Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 7.0e-84 313.9 159 100.0
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.7e-82 309.3 159 98.7
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.2e-82 308.9 159 98.7
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.6e-80 302.8 159 95.0
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.1e-80 302.4 158 95.6
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.1e-80 302.4 158 95.6
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 6.1e-80 300.8 159 94.3
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 9.7e-78 293.5 160 93.1
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 8.2e-77 290.4 160 90.6
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 1.1e-76 290.0 155 92.9
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 1.6e-75 286.2 159 90.6
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 3.5e-75 285.0 156 89.7
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 2.2e-74 282.3 154 90.3
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 3.8e-74 281.6 154 90.3
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 6.5e-74 280.8 155 89.0
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 6.5e-74 280.8 155 89.0
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 1.9e-73 279.3 158 86.7
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 4.2e-73 278.1 155 87.1
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 4.2e-73 278.1 155 89.0
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 1.2e-72 276.6 155 86.5
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 1.4e-71 273.1 154 85.7
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.4e-71 273.1 156 86.5
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 4.0e-71 271.6 155 85.2
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 4.0e-71 271.6 160 85.6
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 5.2e-71 271.2 160 83.8
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 1.2e-70 270.0 156 82.7
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 2.0e-70 269.2 156 84.6
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 2.0e-70 269.2 156 83.3
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 3.4e-70 268.5 154 84.4
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 4.4e-70 268.1 154 86.4
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 4.4e-70 268.1 159 82.4
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 5.7e-70 267.7 154 84.4
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 7.5e-70 267.3 156 84.0
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 9.8e-70 266.9 154 85.7
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 1.7e-69 266.2 160 84.4
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.7e-69 266.2 160 84.4
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.7e-69 266.2 160 84.4
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.7e-69 266.2 160 84.4
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.7e-69 266.2 160 84.4
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.7e-69 266.2 160 84.4
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 1.7e-69 266.2 154 82.5
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 1.7e-69 266.2 160 81.2
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 1.7e-69 266.2 154 83.8
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 2.2e-69 265.8 154 85.7
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 3.7e-69 265.0 154 82.5
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 4.8e-69 264.6 154 83.8
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 6.3e-69 264.2 156 81.4
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 6.3e-69 264.2 159 81.8
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 8.3e-69 263.8 156 80.8
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 1.1e-68 263.5 154 81.8
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 1.1e-68 263.5 155 82.6
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.4e-68 263.1 155 83.2
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 4.1e-68 261.5 155 81.3
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 7.0e-68 260.8 155 81.9
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 9.1e-68 260.4 140 92.1
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 3.5e-67 258.5 156 80.8
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 3.5e-67 258.5 155 80.6
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 4.5e-67 258.1 156 84.0
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 5.9e-67 257.7 156 79.5
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 7.7e-67 257.3 153 79.7
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 1.3e-66 256.5 154 81.2
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 2.2e-66 255.8 155 78.1
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 3.8e-66 255.0 156 79.5
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 5.0e-66 254.6 156 78.8
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 8.5e-66 253.8 153 78.4
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 1.5e-65 253.1 154 80.5
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 2.5e-65 252.3 154 81.8
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 5.5e-65 251.1 153 77.1
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 7.2e-65 250.8 153 79.1
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 1.6e-64 249.6 153 77.1
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.6e-64 249.6 160 76.9
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 2.1e-64 249.2 156 78.8
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 2.1e-64 249.2 156 77.6
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 2.1e-64 249.2 156 77.6
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.7e-64 248.8 160 76.9
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.7e-64 248.8 160 76.9
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 6.1e-64 247.7 157 79.6
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 8.0e-64 247.3 155 74.8
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 1.0e-63 246.9 159 74.8
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 1.0e-63 246.9 158 77.2
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 1.0e-63 246.9 156 77.6
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 1.0e-63 246.9 154 79.9
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 1.0e-63 246.9 154 76.6
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 3.0e-63 245.4 153 79.7
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 6.8e-63 244.2 160 75.0
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 6.8e-63 244.2 154 76.6
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 8.8e-63 243.8 160 76.2
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 8.8e-63 243.8 160 74.4
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 8.8e-63 243.8 154 75.3
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 8.8e-63 243.8 154 76.0
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.5e-62 243.0 154 74.7
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 1.5e-62 243.0 205 63.4
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.0e-62 242.7 154 74.0
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 3.4e-62 241.9 160 73.8
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 9.8e-62 240.4 155 76.8
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 9.8e-62 240.4 155 76.8
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 3.7e-61 238.4 160 72.5
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 6.3e-61 237.7 154 77.3
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 8.3e-61 237.3 156 71.8
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 8.3e-61 237.3 158 70.9
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 8.3e-61 237.3 158 70.9
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 8.3e-61 237.3 158 70.9
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 8.3e-61 237.3 158 70.9
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.1e-60 236.9 161 71.4
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 2.4e-60 235.7 158 70.3
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 4.1e-60 235.0 156 71.2
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 4.1e-60 235.0 156 71.2
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 4.1e-60 235.0 156 71.2
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 5.4e-60 234.6 158 69.6
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 1.6e-59 233.0 244 55.3
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 1.0e-58 230.3 135 83.0
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 1.3e-58 229.9 158 69.0
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 1.7e-58 229.6 158 70.3
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 1.5e-57 226.5 125 88.0
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 5.5e-57 224.6 138 80.4
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 8.0e-56 220.7 143 74.8
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.0e-55 220.3 123 87.0
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 4.0e-55 218.4 147 70.7
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 9.8e-54 213.8 161 68.3
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 3.7e-53 211.8 146 68.5
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.0e-50 203.8 162 64.2
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 3.9e-50 201.8 211 50.7
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 8.6e-50 200.7 298 44.0
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 1.6e-48 196.4 188 56.4
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 1.2e-46 190.3 123 75.6
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 9.8e-46 187.2 156 59.0
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.4e-44 182.6 140 68.6
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 3.2e-44 182.2 109 78.9
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.1e-39 167.2 97 86.6
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 6.4e-37 157.9 109 75.2
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 5.6e-33 144.8 133 54.9
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 1.6e-32 143.3 98 69.4
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 1.1e-31 140.6 154 48.1
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 5.8e-30 134.8 149 47.0
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 9.9e-30 134.0 149 46.3
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 6.0e-27 124.8 77 74.0
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 1.7e-26 123.2 145 53.1
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 2.3e-26 122.9 152 41.4
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.3e-26 122.9 130 50.8
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 7.3e-25 117.9 138 44.9
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 8.9e-23 110.9 65 78.5
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 1.2e-22 110.5 137 43.1
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.0e-22 109.8 96 62.5
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.0e-22 109.8 96 62.5
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.4e-22 108.6 65 80.0
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 5.8e-22 108.2 65 78.5
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 1.1e-20 104.0 64 78.1
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 1.4e-20 103.6 138 42.0
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.6e-19 100.1 64 75.0
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 5.1e-18 95.1 78 61.5
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 5.1e-18 95.1 101 55.4
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 8.7e-10 67.8 146 37.7
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 3.3e-09 65.9 69 55.1
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 9.6e-09 64.3 69 53.6
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 5.3e-07 58.5 46 67.4
Nn1g07333 Nelumbo nucifera HOM05D026918 ORTHO05D005698 7.6e-06 54.7 32 68.8


User provided reference genes

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