Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G198700 Gossypium raimondii HOM05D000889 ORTHO05D000693 9.9e-49 196.4 97 100.0
Gohir.D09G176600 Gossypium hirsutum HOM05D000889 ORTHO05D000693 4.1e-47 191.0 97 97.9
Gohir.D09G176700 Gossypium hirsutum HOM05D000889 ORTHO05D000693 7.1e-47 190.3 97 95.9
Gohir.A09G181900 Gossypium hirsutum HOM05D000889 ORTHO05D000693 1.6e-46 189.1 97 95.9
Gohir.D09G176900 Gossypium hirsutum HOM05D000889 ORTHO05D000693 1.6e-46 189.1 97 94.8
Gohir.D09G176800 Gossypium hirsutum HOM05D000889 ORTHO05D000693 2.1e-46 188.7 97 94.8
Gohir.A09G182300 Gossypium hirsutum HOM05D000889 ORTHO05D000693 4.6e-46 187.6 97 94.8
Gohir.A09G182100 Gossypium hirsutum HOM05D000889 ORTHO05D000693 1.0e-45 186.4 97 93.8
Gohir.A09G182000 Gossypium hirsutum HOM05D000889 ORTHO05D000693 1.3e-45 186.0 97 92.8
Gorai.006G198800 Gossypium raimondii HOM05D000889 ORTHO05D000693 2.3e-45 185.3 97 92.8
Gohir.A09G182200 Gossypium hirsutum HOM05D000889 ORTHO05D000693 1.1e-44 183.0 98 92.9
Gorai.006G198900 Gossypium raimondii HOM05D005573 ORTHO05D007161 1.1e-26 123.2 76 78.9
Gohir.A03G181600 Gossypium hirsutum HOM05D000889 ORTHO05D000693 3.8e-16 88.2 99 46.5
Gorai.005G230400 Gossypium raimondii HOM05D000889 ORTHO05D000693 6.5e-16 87.4 99 45.5
Gohir.D02G203300 Gossypium hirsutum HOM05D000889 ORTHO05D000693 8.4e-16 87.0 99 45.5
Duzib138G0094 Durio zibethinus HOM05D000889 ORTHO05D000693 3.9e-13 78.2 94 44.7
Gohir.A12G054800 Gossypium hirsutum HOM05D000889 ORTHO05D000693 6.7e-13 77.4 93 44.1
Duzib138G1452 Durio zibethinus HOM05D000889 ORTHO05D000693 1.1e-12 76.6 94 43.6
Duzib133G1374 Durio zibethinus HOM05D000889 ORTHO05D000693 1.9e-12 75.9 94 44.7
Gohir.A07G174300 Gossypium hirsutum HOM05D000889 ORTHO05D000693 1.3e-11 73.2 94 45.7
Gorai.008G057100 Gossypium raimondii HOM05D000889 ORTHO05D000693 1.6e-11 72.8 93 41.9
Gohir.D12G054200 Gossypium hirsutum HOM05D000889 ORTHO05D000693 2.2e-11 72.4 93 41.9
Gohir.D12G054000 Gossypium hirsutum HOM05D000889 ORTHO05D000693 2.8e-11 72.0 93 39.8
Thecc.04G129100 Theobroma cacao HOM05D000889 ORTHO05D000693 3.7e-11 71.6 94 43.6
Gohir.D12G054100 Gossypium hirsutum HOM05D000889 ORTHO05D000693 4.8e-11 71.2 93 39.8
Gohir.D12G053800 Gossypium hirsutum HOM05D000889 ORTHO05D000693 6.3e-11 70.9 93 38.7
Gohir.D12G053900 Gossypium hirsutum HOM05D000889 ORTHO05D000693 6.3e-11 70.9 93 38.7
Duzib138G0405 Durio zibethinus HOM05D000889 ORTHO05D000693 8.2e-11 70.5 94 42.6
Gohir.D07G181600 Gossypium hirsutum HOM05D000889 ORTHO05D000693 1.1e-10 70.1 94 42.6
Gorai.001G202600 Gossypium raimondii HOM05D000889 ORTHO05D000693 1.4e-10 69.7 94 42.6
Gohir.A03G181700 Gossypium hirsutum HOM05D000889 ORTHO05D000693 3.1e-10 68.6 98 43.9
Gohir.A12G054700 Gossypium hirsutum HOM05D000889 ORTHO05D000693 9.0e-10 67.0 93 38.7
COL.COLO4_09369 Corchorus olitorius HOM05D000889 ORTHO05D000693 1.2e-09 66.6 94 39.4
Gorai.005G230500 Gossypium raimondii HOM05D000889 ORTHO05D000693 1.2e-09 66.6 97 43.3
Rhsim10G0071300 Rhododendron simsii HOM05D000889 ORTHO05D000693 3.4e-09 65.1 91 39.6
Rhsim10G0071200 Rhododendron simsii HOM05D000889 ORTHO05D000693 4.5e-09 64.7 91 39.6
Migut.L00497 Erythranthe guttata HOM05D000889 ORTHO05D000693 5.9e-09 64.3 91 40.7
Duzib138G0453 Durio zibethinus HOM05D000889 ORTHO05D000693 7.6e-09 63.9 113 37.2
Oeu039738.1 Olea europaea HOM05D000889 ORTHO05D000693 7.6e-09 63.9 92 39.1
QL02p049732 Quercus lobata HOM05D000889 ORTHO05D000693 1.7e-08 62.8 95 34.7
QL02p050473 Quercus lobata HOM05D000889 ORTHO05D000693 1.7e-08 62.8 95 34.7
CANSAT78G1714 Cannabis sativa HOM05D000889 ORTHO05D000693 3.8e-08 61.6 94 38.3
CiPaw.15G134900 Carya illinoinensis HOM05D000889 ORTHO05D000693 3.8e-08 61.6 93 36.6
CiPaw.16G088700 Carya illinoinensis HOM05D000889 ORTHO05D000693 3.8e-08 61.6 85 37.6
MD17G1248900 Malus domestica HOM05D000889 ORTHO05D000693 3.8e-08 61.6 89 40.4
QL02p050390 Quercus lobata HOM05D000889 ORTHO05D000693 3.8e-08 61.6 95 33.7
QL04p011999 Quercus lobata HOM05D000889 ORTHO05D000693 3.8e-08 61.6 95 33.7
Rhsim10G0072300 Rhododendron simsii HOM05D000889 ORTHO05D000693 3.8e-08 61.6 93 38.7
Atru.chr9.899 Acer truncatum HOM05D000889 ORTHO05D000693 5.0e-08 61.2 85 40.0
CSS0041793 Camellia sinensis var. sinensis HOM05D000889 ORTHO05D000693 5.0e-08 61.2 94 36.2
Potri.004G096000 Populus trichocarpa HOM05D000889 ORTHO05D000693 5.0e-08 61.2 95 41.1
Migut.L00498 Erythranthe guttata HOM05D000889 ORTHO05D000693 6.5e-08 60.8 82 39.0
Manes.01G112500 Manihot esculenta HOM05D000889 ORTHO05D000693 6.5e-08 60.8 97 38.1
Nitab4.5_0001194g0100 Nicotiana tabacum HOM05D000889 ORTHO05D000693 6.5e-08 60.8 93 38.7
Sabra04G0065200 Salix brachista HOM05D000889 ORTHO05D000693 8.5e-08 60.5 81 42.0
Sed0012370 Sechium edule HOM05D000889 ORTHO05D000693 8.5e-08 60.5 93 34.4
Nitab4.5_0003908g0010 Nicotiana tabacum HOM05D000889 ORTHO05D000693 1.1e-07 60.1 93 37.6
Gohir.D02G203400 Gossypium hirsutum HOM05D000889 ORTHO05D000693 1.4e-07 59.7 95 38.9
CSS0032685 Camellia sinensis var. sinensis HOM05D000889 ORTHO05D000693 1.9e-07 59.3 94 37.2
Prupe.3G147900 Prunus persica HOM05D000889 ORTHO05D000693 1.9e-07 59.3 85 36.5
CSS0004186 Camellia sinensis var. sinensis HOM05D000889 ORTHO05D000693 2.5e-07 58.9 98 34.7
Lsat_1_v5_gn_8_142961 Lactuca sativa HOM05D000889 ORTHO05D000693 2.5e-07 58.9 91 35.2
QL10p026454 Quercus lobata HOM05D000889 ORTHO05D000693 2.5e-07 58.9 93 35.5
Eucgr.B02852 Eucalyptus grandis HOM05D000889 ORTHO05D000693 3.2e-07 58.5 91 39.6
CSS0029888 Camellia sinensis var. sinensis HOM05D000889 ORTHO05D000693 4.2e-07 58.2 95 35.8
Manes.01G112700 Manihot esculenta HOM05D000889 ORTHO05D000693 4.2e-07 58.2 94 37.2
Phvul.004G154200 Phaseolus vulgaris HOM05D000889 ORTHO05D000693 4.2e-07 58.2 87 39.1
Prupe.1G316400 Prunus persica HOM05D000889 ORTHO05D000693 4.2e-07 58.2 80 36.2
MSTRG.3543 Avicennia marina HOM05D000889 ORTHO05D000693 5.5e-07 57.8 84 40.5
CiPaw.03G064600 Carya illinoinensis HOM05D000889 ORTHO05D000693 5.5e-07 57.8 91 40.7
Migut.L00496 Erythranthe guttata HOM05D000889 ORTHO05D000693 5.5e-07 57.8 93 35.5
Glyma.07G096700 Glycine max HOM05D000889 ORTHO05D000693 5.5e-07 57.8 85 34.1
Manes.01G112600 Manihot esculenta HOM05D000889 ORTHO05D000693 5.5e-07 57.8 94 37.2
Manes.14G106600 Manihot esculenta HOM05D000889 ORTHO05D000693 5.5e-07 57.8 83 38.6
Medtr7g007440 Medicago truncatula HOM05D000889 ORTHO05D000693 5.5e-07 57.8 98 33.7
Rhsim10G0072100 Rhododendron simsii HOM05D000889 ORTHO05D000693 5.5e-07 57.8 86 37.2
Rhsim10G0072200 Rhododendron simsii HOM05D000889 ORTHO05D000693 5.5e-07 57.8 86 37.2
TPR.G19304 Trifolium pratense HOM05D000889 ORTHO05D000693 5.5e-07 57.8 85 36.5
HanXRQChr14g0450831 Helianthus annuus HOM05D000889 ORTHO05D000693 7.2e-07 57.4 91 34.1
Manes.05G132600 Manihot esculenta HOM05D000889 ORTHO05D000693 7.2e-07 57.4 89 34.8
Potri.017G118700 Populus trichocarpa HOM05D000889 ORTHO05D000693 7.2e-07 57.4 95 37.9
Prupe.3G147800 Prunus persica HOM05D000889 ORTHO05D000693 7.2e-07 57.4 88 34.1
Sed0012778 Sechium edule HOM05D000889 ORTHO05D000693 7.2e-07 57.4 96 41.7
TPR.G25251 Trifolium pratense HOM05D000889 ORTHO05D000693 7.2e-07 57.4 84 32.1
COL.COLO4_09367 Corchorus olitorius HOM05D000889 ORTHO05D000693 9.3e-07 57.0 94 36.2
CsaV3_5G010030 Cucumis sativus L. HOM05D000889 ORTHO05D000693 9.3e-07 57.0 94 36.2
Gohir.D09G050500 Gossypium hirsutum HOM05D000889 ORTHO05D000693 9.3e-07 57.0 89 37.1
Lalb_Chr10g0091431 Lupinus albus HOM05D000889 ORTHO05D000693 9.3e-07 57.0 98 37.8
RhsimUnG0246000 Rhododendron simsii HOM05D000889 ORTHO05D000693 9.3e-07 57.0 91 34.1
Thecc.03G040600 Theobroma cacao HOM05D000889 ORTHO05D000693 9.3e-07 57.0 89 37.1
GSVIVG01030985001 Vitis vinifera HOM05D000889 ORTHO05D000693 9.3e-07 57.0 85 38.8
Cfa007895 Carpinus fangiana HOM05D000889 ORTHO05D000693 1.2e-06 56.6 94 40.4
MELO3C010391.2 Cucumis melo HOM05D000889 ORTHO05D000693 1.2e-06 56.6 96 39.6
Phvul.004G002600 Phaseolus vulgaris HOM05D000889 ORTHO05D000693 1.2e-06 56.6 90 36.7
QL01p010843 Quercus lobata HOM05D000889 ORTHO05D000693 1.2e-06 56.6 91 35.2
Rhsim10G0070700 Rhododendron simsii HOM05D000889 ORTHO05D000693 1.2e-06 56.6 91 34.1
CiPaw.03G064500 Carya illinoinensis HOM05D000889 ORTHO05D000693 1.6e-06 56.2 98 32.7
ClCG04G010940 Citrullus lanatus HOM05D000889 ORTHO05D000693 1.6e-06 56.2 83 36.1
Cc11_g09700 Coffea canephora HOM05D000889 ORTHO05D000693 1.6e-06 56.2 85 35.3
MD13G1035400 Malus domestica HOM05D000889 ORTHO05D000693 1.6e-06 56.2 98 34.7
Rhsim10G0072400 Rhododendron simsii HOM05D000889 ORTHO05D000693 1.6e-06 56.2 88 34.1
TPR.G16555 Trifolium pratense HOM05D000889 ORTHO05D000693 1.6e-06 56.2 84 39.3
Migut.L01027 Erythranthe guttata HOM05D000889 ORTHO05D000693 2.1e-06 55.8 87 34.5
Phvul.004G002700 Phaseolus vulgaris HOM05D000889 ORTHO05D000693 2.1e-06 55.8 90 34.4
RcHm_v2.0_Chr7g0179461 Rosa chinensis HOM05D000889 ORTHO05D000693 2.1e-06 55.8 89 32.6
CANSAT80G1394 Cannabis sativa HOM05D000889 ORTHO05D000693 2.7e-06 55.5 93 34.4
Haze_00650 Corylus avellana HOM05D000889 ORTHO05D000693 2.7e-06 55.5 94 37.2
Glyma.09G181100 Glycine max HOM05D000889 ORTHO05D000693 2.7e-06 55.5 81 34.6
Glyma.18G294200 Glycine max HOM05D000889 ORTHO05D000693 2.7e-06 55.5 98 37.8
Gohir.A09G049400 Gossypium hirsutum HOM05D000889 ORTHO05D000693 2.7e-06 55.5 89 34.8
Lalb_Chr00c03g0404221 Lupinus albus HOM05D000889 ORTHO05D000693 2.7e-06 55.5 98 37.8
Lalb_Chr00c03g0404271 Lupinus albus HOM05D000889 ORTHO05D000693 2.7e-06 55.5 98 37.8
Sed0010035 Sechium edule HOM05D000889 ORTHO05D000693 2.7e-06 55.5 79 38.0
AUR62037636 Chenopodium quinoa HOM05D000889 ORTHO05D000693 3.6e-06 55.1 90 37.8
CsaV3_4G010450 Cucumis sativus L. HOM05D000889 ORTHO05D000693 3.6e-06 55.1 87 35.6
HanXRQChr17g0552001 Helianthus annuus HOM05D000889 ORTHO05D000693 3.6e-06 55.1 92 38.0
PGR042G2741 Punica granatum HOM05D000889 ORTHO05D000693 3.6e-06 55.1 89 36.0
CSS0020161 Camellia sinensis var. sinensis HOM05D000889 ORTHO05D000693 4.6e-06 54.7 91 30.8
CSS0047424 Camellia sinensis var. sinensis HOM05D000889 ORTHO05D000693 4.6e-06 54.7 91 30.8
Cfa007896 Carpinus fangiana HOM05D000889 ORTHO05D000693 4.6e-06 54.7 93 32.3
Gorai.006G059100 Gossypium raimondii HOM05D000889 ORTHO05D000693 4.6e-06 54.7 89 36.0
Hma1.2p1_0500F.1_g167240 Hydrangea macrophylla HOM05D000889 ORTHO05D000693 4.6e-06 54.7 97 32.0
Hma1.2p1_1109F.1_g258245 Hydrangea macrophylla HOM05D000889 ORTHO05D000693 4.6e-06 54.7 97 32.0
Lj1g0016049 Lotus japonicus HOM05D000889 ORTHO05D000693 4.6e-06 54.7 89 32.6
MD14G1229500 Malus domestica HOM05D000889 ORTHO05D000693 4.6e-06 54.7 89 32.6
Manes.02G070900 Manihot esculenta HOM05D000889 ORTHO05D000693 4.6e-06 54.7 98 35.7
Medtr1g109650 Medicago truncatula HOM05D000889 ORTHO05D000693 4.6e-06 54.7 88 35.2
TPR.G39930 Trifolium pratense HOM05D000889 ORTHO05D000693 4.6e-06 54.7 88 34.1
CiPaw.05G241500 Carya illinoinensis HOM05D000889 ORTHO05D000693 6.1e-06 54.3 91 30.8
Ciclev10023053m.g Citrus clementina HOM05D000889 ORTHO05D000693 6.1e-06 54.3 86 31.4
Haze_16383 Corylus avellana HOM05D000889 ORTHO05D000693 6.1e-06 54.3 92 34.8
Sabra12G0038100 Salix brachista HOM05D000889 ORTHO05D000693 6.1e-06 54.3 89 34.8
Cfa015840 Carpinus fangiana HOM05D000889 ORTHO05D000693 7.9e-06 53.9 94 36.2
AUR62044232 Chenopodium quinoa HOM05D000889 ORTHO05D000693 7.9e-06 53.9 90 37.8
Ca_25473_v3 Cicer arietinum L. HOM05D000889 ORTHO05D000693 7.9e-06 53.9 85 32.9
Ca_29865_v3 Cicer arietinum L. HOM05D000889 ORTHO05D000693 7.9e-06 53.9 85 32.9
CsaV3_4G010440 Cucumis sativus L. HOM05D000889 ORTHO05D000693 7.9e-06 53.9 85 35.3
Gohir.D12G267700 Gossypium hirsutum HOM05D000889 ORTHO05D000693 7.9e-06 53.9 94 35.1
Gorai.008G287700 Gossypium raimondii HOM05D000889 ORTHO05D000693 7.9e-06 53.9 94 35.1
Lalb_Chr06g0176721 Lupinus albus HOM05D000889 ORTHO05D000693 7.9e-06 53.9 67 40.3
Rhsim10G0070900 Rhododendron simsii HOM05D000889 ORTHO05D000693 7.9e-06 53.9 91 36.3
Rhsim10G0071100 Rhododendron simsii HOM05D000889 ORTHO05D000693 7.9e-06 53.9 93 33.3
RhsimUnG0245900 Rhododendron simsii HOM05D000889 ORTHO05D000693 7.9e-06 53.9 91 36.3
TAR371G0380 Trochodendron aralioides HOM05D000889 ORTHO05D000693 7.9e-06 53.9 91 38.5


User provided reference genes

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