Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.7e-41 171.0 81 100.0
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.7e-41 171.0 81 100.0
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.8e-41 170.6 81 98.8
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 1.2e-34 149.4 81 85.2
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 2.5e-29 131.7 83 77.1
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.2e-23 112.8 83 69.9
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.2e-23 112.8 83 69.9
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.7e-23 111.7 83 72.3
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 6.6e-22 107.1 71 64.8
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 5.6e-21 104.0 80 61.2
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 7.3e-21 103.6 81 59.3
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 7.3e-21 103.6 80 61.2
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 4.7e-20 100.9 81 58.0
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 2.3e-19 98.6 74 62.2
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 5.2e-19 97.4 72 58.3
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 6.8e-19 97.1 73 63.0
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 3.4e-18 94.7 74 59.5
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 9.8e-18 93.2 71 59.2
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 2.2e-17 92.0 77 58.4
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 2.2e-17 92.0 77 58.4
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 2.9e-17 91.7 75 58.7
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 3.7e-17 91.3 74 55.4
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 4.9e-17 90.9 80 55.0
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 4.9e-17 90.9 74 56.8
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 6.4e-17 90.5 69 60.9
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 8.3e-17 90.1 75 57.3
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 1.1e-16 89.7 80 51.2
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 1.1e-16 89.7 74 54.1
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 1.4e-16 89.4 76 56.6
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 1.9e-16 89.0 74 54.1
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.4e-16 88.6 73 50.7
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 2.4e-16 88.6 74 52.7
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 2.4e-16 88.6 74 54.1
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 2.4e-16 88.6 73 58.9
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 3.2e-16 88.2 73 53.4
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 4.1e-16 87.8 75 49.3
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 4.1e-16 87.8 73 50.7
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 9.2e-16 86.7 81 49.4
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.2e-15 86.3 71 54.9
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 1.2e-15 86.3 71 54.9
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.2e-15 86.3 79 51.9
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 1.2e-15 86.3 79 53.2
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.2e-15 86.3 73 49.3
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.2e-15 86.3 79 51.9
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.2e-15 86.3 75 58.7
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 1.6e-15 85.9 74 52.7
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 2.0e-15 85.5 78 53.8
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 2.0e-15 85.5 73 49.3
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 2.0e-15 85.5 73 49.3
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 3.5e-15 84.7 78 50.0
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 1.0e-14 83.2 75 53.3
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.3e-14 82.8 78 48.7
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 1.3e-14 82.8 67 56.7
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 1.7e-14 82.4 80 53.8
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.7e-14 82.4 74 55.4
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.7e-14 82.4 74 55.4
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 2.3e-14 82.0 74 56.8
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 2.3e-14 82.0 73 60.3
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 3.9e-14 81.3 78 56.4
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 5.0e-14 80.9 48 68.8
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 5.0e-14 80.9 48 68.8
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 5.0e-14 80.9 81 51.9
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 5.0e-14 80.9 81 44.4
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 5.0e-14 80.9 78 50.0
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 6.6e-14 80.5 76 51.3
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 8.6e-14 80.1 52 67.3
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 3.3e-13 78.2 81 49.4
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 3.3e-13 78.2 74 51.4
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 4.3e-13 77.8 70 54.3
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 5.6e-13 77.4 76 48.7
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 7.3e-13 77.0 76 46.1
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 9.5e-13 76.6 73 47.9
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 9.5e-13 76.6 74 51.4
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 9.5e-13 76.6 82 47.6
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.6e-12 75.9 74 50.0
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 1.6e-12 75.9 72 48.6
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.1e-12 75.5 75 50.7
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 6.2e-12 73.9 79 46.8
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 8.1e-12 73.6 81 48.1
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.8e-11 72.4 83 53.0
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 1.8e-11 72.4 82 46.3
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.3e-11 72.0 77 49.4
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 3.1e-11 71.6 76 44.7
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 6.8e-11 70.5 78 48.7
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 8.9e-11 70.1 78 46.2
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 2.0e-10 68.9 73 50.7
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 4.4e-10 67.8 86 45.3
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 4.4e-10 67.8 79 44.3
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.4e-10 67.8 41 58.5
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 4.4e-10 67.8 80 43.8
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 5.8e-10 67.4 75 40.0
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 7.5e-10 67.0 74 43.2
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 9.9e-10 66.6 38 60.5
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 9.9e-10 66.6 76 48.7
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 9.9e-10 66.6 80 42.5
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 1.3e-09 66.2 84 44.0
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 1.7e-09 65.9 92 43.5
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 1.7e-09 65.9 82 41.5
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 1.7e-09 65.9 73 46.6
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 2.2e-09 65.5 82 40.2
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 6.4e-09 63.9 40 60.0
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 6.4e-09 63.9 79 46.8
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 8.3e-09 63.5 81 43.2
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 8.3e-09 63.5 80 41.2
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 8.3e-09 63.5 36 72.2
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 8.3e-09 63.5 36 72.2
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 8.3e-09 63.5 66 47.0
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 5.4e-08 60.8 37 64.9
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 7.1e-08 60.5 73 39.7
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 1.6e-07 59.3 74 43.2
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 2.1e-07 58.9 83 42.2
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 2.7e-07 58.5 81 40.7
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 3.5e-07 58.2 82 39.0
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 3.5e-07 58.2 72 37.5
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 7.8e-07 57.0 70 44.3
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 3.9e-06 54.7 35 54.3


User provided reference genes

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