Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 0.0e+00 1363.6 674 100.0
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 0.0e+00 1346.3 674 99.0
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 0.0e+00 1344.3 674 98.8
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 0.0e+00 1110.5 674 82.8
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 4.3e-276 954.5 658 72.3
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 2.4e-274 948.7 666 70.1
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 2.0e-273 945.7 654 72.3
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 1.3e-272 943.0 656 72.3
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 1.6e-270 936.0 672 69.5
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 1.4e-266 922.9 669 67.9
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 2.6e-265 918.7 677 68.1
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 1.7e-264 916.0 658 72.6
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 8.4e-264 913.7 663 68.9
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 4.6e-262 907.9 682 68.3
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 6.0e-262 907.5 619 71.9
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 3.0e-261 905.2 663 67.3
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 1.1e-260 903.3 676 70.1
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 1.5e-260 902.9 667 68.2
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 8.2e-259 897.1 648 69.8
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 6.5e-256 887.5 664 65.5
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 1.9e-255 885.9 668 65.0
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 4.6e-254 881.3 673 64.8
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 1.3e-251 873.2 656 67.7
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.5e-249 866.3 671 64.4
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 4.5e-249 864.8 654 66.1
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 5.9e-249 864.4 699 61.8
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 1.1e-247 860.1 648 66.7
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 1.4e-247 859.8 671 64.4
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 7.2e-247 857.4 671 63.9
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 9.3e-247 857.1 669 64.7
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 2.7e-246 855.5 655 65.2
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 3.6e-246 855.1 656 66.8
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 4.6e-246 854.7 667 64.8
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.1e-244 850.1 749 57.5
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 1.5e-244 849.7 662 65.4
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 3.3e-244 848.6 668 65.0
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 7.4e-244 847.4 674 65.3
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 9.7e-244 847.0 657 65.9
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 3.7e-243 845.1 665 65.0
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 1.4e-242 843.2 669 64.6
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 1.8e-242 842.8 651 64.8
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 2.4e-242 842.4 728 61.5
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 9.1e-242 840.5 675 64.0
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 9.1e-242 840.5 668 64.1
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 1.2e-241 840.1 658 65.0
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 1.2e-241 840.1 651 64.4
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 1.5e-241 839.7 654 65.3
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 2.6e-241 839.0 673 63.3
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 7.7e-241 837.4 661 63.4
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 1.0e-240 837.0 650 65.2
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 2.2e-240 835.9 667 64.8
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 3.8e-240 835.1 673 63.3
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 1.2e-238 830.1 667 62.5
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 2.3e-237 825.9 660 62.6
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 2.3e-237 825.9 655 63.8
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 2.2e-235 819.3 649 64.4
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 1.4e-234 816.6 652 64.1
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 5.9e-233 811.2 693 59.3
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 1.0e-232 810.4 674 60.7
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 1.7e-232 809.7 672 61.2
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 1.1e-231 807.0 670 60.6
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 3.2e-231 805.4 669 60.1
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 1.6e-230 803.1 671 62.4
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 1.6e-230 803.1 680 60.0
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 8.0e-230 800.8 663 60.9
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 1.1e-228 797.0 675 59.9
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 3.3e-228 795.4 652 62.3
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 9.7e-228 793.9 706 58.8
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 2.2e-227 792.7 687 58.4
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 2.8e-227 792.3 690 58.4
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 4.5e-225 785.0 690 58.6
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 1.0e-224 783.9 672 58.9
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 3.8e-224 781.9 692 58.1
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 1.1e-223 780.4 692 58.7
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 1.5e-223 780.0 651 59.6
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 1.9e-223 779.6 673 58.8
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 4.2e-223 778.5 692 58.7
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 4.7e-222 775.0 654 59.5
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 1.6e-214 750.0 679 59.6
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 4.4e-212 741.9 672 57.4
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 3.7e-211 738.8 510 72.5
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 2.9e-208 729.2 662 57.6
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 2.6e-204 716.1 502 71.5
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 5.7e-204 714.9 650 57.4
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 9.8e-204 714.1 656 56.9
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 5.2e-197 691.8 664 56.8
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 3.2e-194 682.6 517 68.1
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 6.4e-187 658.3 481 69.4
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 1.9e-186 656.8 652 52.9
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 9.2e-178 627.9 656 52.6
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 1.2e-174 617.5 674 50.0
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 3.4e-172 609.4 524 61.8
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 3.8e-163 579.3 536 58.8
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 2.9e-155 553.1 624 48.7
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 7.4e-151 538.5 651 47.0
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 3.7e-142 509.6 413 63.9
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 2.7e-129 466.8 647 39.7
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 2.3e-120 437.2 664 38.7
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 6.3e-102 375.9 399 54.1
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 2.6e-95 354.0 245 71.0
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.6e-84 318.2 466 41.2
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.4e-77 295.0 518 37.1
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 1.3e-75 288.5 627 34.3
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 4.2e-53 213.8 231 45.9
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.7e-51 208.4 144 67.4
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.3e-49 202.2 177 52.5
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 9.9e-39 166.0 405 30.4
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.1e-37 162.5 232 40.5
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 3.2e-37 161.0 94 70.2
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 5.6e-34 150.2 89 77.5
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 7.6e-31 139.8 87 77.0
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 2.8e-25 121.3 111 54.1
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 4.8e-25 120.6 157 45.2
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 2.5e-21 108.2 118 56.8
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 5.3e-16 90.5 100 53.0
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 1.3e-14 85.9 70 62.9
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 1.3e-14 85.9 74 59.5
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 2.5e-13 81.6 90 54.4
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 2.5e-13 81.6 66 62.1


User provided reference genes

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