Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 3.5e-76 288.1 135 100.0
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 3.5e-76 288.1 135 100.0
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 3.2e-74 281.6 135 97.8
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 1.1e-61 240.0 135 81.5
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 1.4e-61 239.6 135 82.2
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 1.5e-58 229.6 135 77.0
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 4.3e-58 228.0 135 77.0
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 4.3e-58 228.0 132 76.5
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 9.5e-58 226.9 132 76.5
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.2e-57 226.5 135 76.3
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.2e-57 226.5 135 76.3
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 1.2e-57 226.5 135 76.3
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 2.1e-57 225.7 137 79.6
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 2.8e-57 225.3 135 76.3
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 2.8e-57 225.3 132 77.3
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 4.7e-57 224.6 135 77.0
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 6.2e-57 224.2 135 74.8
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 6.2e-57 224.2 135 76.3
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 8.0e-57 223.8 131 77.9
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 8.0e-57 223.8 132 81.1
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 1.4e-56 223.0 135 76.3
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 1.4e-56 223.0 135 75.6
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 1.8e-56 222.6 132 76.5
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.8e-56 222.6 132 76.5
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.8e-56 222.6 132 76.5
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 2.3e-56 222.2 135 73.3
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 3.1e-56 221.9 132 76.5
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 3.1e-56 221.9 135 76.3
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 4.0e-56 221.5 132 75.8
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 4.0e-56 221.5 132 76.5
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 5.2e-56 221.1 132 75.8
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 6.8e-56 220.7 132 76.5
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 1.2e-55 219.9 132 75.8
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 1.2e-55 219.9 135 74.8
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 1.5e-55 219.5 132 74.2
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 1.5e-55 219.5 131 76.3
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 1.5e-55 219.5 132 75.8
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 1.5e-55 219.5 132 74.2
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 2.0e-55 219.2 135 73.3
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 2.0e-55 219.2 135 73.3
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 2.0e-55 219.2 132 76.5
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 3.4e-55 218.4 135 71.9
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 4.4e-55 218.0 132 75.8
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 4.4e-55 218.0 132 74.2
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 5.8e-55 217.6 131 76.3
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 5.8e-55 217.6 132 74.2
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 5.8e-55 217.6 131 74.8
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 9.8e-55 216.9 132 74.2
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 1.3e-54 216.5 135 73.3
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 1.7e-54 216.1 135 72.6
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 1.7e-54 216.1 132 72.7
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 2.2e-54 215.7 132 72.7
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 3.7e-54 214.9 132 72.0
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 3.7e-54 214.9 132 70.5
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 3.7e-54 214.9 135 71.9
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 8.3e-54 213.8 135 72.6
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 8.3e-54 213.8 131 73.3
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 8.3e-54 213.8 132 73.5
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 1.1e-53 213.4 135 71.9
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 1.9e-53 212.6 132 74.2
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 2.4e-53 212.2 135 71.1
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 3.2e-53 211.8 132 75.8
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 4.1e-53 211.5 135 73.3
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 7.0e-53 210.7 132 71.2
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 7.0e-53 210.7 132 72.0
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 2.0e-52 209.1 131 72.5
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 3.5e-52 208.4 132 72.7
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 4.6e-52 208.0 132 72.0
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 1.7e-51 206.1 131 71.0
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 5.0e-51 204.5 132 72.7
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 8.6e-51 203.8 135 71.1
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 8.6e-51 203.8 135 67.4
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 1.1e-50 203.4 132 67.4
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.9e-50 202.6 131 70.2
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 3.3e-50 201.8 177 57.6
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.2e-49 199.9 131 70.2
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 2.1e-49 199.1 130 69.2
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 8.1e-49 197.2 131 69.5
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 3.1e-48 195.3 132 67.4
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 1.3e-46 189.9 125 72.8
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 1.3e-46 189.9 132 68.2
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 1.7e-46 189.5 132 68.9
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 5.4e-45 184.5 132 65.2
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.6e-44 183.0 131 63.4
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.1e-44 182.6 131 64.1
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 4.3e-42 174.9 133 60.9
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 5.6e-42 174.5 133 61.7
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 1.2e-41 173.3 133 60.2
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 1.6e-41 172.9 133 60.2
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 1.6e-41 172.9 133 60.9
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 8.1e-41 170.6 135 60.0
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 1.8e-40 169.5 133 58.6
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 1.8e-40 169.5 133 58.6
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 5.2e-40 167.9 133 59.4
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 6.8e-40 167.5 133 57.9
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 6.8e-40 167.5 133 57.9
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 6.8e-40 167.5 133 57.9
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 6.8e-40 167.5 229 41.0
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 2.0e-39 166.0 133 57.1
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 3.8e-38 161.8 155 52.9
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 8.4e-38 160.6 134 58.2
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 2.7e-36 155.6 131 53.4
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 3.5e-36 155.2 133 58.6
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 4.6e-36 154.8 132 53.0
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 4.3e-34 148.3 138 52.2
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 1.6e-33 146.4 135 53.3
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 4.7e-33 144.8 131 51.9
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 1.8e-32 142.9 86 74.4
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 3.1e-32 142.1 87 73.6
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 5.2e-32 141.4 132 51.5
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 1.2e-31 140.2 132 50.8
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 2.0e-31 139.4 102 58.8
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 7.1e-29 131.0 131 49.6
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.0e-27 127.1 82 70.7
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 8.1e-25 117.5 76 68.4
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 5.8e-23 111.3 106 53.8
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 3.2e-21 105.5 66 72.7
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 3.5e-20 102.1 72 66.7
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 3.6e-17 92.0 126 42.1
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 4.5e-15 85.1 48 79.2
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 9.9e-15 84.0 57 61.4
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 1.7e-14 83.2 48 77.1
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 1.2e-12 77.0 52 65.4
Cre07.g315100 Chlamydomonas reinhardtii HOM05D006442 ORTHO05D007980 5.1e-11 71.6 134 33.6
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 1.9e-10 69.7 46 67.4
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 1.6e-09 66.6 43 67.4


User provided reference genes

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