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 3.7e-14 81.6 98 50.0
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 3.7e-14 81.6 85 51.8
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 1.1e-13 80.1 83 50.6
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 2.0e-12 75.9 90 43.3
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.6e-12 75.5 88 44.3
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 3.4e-12 75.1 90 43.3
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 5.8e-12 74.3 91 42.9
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 5.8e-12 74.3 90 43.3
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 7.6e-12 73.9 90 42.2
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 7.6e-12 73.9 52 61.5
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 7.6e-12 73.9 90 50.0
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.3e-11 73.2 90 43.3
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 1.3e-11 73.2 85 41.2
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.7e-11 72.8 90 41.1
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.9e-11 72.0 92 43.5
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 4.9e-11 71.2 82 42.7
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 8.4e-11 70.5 67 47.8
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.5e-10 68.9 90 38.9
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 3.2e-10 68.6 98 41.8
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 4.2e-10 68.2 79 41.8
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 4.2e-10 68.2 90 41.1
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 9.3e-10 67.0 89 38.2
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 9.3e-10 67.0 89 38.2
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 1.2e-09 66.6 89 37.1
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 1.2e-09 66.6 89 37.1
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 3.0e-08 62.0 78 39.7
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 1.9e-07 59.3 62 43.5
SEGI_28459 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 1.3e-06 56.6 82 37.8
Os08g0546300 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 2.1e-06 55.8 62 40.3


User provided reference genes

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