Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.2e-176 623.2 347 100.0
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.2e-159 565.8 328 93.9
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.3e-147 525.4 328 88.7
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 2.8e-114 416.0 335 75.5
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 6.5e-111 404.8 339 68.7
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.2e-110 402.5 341 70.7
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.5e-102 377.1 341 66.9
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 8.0e-101 371.3 341 67.4
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.8e-100 370.2 339 66.4
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 2.9e-95 352.8 349 61.0
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.6e-93 347.1 339 63.4
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 2.3e-92 343.2 339 61.1
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.2e-91 340.9 338 61.2
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 1.2e-91 340.9 339 61.4
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 5.8e-91 338.6 359 59.9
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 3.7e-90 335.9 349 60.7
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 1.1e-89 334.3 341 56.9
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 5.4e-89 332.0 366 54.6
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 1.8e-84 317.0 354 57.3
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 1.8e-84 317.0 340 60.6
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 2.9e-82 309.7 339 58.4
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 4.9e-82 308.9 348 57.5
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 1.2e-80 304.3 339 58.1
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 3.5e-80 302.8 351 57.0
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 3.0e-79 299.7 341 55.7
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 3.0e-79 299.7 335 56.4
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 3.9e-79 299.3 344 57.3
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 1.9e-78 297.0 335 56.1
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 9.5e-78 294.7 318 58.5
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.1e-77 293.5 325 60.3
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 8.1e-77 291.6 341 54.8
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 8.1e-77 291.6 327 59.3
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.4e-76 290.8 324 59.3
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 1.4e-76 290.8 328 58.2
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 5.2e-76 288.9 340 56.2
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 6.8e-76 288.5 341 56.0
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 1.2e-75 287.7 340 56.5
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 2.6e-75 286.6 325 57.5
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 5.8e-75 285.4 340 56.5
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 7.6e-75 285.0 348 55.2
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 1.3e-74 284.3 333 51.7
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.7e-74 283.9 343 55.7
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 1.7e-74 283.9 345 56.2
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 4.9e-74 282.3 339 56.0
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 6.4e-74 282.0 345 54.5
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 6.4e-74 282.0 343 56.6
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 8.3e-74 281.6 337 56.1
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 1.9e-73 280.4 333 54.7
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 3.2e-73 279.6 346 51.7
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 3.5e-72 276.2 340 55.6
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 6.0e-72 275.4 336 54.5
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 7.8e-72 275.0 299 55.5
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 1.0e-71 274.6 375 46.7
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.3e-71 273.5 339 53.7
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 8.6e-71 271.6 336 50.0
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 8.6e-71 271.6 332 55.7
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 1.9e-70 270.4 334 48.8
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 2.5e-70 270.0 249 69.1
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 1.6e-69 267.3 332 54.5
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 1.6e-69 267.3 331 51.4
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 1.6e-69 267.3 332 48.5
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 8.1e-69 265.0 329 48.3
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 2.6e-67 260.0 344 53.8
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 4.4e-67 259.2 333 56.8
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 2.2e-66 256.9 331 55.6
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 4.9e-66 255.8 345 51.0
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 6.4e-66 255.4 338 51.2
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 1.1e-65 254.6 512 40.6
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 1.2e-64 251.1 351 46.2
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 2.7e-64 250.0 300 50.7
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.3e-63 247.7 307 52.8
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 2.3e-63 246.9 328 46.3
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 3.9e-63 246.1 328 46.3
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 5.1e-63 245.7 315 53.0
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 1.9e-62 243.8 342 45.3
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 4.3e-62 242.7 324 52.2
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 7.3e-62 241.9 334 46.1
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 3.1e-60 236.5 356 44.9
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 1.2e-59 234.6 260 58.5
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 1.5e-59 234.2 340 49.1
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 2.0e-59 233.8 333 45.3
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 2.0e-59 233.8 281 56.2
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 3.4e-59 233.0 343 48.7
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 3.4e-59 233.0 305 50.8
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 4.4e-59 232.6 301 46.5
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 7.6e-59 231.9 285 54.4
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 1.3e-58 231.1 336 45.8
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 1.7e-58 230.7 338 49.4
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 1.7e-58 230.7 332 50.9
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 2.2e-58 230.3 309 51.1
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 6.4e-58 228.8 291 46.4
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 6.4e-58 228.8 440 40.7
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 8.4e-58 228.4 312 53.2
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 1.4e-57 227.6 333 48.9
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 1.9e-57 227.3 334 43.7
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 1.9e-57 227.3 334 43.7
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 3.3e-54 216.5 310 49.7
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 4.3e-54 216.1 306 44.8
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 2.1e-53 213.8 312 43.9
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 2.8e-53 213.4 259 56.8
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 5.3e-52 209.1 354 42.1
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.2e-51 208.0 340 40.3
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 9.9e-51 204.9 281 43.4
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 2.9e-50 203.4 329 47.1
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 3.8e-50 203.0 347 42.1
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 3.8e-50 203.0 236 51.3
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 4.9e-50 202.6 287 44.3
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 6.4e-50 202.2 281 47.0
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.1e-49 201.4 343 42.6
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 2.4e-49 200.3 264 52.7
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 5.4e-49 199.1 347 38.6
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 1.2e-48 198.0 338 39.9
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 2.7e-48 196.8 326 39.6
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 3.5e-48 196.4 291 41.9
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 8.7e-47 191.8 251 51.4
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 3.3e-46 189.9 336 38.7
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 7.4e-46 188.7 336 39.6
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.2e-40 171.4 293 40.3
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 4.3e-38 162.9 285 38.6
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 2.8e-37 160.2 326 36.8
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 3.4e-35 153.3 328 35.1
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 1.0e-34 151.8 286 36.4
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 4.2e-33 146.4 285 36.8
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 9.3e-33 145.2 307 39.1
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 7.9e-32 142.1 307 37.1
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.5e-30 137.1 119 63.0
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.6e-29 134.4 190 43.2
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 2.2e-29 134.0 228 37.7
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 9.0e-28 128.6 342 36.8
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.2e-24 118.2 265 41.5
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.0e-22 110.9 92 62.0
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 2.5e-22 110.5 78 74.4
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 9.7e-22 108.6 257 36.2
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.8e-21 107.1 129 53.5
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.8e-20 104.4 288 29.9
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 4.1e-20 103.2 124 51.6
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.3e-18 98.2 98 54.1
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 2.9e-18 97.1 106 52.8
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 8.5e-18 95.5 251 38.2
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.6e-16 91.3 63 73.0
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 7.4e-14 82.4 93 51.6
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 1.4e-12 78.2 117 43.6
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 3.1e-12 77.0 89 47.2
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 9.1e-12 75.5 311 27.0
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 5.0e-10 69.7 113 42.5
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 1.1e-09 68.6 99 42.4
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 7.2e-09 65.9 111 41.4
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 7.2e-09 65.9 83 45.8


User provided reference genes

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