Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.7e-259 898.3 500 100.0
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.4e-255 885.2 500 98.0
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 2.4e-162 576.2 536 66.0
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 1.0e-157 560.8 535 66.9
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 4.0e-154 548.9 512 65.8
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 1.1e-140 504.2 550 57.8
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 3.7e-123 446.0 265 95.8
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.5e-121 440.7 514 54.9
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 5.7e-116 422.2 513 53.0
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 6.3e-115 418.7 563 50.8
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 5.3e-114 415.6 520 54.0
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 2.0e-113 413.7 529 52.9
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 4.2e-111 406.0 530 51.1
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 7.2e-111 405.2 530 51.1
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 5.7e-108 395.6 535 52.0
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 7.5e-108 395.2 524 51.9
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.1e-103 381.3 552 48.2
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.9e-103 380.6 532 48.1
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 3.2e-103 379.8 533 48.2
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 6.1e-102 375.6 526 51.0
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 6.1e-102 375.6 520 47.7
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 8.8e-101 371.7 504 51.6
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 2.6e-100 370.2 370 65.9
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 1.3e-99 367.9 522 51.3
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 3.7e-99 366.3 534 47.2
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 1.1e-98 364.8 525 48.4
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 3.1e-98 363.2 528 45.8
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.7e-97 360.1 532 49.8
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 5.5e-95 352.4 519 48.6
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 3.6e-94 349.7 536 43.1
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 2.0e-92 344.0 525 47.8
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 1.6e-89 334.3 512 45.1
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 1.6e-89 334.3 518 44.2
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 2.9e-88 330.1 497 45.3
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.6e-86 324.3 189 96.8
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.6e-86 323.2 551 42.6
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 6.1e-86 322.4 518 45.0
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 3.1e-85 320.1 519 44.1
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 8.9e-85 318.5 523 44.4
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 1.5e-84 317.8 520 44.6
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 2.2e-83 313.9 527 45.2
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.1e-82 311.6 442 46.4
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 2.7e-81 307.0 517 47.4
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 4.6e-81 306.2 518 40.9
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 6.0e-81 305.8 508 43.7
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 1.0e-80 305.1 518 41.9
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 5.0e-80 302.8 518 43.8
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.1e-79 301.6 406 49.3
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.9e-79 300.8 545 41.5
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 1.9e-79 300.8 517 45.3
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.5e-79 300.4 517 42.4
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 5.6e-79 299.3 525 43.8
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 7.3e-79 298.9 403 47.9
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 1.1e-77 295.0 480 48.3
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 4.0e-77 293.1 531 43.9
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.0e-76 290.8 459 44.4
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 5.8e-76 289.3 488 47.7
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 9.8e-76 288.5 469 46.9
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.3e-75 288.1 529 42.0
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 2.9e-75 287.0 483 43.5
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 1.4e-74 284.6 502 44.2
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 1.6e-73 281.2 368 48.4
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 1.6e-73 281.2 510 40.8
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 2.7e-73 280.4 564 39.7
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 6.0e-73 279.3 484 44.6
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 1.0e-72 278.5 511 40.9
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 1.0e-72 278.5 476 43.9
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 6.6e-72 275.8 413 45.5
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 6.6e-72 275.8 413 45.5
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 6.6e-72 275.8 510 42.4
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 6.6e-72 275.8 502 47.2
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 1.9e-71 274.2 458 44.5
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.7e-70 269.6 447 43.8
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 2.0e-68 264.2 460 44.8
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 2.6e-68 263.8 367 47.1
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 8.4e-67 258.8 495 45.1
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 8.4e-67 258.8 428 43.5
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 7.1e-66 255.8 461 40.1
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 2.1e-65 254.2 465 38.7
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 2.1e-65 254.2 512 39.6
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 8.6e-64 248.8 504 44.2
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 8.6e-64 248.8 510 39.0
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 1.5e-63 248.1 402 42.5
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 4.3e-63 246.5 565 35.8
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 1.2e-62 245.0 512 41.2
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 2.1e-62 244.2 505 41.0
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 4.7e-62 243.0 459 40.1
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 3.1e-61 240.4 528 36.4
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.2e-60 238.4 308 52.6
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 3.8e-59 233.4 515 38.4
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 3.2e-58 230.3 507 38.3
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 5.4e-58 229.6 461 39.5
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 7.1e-58 229.2 500 38.6
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 9.3e-58 228.8 525 37.5
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 5.1e-56 223.0 502 38.4
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 2.5e-55 220.7 560 34.3
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 3.3e-55 220.3 572 37.4
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 7.3e-55 219.2 524 38.0
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 3.6e-54 216.9 492 35.4
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 8.1e-54 215.7 417 39.6
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 5.3e-53 213.0 418 39.7
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 1.2e-52 211.8 516 34.1
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 1.5e-52 211.5 509 37.7
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 1.4e-50 204.9 502 37.1
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 2.4e-50 204.1 508 34.4
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 4.2e-50 203.4 484 38.4
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 1.0e-48 198.7 502 34.5
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 2.3e-48 197.6 506 32.2
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 1.1e-47 195.3 495 36.2
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 5.6e-47 193.0 501 34.3
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 1.3e-46 191.8 496 37.7
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 1.3e-46 191.8 483 34.6
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 1.6e-46 191.4 502 34.3
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 1.8e-45 188.0 502 36.1
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 3.1e-45 187.2 539 31.5
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 5.3e-45 186.4 515 39.4
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 4.5e-44 183.3 487 38.2
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 4.9e-43 179.9 401 36.2
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 6.4e-43 179.5 484 37.4
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 1.9e-42 177.9 487 31.4
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 1.6e-41 174.9 467 36.8
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 1.9e-39 167.9 467 37.0
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 2.5e-39 167.5 483 36.9
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 1.3e-38 165.2 329 41.6
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 1.3e-38 165.2 451 35.7
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.1e-37 162.2 301 42.9
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 8.4e-35 152.5 409 38.1
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 6.0e-33 146.4 449 29.8
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.0e-28 131.3 242 39.3
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 5.5e-26 123.2 130 50.8
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 6.7e-24 116.3 202 47.0
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.8e-21 108.2 285 34.7
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 6.9e-21 106.3 285 31.2
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 6.5e-19 99.8 113 54.0
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 2.5e-18 97.8 187 37.4
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.0e-16 92.4 174 33.3
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 8.8e-16 89.4 139 43.2
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 1.3e-14 85.5 73 56.2
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 3.7e-14 84.0 175 33.1
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 1.9e-10 71.6 186 38.7
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 9.7e-07 59.3 83 47.0
Gohir.A13G129050 Gossypium hirsutum HOM05D036141 ORTHO05D005785 1.7e-06 58.5 41 80.5
Gorai.013G148300 Gossypium raimondii HOM05D036141 ORTHO05D047776 8.2e-06 56.2 41 78.0


User provided reference genes

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