Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 4.3e-171 604.7 348 100.0
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 4.8e-170 601.3 346 100.0
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 2.5e-163 578.9 346 96.2
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.6e-139 499.2 353 80.5
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 4.5e-136 488.4 354 79.1
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 1.6e-133 479.9 351 78.9
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.1e-126 457.2 352 75.9
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 5.6e-110 401.7 350 65.7
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 1.0e-108 397.5 355 65.1
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 9.8e-107 391.0 353 64.0
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 1.7e-106 390.2 351 64.1
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 5.9e-104 381.7 355 63.7
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 5.6e-102 375.2 353 61.8
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 2.3e-100 369.8 352 63.1
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 4.0e-100 369.0 351 61.8
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 4.0e-100 369.0 350 63.7
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 2.0e-99 366.7 352 62.5
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 4.4e-99 365.5 356 61.8
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 9.8e-99 364.4 351 60.1
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 9.8e-99 364.4 351 60.1
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 1.3e-98 364.0 353 62.6
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.3e-98 364.0 353 60.3
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.3e-98 364.0 350 62.6
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.7e-98 363.6 353 60.9
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 1.6e-96 357.1 350 61.7
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 4.6e-96 355.5 338 64.5
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 2.3e-95 353.2 371 59.8
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 3.0e-95 352.8 354 60.5
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 3.9e-95 352.4 361 59.6
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.1e-94 350.9 351 61.0
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 3.3e-94 349.4 371 59.3
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 3.3e-94 349.4 351 60.4
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 5.6e-94 348.6 351 59.8
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 7.3e-94 348.2 345 60.9
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 3.6e-93 345.9 354 59.3
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.1e-92 344.4 354 59.3
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 2.3e-92 343.2 358 58.9
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 2.3e-92 343.2 354 58.5
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.3e-92 343.2 354 58.5
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 4.0e-92 342.4 350 60.0
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.8e-92 341.7 354 58.5
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.2e-91 340.9 354 60.7
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 1.5e-91 340.5 351 59.5
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 1.5e-91 340.5 351 59.5
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 1.5e-91 340.5 351 59.8
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 1.5e-91 340.5 353 58.1
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 2.0e-91 340.1 356 59.3
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 2.0e-91 340.1 356 59.3
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 2.6e-91 339.7 348 60.3
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 5.8e-91 338.6 352 63.1
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 5.8e-91 338.6 346 58.1
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 1.3e-90 337.4 352 58.0
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.9e-90 335.5 351 58.1
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 6.4e-90 335.1 385 55.3
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 8.3e-90 334.7 347 59.1
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 1.4e-89 334.0 354 57.9
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 3.2e-89 332.8 357 57.4
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 9.2e-89 331.3 347 58.2
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 9.2e-89 331.3 352 58.5
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 4.6e-88 328.9 352 60.5
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 1.3e-87 327.4 340 59.4
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 5.6e-86 322.0 356 56.2
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 2.8e-85 319.7 344 57.3
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 4.7e-85 318.9 350 57.1
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 6.2e-85 318.5 353 56.4
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 6.2e-85 318.5 353 56.4
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 1.1e-84 317.8 355 56.1
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 3.4e-83 312.8 353 54.4
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 7.6e-83 311.6 358 56.4
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 7.6e-83 311.6 351 55.0
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 2.9e-82 309.7 348 55.5
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 1.4e-81 307.4 336 55.7
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 5.4e-81 305.4 338 55.3
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.2e-80 304.3 351 55.6
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 6.6e-79 298.5 349 53.6
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 5.6e-78 295.4 354 53.4
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 5.6e-78 295.4 356 51.4
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 9.6e-78 294.7 358 53.1
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 3.6e-77 292.7 355 52.4
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 4.7e-77 292.4 323 55.4
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 8.1e-77 291.6 349 55.9
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 3.1e-76 289.7 345 54.2
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 1.7e-74 283.9 370 50.5
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 4.9e-74 282.3 338 53.3
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 3.5e-72 276.2 388 46.6
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 6.0e-72 275.4 332 57.2
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 2.3e-71 273.5 355 50.4
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 2.3e-71 273.5 344 53.5
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 1.9e-70 270.4 328 55.2
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.9e-70 270.4 362 52.5
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 2.1e-69 266.9 358 51.1
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 4.4e-67 259.2 276 58.3
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 6.4e-66 255.4 299 51.8
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 8.4e-66 255.0 352 49.4
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 7.9e-64 248.4 335 49.6
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 1.0e-63 248.1 346 46.5
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 4.3e-62 242.7 351 45.3
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 1.6e-61 240.7 353 48.7
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 4.8e-61 239.2 352 44.9
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 6.2e-61 238.8 367 45.0
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 1.4e-60 237.7 348 47.4
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 2.4e-60 236.9 349 49.3
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 1.2e-59 234.6 337 47.2
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 1.5e-59 234.2 345 45.8
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.6e-59 233.4 344 45.1
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 5.8e-59 232.3 357 45.7
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 5.8e-59 232.3 351 47.9
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 2.2e-58 230.3 341 49.0
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 8.4e-58 228.4 335 46.6
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 4.2e-57 226.1 344 44.5
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 7.9e-56 221.9 337 47.2
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 6.7e-55 218.8 332 44.3
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 6.7e-55 218.8 332 44.3
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 1.1e-52 211.5 291 53.6
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 2.6e-51 206.8 360 45.6
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.3e-50 204.5 314 45.5
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 7.9e-48 195.3 353 41.6
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 9.6e-46 188.3 357 41.7
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 1.0e-42 178.3 307 42.7
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 6.5e-42 175.6 318 39.6
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 6.5e-42 175.6 206 55.3
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.9e-41 174.1 370 40.8
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 4.2e-41 172.9 309 43.0
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 3.0e-39 166.8 349 39.8
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 3.9e-39 166.4 335 37.6
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.5e-38 163.7 130 71.5
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 2.2e-37 160.6 163 57.7
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 1.8e-36 157.5 351 36.8
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.0e-35 154.1 279 45.9
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 4.5e-35 152.9 357 38.1
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 5.0e-34 149.4 327 36.1
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 5.0e-34 149.4 318 38.4
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 2.4e-28 130.6 194 53.6
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 7.7e-27 125.6 147 54.4
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 6.5e-26 122.5 106 60.4
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 7.4e-22 109.0 249 35.3
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 1.3e-21 108.2 428 29.9
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 7.7e-19 99.0 170 44.1
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 7.7e-19 99.0 102 54.9
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 1.9e-17 94.4 342 30.7
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 1.9e-17 94.4 165 41.8
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 5.5e-17 92.8 119 56.3
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 1.0e-15 88.6 134 45.5
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.3e-10 71.6 92 48.9
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 5.5e-09 66.2 52 69.2
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.6e-08 63.5 200 31.5
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 6.1e-08 62.8 146 35.6
Cre02.g082300 Chlamydomonas reinhardtii HOM05D004638 ORTHO05D005443 5.2e-07 59.7 407 25.1
Lsat_1_v5_gn_9_30260 Lactuca sativa HOM05D004638 ORTHO05D005443 2.0e-06 57.8 60 55.0
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 2.6e-06 57.4 63 47.6


User provided reference genes

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