Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G192100 Gossypium raimondii HOM05D004897 ORTHO05D005928 1.5e-87 326.2 172 100.0
Gohir.D09G170550 Gossypium hirsutum HOM05D004897 ORTHO05D005928 4.0e-85 318.2 172 97.7
Gohir.A09G175700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 5.6e-79 297.7 173 93.1
Duzib084G0246 Durio zibethinus HOM05D004897 ORTHO05D005928 6.4e-67 257.7 168 82.1
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 5.1e-64 248.1 168 78.0
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 5.1e-64 248.1 168 78.0
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 5.1e-64 248.1 168 78.0
Thecc.03G053700 Theobroma cacao HOM05D004897 ORTHO05D005928 8.6e-64 247.3 167 79.6
COL.COLO4_16135 Corchorus olitorius HOM05D004897 ORTHO05D005928 1.9e-63 246.1 168 77.4
Atru.chr9.1748 Acer truncatum HOM05D004897 ORTHO05D005928 7.8e-57 224.2 168 70.2
Manes.14G170400 Manihot esculenta HOM05D004897 ORTHO05D005928 6.6e-56 221.1 168 70.2
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 8.7e-56 220.7 168 68.5
CiPaw.15G140900 Carya illinoinensis HOM05D004897 ORTHO05D005928 1.5e-55 219.9 168 70.2
Sabra15G0057300 Salix brachista HOM05D004897 ORTHO05D005928 1.9e-55 219.5 171 68.4
TWI81G0456 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 5.6e-55 218.0 168 69.0
Cfa019677 Carpinus fangiana HOM05D004897 ORTHO05D005928 9.6e-55 217.2 168 67.9
Hma1.2p1_0669F.1_g200180 Hydrangea macrophylla HOM05D004897 ORTHO05D005928 9.6e-55 217.2 168 66.1
Potri.015G039800 Populus trichocarpa HOM05D004897 ORTHO05D005928 9.6e-55 217.2 168 68.5
Medtr8g107060 Medicago truncatula HOM05D004897 ORTHO05D005928 3.6e-54 215.3 173 67.1
CSS0030961 Camellia sinensis var. sinensis HOM05D004897 ORTHO05D005928 1.1e-53 213.8 168 65.5
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 1.1e-53 213.8 173 65.9
Actinidia18901 Actinidia chinensis HOM05D004897 ORTHO05D005928 1.4e-53 213.4 168 65.5
arahy.Tifrunner.gnm1.ann1.QTT902 Arachis hypogaea HOM05D004897 ORTHO05D005928 1.4e-53 213.4 175 67.4
Haze_18817 Corylus avellana HOM05D004897 ORTHO05D005928 1.4e-53 213.4 168 66.7
Nn4g24194 Nelumbo nucifera HOM05D004897 ORTHO05D005928 2.4e-53 212.6 174 64.4
arahy.Tifrunner.gnm1.ann1.Y8NJDB Arachis hypogaea HOM05D004897 ORTHO05D005928 3.1e-53 212.2 175 66.9
Glyma.05G244800 Glycine max HOM05D004897 ORTHO05D005928 3.1e-53 212.2 173 65.9
Rhsim12G0138900 Rhododendron simsii HOM05D004897 ORTHO05D005928 6.9e-53 211.1 168 64.9
BcaC05g25714 Brassica carinata HOM05D004897 ORTHO05D005928 9.0e-53 210.7 173 64.7
C05p16500 Brassica napus HOM05D004897 ORTHO05D005928 9.0e-53 210.7 173 64.7
BolC5t30347H Brassica oleracea HOM05D004897 ORTHO05D005928 9.0e-53 210.7 173 64.7
AL1G30560 Arabidopsis lyrata HOM05D004897 ORTHO05D005928 1.2e-52 210.3 173 63.6
AT1G18190 Arabidopsis thaliana HOM05D004897 ORTHO05D005928 1.2e-52 210.3 173 63.6
A06p14220 Brassica napus HOM05D004897 ORTHO05D005928 1.2e-52 210.3 173 64.2
BraA06t24553Z Brassica rapa HOM05D004897 ORTHO05D005928 1.2e-52 210.3 173 64.2
Carub.0001s1783 Capsella rubella HOM05D004897 ORTHO05D005928 1.5e-52 209.9 173 63.6
BcaB07g31825 Brassica carinata HOM05D004897 ORTHO05D005928 2.6e-52 209.1 173 64.7
Ca_17200_v3 Cicer arietinum L. HOM05D004897 ORTHO05D005928 2.6e-52 209.1 173 64.2
QL10p028331 Quercus lobata HOM05D004897 ORTHO05D005928 2.6e-52 209.1 170 65.3
VMungo0251G1788 Vigna mungo HOM05D004897 ORTHO05D005928 2.6e-52 209.1 173 65.9
Sp1g16170 Schrenkiella parvula HOM05D004897 ORTHO05D005928 4.5e-52 208.4 173 63.6
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 5.8e-52 208.0 173 65.3
PGR083G0946 Punica granatum HOM05D004897 ORTHO05D005928 5.8e-52 208.0 172 66.9
QL10p028216 Quercus lobata HOM05D004897 ORTHO05D005928 5.8e-52 208.0 170 64.7
Lalb_Chr05g0221751 Lupinus albus HOM05D004897 ORTHO05D005928 9.9e-52 207.2 173 65.3
Psat7g002120 Pisum sativum HOM05D004897 ORTHO05D005928 9.9e-52 207.2 170 63.5
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 1.3e-51 206.8 174 63.2
Phvul.002G329100 Phaseolus vulgaris HOM05D004897 ORTHO05D005928 1.3e-51 206.8 173 64.2
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 2.2e-51 206.1 169 65.7
BraA08t34983Z Brassica rapa HOM05D004897 ORTHO05D005928 8.4e-51 204.1 170 63.5
Lj9C421G3 Lonicera japonica HOM05D004897 ORTHO05D005928 2.4e-50 202.6 168 63.1
TWI60G0918 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 2.4e-50 202.6 168 63.7
vmacro16414 Vaccinium macrocarpon HOM05D004897 ORTHO05D005928 2.4e-50 202.6 167 64.1
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 3.2e-50 202.2 173 61.8
Aa31LG7G2880 Aethionema arabicum HOM05D004897 ORTHO05D005928 4.2e-50 201.8 172 61.0
MELO3C017351.2 Cucumis melo HOM05D004897 ORTHO05D005928 4.2e-50 201.8 167 65.9
CARHR018760 Cardamine hirsuta HOM05D004897 ORTHO05D005928 7.1e-50 201.1 175 60.6
Thhalv10007004m.g Eutrema salsugineum HOM05D004897 ORTHO05D005928 7.1e-50 201.1 174 62.6
CsaV3_1G004270 Cucumis sativus L. HOM05D004897 ORTHO05D005928 9.3e-50 200.7 167 65.9
FAN04G2242 Fragaria x ananassa HOM05D004897 ORTHO05D005928 9.3e-50 200.7 169 62.7
THA.LOC104812165 Tarenaya hassleriana HOM05D004897 ORTHO05D005928 1.2e-49 200.3 172 61.0
ClCG06G014390 Citrullus lanatus HOM05D004897 ORTHO05D005928 1.6e-49 199.9 171 64.3
DCAR_014009 Daucus carota HOM05D004897 ORTHO05D005928 1.6e-49 199.9 173 63.0
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 1.6e-49 199.9 172 61.0
Sed0018128 Sechium edule HOM05D004897 ORTHO05D005928 1.6e-49 199.9 171 62.6
Prupe.5G232100 Prunus persica HOM05D004897 ORTHO05D005928 3.5e-49 198.7 169 62.1
TAR622G0961 Trochodendron aralioides HOM05D004897 ORTHO05D005928 7.9e-49 197.6 173 63.0
SalBow1G4576 Salvia bowleyana HOM05D004897 ORTHO05D005928 2.3e-48 196.1 169 60.9
FAN13G1819 Fragaria x ananassa HOM05D004897 ORTHO05D005928 3.0e-48 195.7 169 60.9
Peaxi162Scf00683g00441 Petunia axillaris HOM05D004897 ORTHO05D005928 3.0e-48 195.7 172 62.8
GSVIVG01008417001 Vitis vinifera HOM05D004897 ORTHO05D005928 3.0e-48 195.7 168 64.9
C08p18450 Brassica napus HOM05D004897 ORTHO05D005928 5.1e-48 194.9 172 61.0
BolC8t49476H Brassica oleracea HOM05D004897 ORTHO05D005928 5.1e-48 194.9 172 61.0
FAN08G3076 Fragaria x ananassa HOM05D004897 ORTHO05D005928 6.7e-48 194.5 169 60.9
FAN18G0124 Fragaria x ananassa HOM05D004897 ORTHO05D005928 1.1e-47 193.7 169 60.4
ECA233G2541 Erigeron canadensis HOM05D004897 ORTHO05D005928 1.9e-47 193.0 167 62.9
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 1.9e-47 193.0 169 62.1
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 2.5e-47 192.6 169 62.1
Cc04_g06380 Coffea canephora HOM05D004897 ORTHO05D005928 4.3e-47 191.8 174 61.5
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 4.3e-47 191.8 173 58.4
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 5.6e-47 191.4 173 60.7
BcaC07g38902 Brassica carinata HOM05D004897 ORTHO05D005928 7.4e-47 191.0 172 60.5
Hund02326 Selenicereus undatus HOM05D004897 ORTHO05D005928 1.6e-46 189.9 172 59.3
Actinidia35124 Actinidia chinensis HOM05D004897 ORTHO05D005928 4.8e-46 188.3 168 61.3
Sed0002019 Sechium edule HOM05D004897 ORTHO05D005928 6.2e-46 188.0 171 60.2
MSTRG.4571 Avicennia marina HOM05D004897 ORTHO05D005928 1.1e-45 187.2 173 56.6
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 3.1e-45 185.7 171 58.5
Migut.D01558 Erythranthe guttata HOM05D004897 ORTHO05D005928 5.3e-45 184.9 174 55.7
SGA_v2.0_scaffold168G38498 Striga asiatica HOM05D004897 ORTHO05D005928 6.9e-45 184.5 173 60.1
Dinv18253 Davidia involucrata HOM05D004897 ORTHO05D005928 9.0e-45 184.1 207 52.7
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 1.5e-44 183.3 171 60.8
AUR62042935 Chenopodium quinoa HOM05D004897 ORTHO05D005928 2.6e-44 182.6 170 57.1
Aqoxy3G00106 Aquilegia oxysepala HOM05D004897 ORTHO05D005928 9.9e-44 180.6 171 59.1
Nitab4.5_0001456g0120 Nicotiana tabacum HOM05D004897 ORTHO05D005928 1.7e-43 179.9 195 55.4
BcaNung05436 Brassica carinata HOM05D004897 ORTHO05D005928 3.8e-43 178.7 152 61.2
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 3.8e-43 178.7 171 59.1
Nitab4.5_0006894g0040 Nicotiana tabacum HOM05D004897 ORTHO05D005928 1.9e-42 176.4 200 54.5
PSO017G1741 Papaver somniferum HOM05D004897 ORTHO05D005928 1.9e-42 176.4 174 59.2
Ah.11g045250 Amaranthus hybridus HOM05D004897 ORTHO05D005928 4.2e-42 175.3 171 55.6
PSO478G0546 Papaver somniferum HOM05D004897 ORTHO05D005928 1.2e-41 173.7 174 58.6
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 6.7e-40 167.9 168 56.0
Os04g0652500 Oryza sativa ssp. japonica HOM05D004897 ORTHO05D005928 1.5e-39 166.8 170 55.9
BcaB03g12969 Brassica carinata HOM05D004897 ORTHO05D005928 2.1e-38 162.9 168 54.8
Sc10g0009320 Simmondsia chinensis HOM05D004897 ORTHO05D005928 1.2e-36 157.1 147 63.3
HanXRQChr08g0227441 Helianthus annuus HOM05D004897 ORTHO05D005928 3.5e-33 145.6 166 53.0
HPP92_013368 Vanilla planifolia HOM05D004897 ORTHO05D005928 7.9e-33 144.4 169 48.5
ATR1102G018 Amborella trichopoda HOM05D004897 ORTHO05D005928 1.8e-32 143.3 182 49.5
TPR.G1406 Trifolium pratense HOM05D004897 ORTHO05D005928 7.4e-31 137.9 128 60.9
SEGI_33031 Sequoiadendron giganteum HOM05D004897 ORTHO05D005928 5.0e-27 125.2 182 43.4
Zm00001eb068130 Zea mays HOM05D004897 ORTHO05D005928 5.5e-26 121.7 137 54.0
unitig_0.g806 Utricularia gibba HOM05D004897 ORTHO05D005928 1.8e-21 106.7 151 42.4
Cpa.g.sc3.408 Carica papaya HOM05D004897 ORTHO05D005928 3.4e-20 102.4 77 72.7
AagrBONN_evm.TU.Sc2ySwM_344.4779 Anthoceros agrestis HOM05D004897 ORTHO05D005928 3.8e-19 99.0 168 39.3
Pp3c2_5550 Physcomitrium patens HOM05D004897 ORTHO05D005928 3.2e-18 95.9 176 38.1
Mapoly0056s0112 Marchantia polymorpha HOM05D004897 ORTHO05D005928 5.1e-16 88.6 164 34.8
Oeu041181.1 Olea europaea HOM05D004897 ORTHO05D005928 1.4e-13 80.5 123 43.9
Dinv10174 Davidia involucrata HOM05D004897 ORTHO05D005928 2.5e-10 69.7 44 77.3
FvH4_5g17221 Fragaria vesca HOM05D004897 ORTHO05D005928 8.0e-09 64.7 43 69.8
PGSC0003DMG403005669 Solanum tuberosum HOM05D004897 ORTHO05D005928 8.8e-08 61.2 62 53.2
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.8e-06 56.2 131 32.1
Prupe.7G033500 Prunus persica HOM05D004897 ORTHO05D005928 2.8e-06 56.2 53 62.3
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 2.8e-06 56.2 141 29.1
MBI14_g27819_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D022889 6.3e-06 55.1 65 52.3
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 6.3e-06 55.1 151 29.8


User provided reference genes

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