Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 4.5e-305 1050.4 524 100.0
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 7.4e-300 1033.1 524 98.3
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 6.1e-286 986.9 506 97.0
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 2.8e-230 802.0 544 75.9
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 7.1e-226 787.3 545 74.7
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 5.6e-223 777.7 542 74.4
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 8.9e-221 770.4 538 73.8
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.9e-219 765.4 537 73.2
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 3.7e-198 695.3 543 68.3
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 2.7e-193 679.1 548 65.0
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 4.8e-190 668.3 548 64.4
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 3.4e-188 662.1 500 68.4
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 3.4e-188 662.1 548 64.1
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 1.0e-187 660.6 545 63.3
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 7.2e-186 654.4 534 65.0
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 6.1e-185 651.4 537 63.7
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 6.7e-184 647.9 551 63.5
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 3.3e-183 645.6 547 63.6
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 3.3e-183 645.6 501 68.1
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 3.2e-178 629.0 550 62.9
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 7.2e-178 627.9 529 63.3
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 8.8e-176 620.9 546 61.2
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 2.0e-175 619.8 514 64.2
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 4.4e-175 618.6 608 57.2
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 2.8e-174 615.9 475 66.3
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 6.9e-173 611.3 550 60.4
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 1.2e-172 610.5 518 63.3
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 1.5e-172 610.1 465 67.1
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 3.4e-172 609.0 465 67.1
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 1.0e-171 607.4 465 66.7
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 3.8e-171 605.5 481 64.9
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 5.0e-171 605.1 465 66.5
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 7.2e-170 601.3 498 63.3
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 1.6e-169 600.1 539 57.3
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.6e-169 600.1 474 65.0
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 6.1e-169 598.2 446 67.9
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 1.0e-168 597.4 461 66.6
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 1.4e-168 597.0 507 63.7
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 1.8e-168 596.7 542 59.0
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 5.2e-168 595.1 567 58.4
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 2.0e-167 593.2 547 59.6
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 5.7e-167 591.7 539 59.7
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 7.4e-167 591.3 540 59.6
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 1.7e-166 590.1 466 65.9
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 2.2e-166 589.7 549 59.2
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 2.8e-166 589.3 533 60.4
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 4.8e-166 588.6 439 68.1
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 3.1e-165 585.9 549 57.7
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 1.2e-164 583.9 521 61.0
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 2.6e-164 582.8 549 57.4
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 3.5e-164 582.4 524 60.5
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 3.5e-164 582.4 522 59.8
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 7.7e-164 581.3 462 62.1
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 1.0e-163 580.9 546 58.2
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 1.3e-163 580.5 515 61.0
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 1.7e-163 580.1 530 59.6
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 6.5e-163 578.2 531 59.3
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 1.1e-162 577.4 528 59.7
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 3.2e-162 575.9 550 56.9
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 1.6e-161 573.5 532 60.5
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 6.1e-161 571.6 442 66.1
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 6.1e-161 571.6 512 61.3
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 5.2e-160 568.5 540 56.7
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 2.6e-159 566.2 512 60.7
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 3.3e-159 565.8 467 61.0
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 1.7e-158 563.5 519 58.8
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.7e-158 563.5 524 60.1
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 1.7e-158 563.5 467 61.2
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.2e-158 563.1 524 60.1
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 2.8e-158 562.8 519 58.8
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 2.8e-158 562.8 519 58.8
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.8e-158 562.0 530 59.4
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 6.3e-158 561.6 519 58.8
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 6.3e-158 561.6 519 58.8
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 6.3e-158 561.6 528 60.0
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 8.2e-158 561.2 542 58.9
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.4e-157 560.5 524 59.9
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.8e-157 560.1 528 60.0
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 5.3e-157 558.5 483 60.2
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 1.3e-155 553.9 429 64.1
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 5.0e-155 552.0 546 55.9
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 7.2e-154 548.1 532 56.0
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 1.2e-153 547.4 522 56.5
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 2.1e-153 546.6 469 61.0
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 4.7e-153 545.4 510 58.0
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 1.4e-152 543.9 528 56.8
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 3.4e-151 539.3 536 56.3
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 6.3e-150 535.0 543 55.6
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 1.4e-149 533.9 554 55.8
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 7.0e-149 531.6 550 54.0
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 7.0e-149 531.6 422 62.8
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 2.3e-147 526.6 464 61.0
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 7.5e-143 511.5 413 62.0
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 1.7e-142 510.4 479 56.8
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 4.1e-141 505.8 674 45.8
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 1.9e-138 496.9 553 52.3
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 6.1e-137 491.9 547 53.7
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 2.6e-135 486.5 548 50.7
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 4.6e-132 475.7 493 54.2
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 1.7e-131 473.8 304 78.3
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 2.3e-131 473.4 510 51.4
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 6.2e-129 465.3 378 65.6
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 4.0e-128 462.6 411 59.1
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 2.6e-127 459.9 516 50.8
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 5.8e-127 458.8 464 55.6
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 3.7e-126 456.1 362 66.6
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 6.4e-126 455.3 505 50.5
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 3.6e-105 386.3 421 51.5
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 1.1e-104 384.8 540 44.8
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 3.0e-99 366.7 312 61.2
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 2.4e-96 357.1 480 47.3
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.3e-91 341.3 377 49.1
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 5.8e-87 325.9 259 64.5
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 2.7e-84 317.0 287 53.3
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.8e-70 270.0 239 61.1
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 6.5e-62 242.7 346 39.6
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 1.9e-61 241.1 324 41.7
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 1.0e-59 235.3 285 47.4
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 4.4e-50 203.4 330 36.1
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 2.0e-39 167.9 244 43.9
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 1.4e-32 145.2 237 42.6
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 1.4e-32 145.2 154 50.0
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 5.4e-32 143.3 195 37.4
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 9.1e-32 142.5 95 68.4
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 4.9e-25 120.2 80 71.2
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 1.2e-23 115.5 62 83.9
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 5.9e-23 113.2 176 38.6
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 2.4e-16 91.3 83 54.2
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 3.5e-15 87.4 148 43.2
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 1.6e-07 62.0 49 71.4


User provided reference genes

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