Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 5.7e-123 444.5 267 100.0
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 5.4e-105 384.8 241 91.3
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 4.4e-75 285.4 268 66.4
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 7.4e-62 241.5 183 87.4
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 5.0e-50 202.2 259 56.8
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 8.4e-50 201.4 256 54.3
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.4e-49 200.7 261 52.5
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.4e-49 200.7 258 53.1
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 2.4e-44 183.3 273 48.0
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 5.3e-44 182.2 273 47.6
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.6e-40 170.6 272 47.1
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 6.1e-40 168.7 268 47.4
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 5.1e-39 165.6 259 45.6
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 2.0e-38 163.7 268 43.7
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 4.1e-36 156.0 254 44.9
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 2.9e-34 149.8 254 44.9
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.1e-32 143.7 284 39.1
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 7.9e-32 141.7 267 43.4
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 7.9e-32 141.7 253 45.8
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.0e-31 141.4 263 43.0
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.3e-31 140.2 284 39.8
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 1.5e-30 137.5 260 41.2
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 4.4e-30 136.0 255 40.8
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 4.4e-30 136.0 274 42.7
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 4.4e-30 136.0 222 45.5
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 1.7e-29 134.0 274 40.1
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 8.2e-29 131.7 274 44.2
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.8e-28 130.6 255 39.6
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 1.8e-28 130.6 274 38.3
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 4.1e-28 129.4 259 40.9
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 5.3e-28 129.0 252 40.9
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 7.0e-28 128.6 277 40.4
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 1.6e-27 127.5 247 40.9
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 3.5e-27 126.3 274 39.8
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 7.7e-27 125.2 266 42.1
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 5.0e-26 122.5 267 36.7
Gorai.009G173500 Gossypium raimondii HOM05D004973 ORTHO05D006119 8.5e-26 121.7 122 78.7
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 1.5e-25 120.9 262 38.2
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 5.5e-25 119.0 246 38.6
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 5.5e-25 119.0 250 40.0
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 1.2e-24 117.9 251 37.1
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 1.2e-24 117.9 238 39.5
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.6e-24 117.5 318 34.6
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 3.6e-24 116.3 266 36.1
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 4.7e-24 115.9 272 34.6
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 5.2e-23 112.5 302 34.4
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 3.7e-21 106.3 272 41.9
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 4.8e-21 105.9 259 42.5
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 1.4e-20 104.4 269 35.7
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 1.4e-20 104.4 257 35.8
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 2.4e-20 103.6 283 34.3
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 4.1e-20 102.8 270 35.9
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.2e-19 101.3 252 34.1
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 5.9e-19 99.0 252 34.9
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 1.3e-18 97.8 225 36.9
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.3e-18 97.8 262 35.9
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.7e-18 97.4 256 35.2
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 1.7e-18 97.4 280 35.7
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 2.2e-18 97.1 252 33.3
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 5.0e-18 95.9 301 33.9
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 6.5e-18 95.5 282 34.4
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 6.5e-18 95.5 219 36.1
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 8.5e-18 95.1 101 57.4
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 8.5e-18 95.1 256 34.0
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 8.5e-18 95.1 195 39.5
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 8.5e-18 95.1 101 57.4
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.1e-17 94.7 249 36.1
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 1.1e-17 94.7 163 46.0
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 1.5e-17 94.4 283 33.9
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 1.9e-17 94.0 114 52.6
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 3.2e-17 93.2 117 53.0
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 4.2e-17 92.8 114 51.8
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 4.2e-17 92.8 264 34.1
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 4.2e-17 92.8 274 30.7
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 7.2e-17 92.0 123 52.0
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 7.2e-17 92.0 110 57.3
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 9.4e-17 91.7 317 30.9
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 1.2e-16 91.3 115 52.2
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.2e-16 91.3 108 57.4
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 2.7e-16 90.1 105 57.1
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 2.7e-16 90.1 105 57.1
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 2.7e-16 90.1 109 56.0
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 3.6e-16 89.7 93 58.1
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 3.6e-16 89.7 105 51.4
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.7e-16 89.4 221 36.2
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 4.7e-16 89.4 97 59.8
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 8.0e-16 88.6 237 35.4
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 1.0e-15 88.2 287 33.8
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 1.0e-15 88.2 277 34.7
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 1.4e-15 87.8 105 54.3
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 1.4e-15 87.8 132 46.2
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 1.4e-15 87.8 108 52.8
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 2.3e-15 87.0 105 56.2
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 2.3e-15 87.0 262 35.1
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 4.0e-15 86.3 100 56.0
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 6.8e-15 85.5 77 64.9
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 8.8e-15 85.1 76 64.5
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 1.2e-14 84.7 100 56.0
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 1.5e-14 84.3 252 34.5
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 2.0e-14 84.0 255 33.3
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 2.6e-14 83.6 127 45.7
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 3.4e-14 83.2 269 31.6
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 4.4e-14 82.8 117 47.9
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 4.4e-14 82.8 267 34.5
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 4.4e-14 82.8 105 54.3
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 5.7e-14 82.4 243 32.5
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 7.5e-14 82.0 287 32.1
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 1.3e-13 81.3 79 62.0
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 1.7e-13 80.9 97 52.6
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 2.2e-13 80.5 110 45.5
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 2.2e-13 80.5 256 34.4
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 2.8e-13 80.1 66 68.2
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 2.8e-13 80.1 66 68.2
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 2.8e-13 80.1 120 47.5
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 3.7e-13 79.7 253 28.9
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.1e-12 78.2 256 34.0
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 1.8e-12 77.4 118 44.9
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 3.1e-12 76.6 220 35.5
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 3.1e-12 76.6 323 27.6
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 5.4e-12 75.9 266 27.8
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 7.0e-12 75.5 230 33.0
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 1.2e-11 74.7 310 27.4
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 1.6e-11 74.3 64 67.2
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 1.6e-11 74.3 218 34.4
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 2.0e-11 73.9 96 54.2
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 7.7e-11 72.0 64 65.6
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 7.7e-11 72.0 106 49.1
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 1.3e-10 71.2 64 64.1
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 2.2e-10 70.5 105 49.5
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 6.5e-10 68.9 250 32.8
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 8.5e-10 68.6 67 61.2
CAN.G608.34 Capsicum annuum HOM05D004973 ORTHO05D006119 1.6e-08 64.3 217 36.4
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 2.7e-08 63.5 98 43.9
Ca_11442_v3 Cicer arietinum L. HOM05D004973 ORTHO05D006119 3.6e-08 63.2 251 31.1
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 3.6e-08 63.2 254 31.5
Ah.15g091990 Amaranthus hybridus HOM05D004973 ORTHO05D006119 1.2e-06 58.2 256 33.2
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 1.2e-06 58.2 42 69.0
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 2.6e-06 57.0 241 30.3
BcaB01g03781 Brassica carinata HOM05D004973 ORTHO05D006119 5.7e-06 55.8 45 66.7
PGSC0003DMG400002023 Solanum tuberosum HOM05D004973 ORTHO05D006119 5.7e-06 55.8 84 42.9
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 7.5e-06 55.5 62 46.8


User provided reference genes

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