Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G173000 Gossypium raimondii HOM05D005843 ORTHO05D007781 2.4e-287 991.5 511 100.0
Gohir.D09G151700 Gossypium hirsutum HOM05D005843 ORTHO05D007781 3.3e-284 981.1 511 99.0
Gohir.A09G156300 Gossypium hirsutum HOM05D005843 ORTHO05D007781 4.6e-278 960.7 511 96.9
Duzib128G1977 Durio zibethinus HOM05D005843 ORTHO05D007781 7.3e-244 847.0 529 82.4
Thecc.05G040300 Theobroma cacao HOM05D005843 ORTHO05D007781 1.1e-242 843.2 511 85.1
Atru.chr8.1969 Acer truncatum HOM05D005843 ORTHO05D007781 8.8e-205 717.2 511 70.6
GSVIVG01034179001 Vitis vinifera HOM05D005843 ORTHO05D007781 4.2e-199 698.4 511 68.1
Manes.17G047400 Manihot esculenta HOM05D005843 ORTHO05D007781 1.2e-198 696.8 511 68.1
CiPaw.09G192200 Carya illinoinensis HOM05D005843 ORTHO05D007781 7.9e-198 694.1 511 67.9
QL06p005681 Quercus lobata HOM05D005843 ORTHO05D007781 4.8e-195 684.9 510 67.3
Haze_20785 Corylus avellana HOM05D005843 ORTHO05D007781 1.1e-194 683.7 525 66.9
TAR633G1568 Trochodendron aralioides HOM05D005843 ORTHO05D007781 3.5e-193 678.7 512 67.6
Hma1.2p1_1513F.1_g288040 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 3.8e-192 675.2 511 66.7
QL11p021821 Quercus lobata HOM05D005843 ORTHO05D007781 1.1e-191 673.7 552 63.0
Cpa.g.sc332.7 Carica papaya HOM05D005843 ORTHO05D007781 1.5e-191 673.3 511 66.9
Medtr7g060680 Medicago truncatula HOM05D005843 ORTHO05D007781 2.5e-191 672.5 512 65.2
Oeu024347.1 Olea europaea HOM05D005843 ORTHO05D007781 4.0e-189 665.2 511 64.4
RcHm_v2.0_Chr3g0466751 Rosa chinensis HOM05D005843 ORTHO05D007781 1.2e-188 663.7 512 66.4
MD12G1140900 Malus domestica HOM05D005843 ORTHO05D007781 1.5e-188 663.3 511 66.3
TWI38G1602 Tripterygium wilfordii HOM05D005843 ORTHO05D007781 2.6e-188 662.5 511 65.0
Ca_26026_v3 Cicer arietinum L. HOM05D005843 ORTHO05D007781 2.8e-187 659.1 511 64.6
TPR.G23290 Trifolium pratense HOM05D005843 ORTHO05D007781 6.3e-187 657.9 511 64.0
Lj3C968G10 Lonicera japonica HOM05D005843 ORTHO05D007781 8.2e-187 657.5 549 61.7
Prupe.6G254200 Prunus persica HOM05D005843 ORTHO05D007781 1.8e-186 656.4 512 65.8
Eucgr.K03141 Eucalyptus grandis HOM05D005843 ORTHO05D007781 4.1e-186 655.2 511 63.8
FAN14G2296 Fragaria x ananassa HOM05D005843 ORTHO05D007781 3.8e-184 648.7 511 64.0
FAN05G5617 Fragaria x ananassa HOM05D005843 ORTHO05D007781 5.0e-184 648.3 511 64.0
Lalb_Chr19g0125371 Lupinus albus HOM05D005843 ORTHO05D007781 1.1e-183 647.1 511 65.4
Psat5g101400 Pisum sativum HOM05D005843 ORTHO05D007781 2.1e-182 642.9 511 63.4
CsaV3_4G024980 Cucumis sativus L. HOM05D005843 ORTHO05D007781 6.1e-182 641.3 511 62.2
CANSAT35G1785 Cannabis sativa HOM05D005843 ORTHO05D007781 1.0e-181 640.6 522 64.4
MD04G1127500 Malus domestica HOM05D005843 ORTHO05D007781 1.4e-181 640.2 511 64.4
MELO3C003129.2 Cucumis melo HOM05D005843 ORTHO05D007781 3.0e-181 639.0 511 61.8
Glyma.07G131100 Glycine max HOM05D005843 ORTHO05D007781 5.2e-181 638.3 511 64.0
Cc06_g02690 Coffea canephora HOM05D005843 ORTHO05D007781 5.7e-180 634.8 511 61.8
Hund24578 Selenicereus undatus HOM05D005843 ORTHO05D007781 1.7e-179 633.3 511 62.6
Nn8g39667 Nelumbo nucifera HOM05D005843 ORTHO05D007781 2.8e-179 632.5 511 62.4
DCAR_014847 Daucus carota HOM05D005843 ORTHO05D007781 6.3e-179 631.3 513 61.8
Rhsim05G0192300 Rhododendron simsii HOM05D005843 ORTHO05D007781 1.1e-178 630.6 513 63.5
Migut.J00332 Erythranthe guttata HOM05D005843 ORTHO05D007781 5.4e-178 628.2 511 62.0
Sc20g0004950 Simmondsia chinensis HOM05D005843 ORTHO05D007781 5.4e-178 628.2 512 62.3
VMungo1383G2898 Vigna mungo HOM05D005843 ORTHO05D007781 9.1e-178 627.5 512 62.7
Nitab4.5_0001190g0070 Nicotiana tabacum HOM05D005843 ORTHO05D007781 1.2e-177 627.1 512 61.5
Phvul.008G100900 Phaseolus vulgaris HOM05D005843 ORTHO05D007781 2.0e-177 626.3 511 63.2
PSO339G2649 Papaver somniferum HOM05D005843 ORTHO05D007781 7.7e-177 624.4 512 61.5
Sopen09g005490 Solanum pennellii HOM05D005843 ORTHO05D007781 8.5e-176 620.9 512 60.9
PGSC0003DMG400008911 Solanum tuberosum HOM05D005843 ORTHO05D007781 1.1e-175 620.5 512 61.1
A10p33250 Brassica napus HOM05D005843 ORTHO05D007781 1.5e-175 620.2 518 61.6
BolC9t60149H Brassica oleracea HOM05D005843 ORTHO05D007781 1.9e-175 619.8 514 61.5
PGR004G0455 Punica granatum HOM05D005843 ORTHO05D007781 5.5e-175 618.2 511 61.8
ECA238G1173 Erigeron canadensis HOM05D005843 ORTHO05D007781 1.6e-174 616.7 518 60.6
PSO151G0180 Papaver somniferum HOM05D005843 ORTHO05D007781 2.1e-174 616.3 512 61.3
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 3.6e-174 615.5 512 61.3
CAN.G326.14 Capsicum annuum HOM05D005843 ORTHO05D007781 1.4e-173 613.6 512 61.3
Thhalv10013300m.g Eutrema salsugineum HOM05D005843 ORTHO05D007781 2.3e-173 612.8 514 60.5
Carub.0006s0120 Capsella rubella HOM05D005843 ORTHO05D007781 3.0e-173 612.5 516 61.4
THA.LOC104809903 Tarenaya hassleriana HOM05D005843 ORTHO05D007781 4.0e-173 612.1 512 61.5
BcaNung05922 Brassica carinata HOM05D005843 ORTHO05D007781 5.2e-173 611.7 518 61.4
SalBow3G1829 Salvia bowleyana HOM05D005843 ORTHO05D007781 6.8e-173 611.3 509 59.7
CARHR211000 Cardamine hirsuta HOM05D005843 ORTHO05D007781 8.8e-173 610.9 514 61.1
ClCG04G008190 Citrullus lanatus HOM05D005843 ORTHO05D007781 1.5e-172 610.1 511 60.9
EL10Ac3g07255 Beta vulgaris HOM05D005843 ORTHO05D007781 3.4e-172 609.0 519 61.5
Aqoxy6G01388 Aquilegia oxysepala HOM05D005843 ORTHO05D007781 5.7e-172 608.2 512 60.4
arahy.Tifrunner.gnm1.ann1.JAB43P Arachis hypogaea HOM05D005843 ORTHO05D007781 1.3e-171 607.1 512 61.7
FAN02G2362 Fragaria x ananassa HOM05D005843 ORTHO05D007781 3.7e-171 605.5 542 59.4
Sp6g40070 Schrenkiella parvula HOM05D005843 ORTHO05D007781 8.3e-171 604.4 514 59.9
AT5G02410 Arabidopsis thaliana HOM05D005843 ORTHO05D007781 4.1e-170 602.1 514 59.7
Solyc09g010770.3 Solanum lycopersicum HOM05D005843 ORTHO05D007781 4.1e-170 602.1 512 59.6
Lsat_1_v5_gn_2_17401 Lactuca sativa HOM05D005843 ORTHO05D007781 5.4e-170 601.7 506 61.1
BcaC06g31988 Brassica carinata HOM05D005843 ORTHO05D007781 1.2e-169 600.5 516 60.3
A03p00670 Brassica napus HOM05D005843 ORTHO05D007781 2.0e-169 599.7 517 60.7
Peaxi162Scf00165g01322 Petunia axillaris HOM05D005843 ORTHO05D007781 2.7e-169 599.4 554 56.1
AL6G11640 Arabidopsis lyrata HOM05D005843 ORTHO05D007781 2.3e-168 596.3 498 60.6
Sed0019468 Sechium edule HOM05D005843 ORTHO05D007781 1.1e-167 594.0 483 61.3
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 1.9e-167 593.2 521 59.5
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 9.5e-167 590.9 513 59.8
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 9.5e-167 590.9 513 59.8
SGA_v2.0_scaffold75G24948 Striga asiatica HOM05D005843 ORTHO05D007781 9.5e-167 590.9 512 58.8
FAN09G3893 Fragaria x ananassa HOM05D005843 ORTHO05D007781 2.8e-166 589.3 521 59.7
Hma1.2p1_1513F.1_g288030 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 8.0e-166 587.8 464 65.5
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 6.8e-165 584.7 511 58.9
HanXRQChr16g0515781 Helianthus annuus HOM05D005843 ORTHO05D007781 3.4e-164 582.4 495 61.2
Aa31LG1G22390 Aethionema arabicum HOM05D005843 ORTHO05D007781 3.7e-163 578.9 584 54.1
Glyma.18G179500 Glycine max HOM05D005843 ORTHO05D007781 4.1e-162 575.5 514 59.9
C09p74160 Brassica napus HOM05D005843 ORTHO05D007781 1.6e-161 573.5 486 60.9
CSS0035027 Camellia sinensis var. sinensis HOM05D005843 ORTHO05D007781 5.0e-160 568.5 461 65.9
Dinv35609 Davidia involucrata HOM05D005843 ORTHO05D007781 1.1e-159 567.4 430 68.4
AUR62030297 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.8e-157 560.1 594 53.2
Actinidia26464 Actinidia chinensis HOM05D005843 ORTHO05D000250 3.1e-157 559.3 438 67.1
Sabra06G0064400 Salix brachista HOM05D005843 ORTHO05D007781 6.8e-157 558.1 533 57.8
Lj3g0024665 Lotus japonicus HOM05D005843 ORTHO05D007781 6.6e-152 541.6 452 62.6
SHI00339 Sapria himalayana HOM05D005843 ORTHO05D007781 2.8e-150 536.2 532 53.6
HPP92_000805 Vanilla planifolia HOM05D005843 ORTHO05D007781 8.1e-150 534.6 514 53.3
AUR62015928 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.5e-140 503.8 513 54.0
unitig_26.g9195 Utricularia gibba HOM05D005843 ORTHO05D007781 6.2e-134 481.9 462 56.1
Pp3c4_12410 Physcomitrium patens HOM05D005843 ORTHO05D007781 3.9e-128 462.6 520 48.7
FvH4_6g13910 Fragaria vesca HOM05D005843 ORTHO05D007781 3.6e-126 456.1 376 62.8
Os04g0503700 Oryza sativa ssp. japonica HOM05D005843 ORTHO05D007781 8.4e-123 444.9 462 50.2
arahy.Tifrunner.gnm1.ann1.HAEF8J Arachis hypogaea HOM05D005843 ORTHO05D007781 3.7e-118 429.5 387 58.9
Dinv37176 Davidia involucrata HOM05D005843 ORTHO05D007781 8.4e-115 418.3 341 63.9
SMO137G0039 Selaginella moellendorffii HOM05D005843 ORTHO05D007781 9.0e-109 398.3 530 43.2
Potri.006G084800 Populus trichocarpa HOM05D005843 ORTHO05D007781 5.3e-101 372.5 325 61.8
AUR62018365 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.0e-99 368.2 382 55.8
Mapoly0047s0019 Marchantia polymorpha HOM05D005843 ORTHO05D007781 1.4e-98 364.4 528 41.9
ATR0585G056 Amborella trichopoda HOM05D005843 ORTHO05D007781 4.8e-94 349.4 389 48.3
vmacro20152 Vaccinium macrocarpon HOM05D005843 ORTHO05D007781 5.5e-90 335.9 432 46.8
BcaC06g31987 Brassica carinata HOM05D005843 ORTHO05D007781 7.7e-84 315.5 323 53.3
CDE09G0345 Ceratophyllum demersum HOM05D005843 ORTHO05D007781 1.9e-82 310.8 460 43.7
Zm00001eb078080 Zea mays HOM05D005843 ORTHO05D007781 6.1e-81 305.8 342 48.0
Nitab4.5_0002018g0090 Nicotiana tabacum HOM05D005843 ORTHO05D007781 4.8e-78 296.2 245 61.2
AagrBONN_evm.TU.Sc2ySwM_117.1914 Anthoceros agrestis HOM05D005843 ORTHO05D007781 5.5e-74 282.7 450 40.0
SGA_v2.0_scaffold75G24944 Striga asiatica HOM05D005843 ORTHO05D007781 7.2e-74 282.3 426 43.4
A03p00710 Brassica napus HOM05D005843 ORTHO05D007781 2.7e-73 280.4 196 70.4
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 5.0e-67 259.6 391 43.2
Cre01.g041300 Chlamydomonas reinhardtii HOM05D005843 ORTHO05D007781 5.7e-55 219.5 533 32.6
TAR636G2087 Trochodendron aralioides HOM05D005843 ORTHO05D007781 2.4e-53 214.2 174 64.9
CBR_g29861 Chara braunii HOM05D005843 ORTHO05D000002 8.6e-51 205.7 360 38.1
TAR636G1000 Trochodendron aralioides HOM05D005843 ORTHO05D007781 2.4e-45 187.6 126 73.8
TAR636G1324 Trochodendron aralioides HOM05D005843 ORTHO05D007781 2.4e-45 187.6 126 73.8
VMungo1309G2290 Vigna mungo HOM05D005843 ORTHO05D007781 1.6e-44 184.9 135 67.4
DCAR_015734 Daucus carota HOM05D005843 ORTHO05D007781 3.0e-43 180.6 135 65.2
AUR62040681 Chenopodium quinoa HOM05D005843 ORTHO05D007781 6.6e-35 152.9 191 46.1
Haze_26583 Corylus avellana HOM05D005843 ORTHO05D007781 2.2e-30 137.9 506 27.3
VMungo1309G1664 Vigna mungo HOM05D005843 ORTHO05D007781 3.4e-23 114.0 218 37.6
DCAR_015735 Daucus carota HOM05D005843 ORTHO05D007781 2.2e-22 111.3 60 80.0
SEGI_06123 Sequoiadendron giganteum HOM05D005843 ORTHO05D007781 2.4e-21 107.8 116 47.4
SEGI_08652 Sequoiadendron giganteum HOM05D005843 ORTHO05D000001 2.3e-19 101.3 76 57.9
C03p92170 Brassica napus HOM05D005843 ORTHO05D040940 3.9e-19 100.5 67 70.1
BolC3t21533H Brassica oleracea HOM05D005843 ORTHO05D040940 3.9e-19 100.5 67 70.1
Hma1.2p1_1611F.1_g293520 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 4.3e-18 97.1 52 78.8
TAR636G3605 Trochodendron aralioides HOM05D005843 ORTHO05D007781 5.6e-18 96.7 57 71.9
BraA10t45356Z Brassica rapa HOM05D005843 ORTHO05D007781 5.8e-15 86.7 65 61.5
TAR636G0893 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.1e-10 72.4 64 59.4
SEGI_16582 Sequoiadendron giganteum HOM05D005843 ORTHO05D014789 5.6e-10 70.1 115 36.5


User provided reference genes

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