Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 4.0e-190 667.9 338 100.0
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 4.5e-189 664.5 338 99.4
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 7.6e-189 663.7 338 99.4
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 2.8e-183 645.2 338 95.9
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 2.4e-182 642.1 338 95.0
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 3.1e-182 641.7 338 95.0
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 1.7e-180 636.0 338 93.5
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 2.2e-180 635.6 338 93.5
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 8.4e-180 633.6 338 92.9
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 2.1e-178 629.0 338 92.0
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.3e-177 626.3 335 91.9
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.3e-177 625.5 334 92.5
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 3.0e-177 625.2 338 91.4
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.5e-176 622.9 333 92.5
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 3.3e-176 621.7 338 90.8
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 4.3e-176 621.3 339 90.9
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 7.4e-176 620.5 338 90.5
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 9.6e-176 620.2 338 90.5
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 2.8e-175 618.6 338 90.2
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.1e-174 616.7 339 90.0
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.8e-174 615.9 338 90.2
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.8e-174 615.9 338 90.2
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.8e-174 615.9 338 90.2
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 3.1e-174 615.1 338 89.3
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 5.3e-174 614.4 338 89.6
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 6.9e-174 614.0 338 89.3
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 6.9e-174 614.0 339 89.7
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 6.9e-174 614.0 332 91.0
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 1.2e-173 613.2 333 90.4
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 1.5e-173 612.8 338 89.9
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 1.5e-173 612.8 336 89.6
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 2.6e-173 612.1 338 90.8
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 2.6e-173 612.1 338 90.2
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 2.6e-173 612.1 338 88.8
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.6e-173 612.1 339 88.5
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 2.6e-173 612.1 338 89.9
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 3.4e-173 611.7 339 89.7
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 3.4e-173 611.7 338 89.6
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 4.5e-173 611.3 337 89.9
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 4.5e-173 611.3 338 88.8
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 5.9e-173 610.9 333 91.3
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 5.9e-173 610.9 339 87.9
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 7.6e-173 610.5 337 89.3
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 1.0e-172 610.1 338 89.3
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 1.3e-172 609.8 338 88.8
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 1.3e-172 609.8 339 89.1
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.2e-172 609.0 335 89.3
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 2.9e-172 608.6 338 88.8
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 2.9e-172 608.6 338 88.8
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 2.9e-172 608.6 333 90.4
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 3.8e-172 608.2 338 89.1
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 6.5e-172 607.4 338 88.8
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 8.4e-172 607.1 338 88.5
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 8.4e-172 607.1 339 88.5
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 1.1e-171 606.7 339 88.5
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 1.1e-171 606.7 339 89.7
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.1e-171 606.7 339 88.5
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 4.2e-171 604.7 339 87.6
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 4.2e-171 604.7 332 89.8
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 7.2e-171 604.0 339 88.5
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 7.9e-170 600.5 337 88.4
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 7.9e-170 600.5 332 88.6
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 2.3e-169 599.0 337 87.5
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 2.3e-169 599.0 339 87.3
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 5.1e-169 597.8 339 87.0
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 6.7e-169 597.4 332 88.6
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 8.7e-169 597.0 341 87.1
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 4.3e-168 594.7 333 88.0
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 4.3e-168 594.7 340 86.8
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 5.7e-168 594.3 339 86.1
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 5.7e-168 594.3 325 90.8
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 1.6e-167 592.8 339 85.8
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.6e-167 592.8 339 85.8
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 1.6e-167 592.8 334 88.0
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 4.8e-167 591.3 338 84.3
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.8e-166 589.3 340 85.0
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 1.8e-166 589.3 332 86.7
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 2.4e-166 589.0 338 85.2
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 4.1e-166 588.2 339 85.0
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 6.9e-166 587.4 354 83.9
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 4.5e-165 584.7 316 91.1
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.3e-164 583.2 380 78.4
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 5.0e-164 581.3 317 90.2
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 6.5e-164 580.9 335 84.8
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 1.9e-163 579.3 319 90.6
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 5.5e-163 577.8 309 90.9
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 1.6e-162 576.2 338 86.1
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 3.6e-162 575.1 336 83.3
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 3.6e-162 575.1 332 85.2
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 4.6e-162 574.7 338 82.2
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 4.6e-162 574.7 336 83.3
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 4.6e-162 574.7 335 83.6
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 6.1e-162 574.3 336 83.3
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 7.9e-162 573.9 336 82.7
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 1.4e-161 573.2 338 87.3
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 1.4e-161 573.2 309 90.6
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 1.8e-161 572.8 336 83.3
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 2.3e-161 572.4 335 83.3
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 3.0e-161 572.0 335 83.0
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 3.9e-161 571.6 336 82.7
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 5.1e-161 571.2 335 82.7
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 6.7e-161 570.9 337 82.2
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 6.7e-161 570.9 335 82.7
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 8.8e-161 570.5 334 83.2
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 1.1e-160 570.1 338 82.0
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 1.5e-160 569.7 336 82.7
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 2.6e-160 568.9 336 82.4
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 2.6e-160 568.9 337 82.2
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 3.3e-160 568.5 335 82.4
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 5.7e-160 567.8 319 86.5
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 5.7e-160 567.8 336 83.0
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 7.4e-160 567.4 336 81.8
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 4.8e-159 564.7 327 83.2
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 4.8e-159 564.7 339 84.4
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 8.2e-159 563.9 320 86.6
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 5.3e-158 561.2 335 81.5
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 6.9e-158 560.8 351 78.9
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 4.2e-155 551.6 343 79.3
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 7.9e-154 547.4 336 77.1
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 2.6e-152 542.3 341 76.0
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 2.8e-151 538.9 334 78.1
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 4.8e-151 538.1 316 82.9
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 1.6e-149 533.1 378 73.8
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 1.7e-148 529.6 420 68.1
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.5e-147 524.6 334 74.9
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 7.2e-147 524.2 334 74.9
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 2.8e-143 512.3 363 72.5
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 7.7e-141 504.2 295 85.4
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 3.8e-140 501.9 264 94.7
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 5.0e-140 501.5 338 77.8
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 6.5e-140 501.1 265 94.3
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 6.5e-140 501.1 265 94.3
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 2.7e-138 495.7 338 78.1
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 1.8e-137 493.0 271 88.6
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 4.0e-137 491.9 338 77.5
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 2.4e-134 482.6 316 73.1
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 2.3e-121 439.5 344 66.6
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 2.2e-119 433.0 238 87.8
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 3.9e-116 422.2 251 80.9
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 3.4e-112 409.1 251 80.5
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 5.8e-112 408.3 311 61.7
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 1.1e-110 404.1 216 91.7
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 3.0e-108 396.0 248 77.4
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 2.2e-103 379.8 330 59.1
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 2.1e-101 373.2 315 56.5
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 1.4e-54 217.6 128 82.8
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 3.3e-43 179.9 167 61.1
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 6.3e-34 149.1 180 52.8
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 5.5e-30 136.0 79 82.3
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 3.6e-29 133.3 80 81.2
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 3.3e-27 126.7 73 84.9
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 3.5e-24 116.7 74 75.7
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.6e-21 107.8 104 60.6
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 2.7e-16 90.5 51 84.3
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 1.2e-13 81.6 99 48.5
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 8.9e-12 75.5 57 70.2
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 1.2e-11 75.1 42 81.0
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 2.4e-09 67.4 60 60.0
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 2.4e-09 67.4 60 60.0
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 3.1e-09 67.0 100 41.0
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 7.3e-06 55.8 34 76.5
Medtr5g030880 Medicago truncatula HOM05D000871 ORTHO05D036729 7.3e-06 55.8 57 56.1


User provided reference genes

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