Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G091000 Gossypium raimondii HOM05D002421 ORTHO05D002560 5.9e-42 173.7 83 100.0
Gohir.D09G075800 Gossypium hirsutum HOM05D002421 ORTHO05D002560 1.4e-40 169.1 82 97.6
Gohir.A13G035600 Gossypium hirsutum HOM05D002421 ORTHO05D002560 1.9e-24 115.5 60 91.7
Gorai.013G038300 Gossypium raimondii HOM05D002421 ORTHO05D002560 1.9e-24 115.5 60 91.7
Gohir.D13G033900 Gossypium hirsutum HOM05D002421 ORTHO05D002560 1.6e-23 112.5 60 90.0
Duzib248G0172 Durio zibethinus HOM05D002421 ORTHO05D002560 1.0e-22 109.8 60 86.7
Duzib052G0194 Durio zibethinus HOM05D002421 ORTHO05D002560 1.5e-21 105.9 60 83.3
COL.COLO4_11776 Corchorus olitorius HOM05D002421 ORTHO05D002560 5.7e-21 104.0 68 75.0
Duzib132G1252 Durio zibethinus HOM05D002421 ORTHO05D002560 1.3e-20 102.8 60 80.0
Thecc.02G088800 Theobroma cacao HOM05D002421 ORTHO05D002560 1.3e-17 92.8 60 76.7
CSS0045894 Camellia sinensis var. sinensis HOM05D002421 ORTHO05D002560 1.6e-15 85.9 59 67.8
Peaxi162Scf00152g00144 Petunia axillaris HOM05D002421 ORTHO05D002560 6.1e-15 84.0 66 62.1
CSS0010107 Camellia sinensis var. sinensis HOM05D002421 ORTHO05D002560 8.0e-15 83.6 54 70.4
Dinv24298 Davidia involucrata HOM05D002421 ORTHO05D002560 1.8e-14 82.4 64 64.1
Dinv19383 Davidia involucrata HOM05D002421 ORTHO05D002560 2.3e-14 82.0 66 60.6
Cc02_g22720 Coffea canephora HOM05D002421 ORTHO05D002560 3.0e-14 81.6 66 62.1
Ciclev10001863m.g Citrus clementina HOM05D002421 ORTHO05D002560 5.2e-14 80.9 60 60.0
Duzib116G0924 Durio zibethinus HOM05D002421 ORTHO05D002560 7.5e-13 77.0 64 60.9
Peaxi162Scf00011g00061 Petunia axillaris HOM05D002421 ORTHO05D002560 7.5e-13 77.0 65 61.5
Ah.05g172760 Amaranthus hybridus HOM05D002421 ORTHO05D002560 9.8e-13 76.6 66 60.6
Nitab4.5_0000816g0120 Nicotiana tabacum HOM05D002421 ORTHO05D002560 9.8e-13 76.6 65 58.5
PGSC0003DMG400023770 Solanum tuberosum HOM05D002421 ORTHO05D002560 1.3e-12 76.3 65 60.0
Nitab4.5_0001744g0060 Nicotiana tabacum HOM05D002421 ORTHO05D002560 1.7e-12 75.9 65 60.0
Actinidia00201 Actinidia chinensis HOM05D002421 ORTHO05D002560 2.2e-12 75.5 66 56.1
Nn1g08511 Nelumbo nucifera HOM05D002421 ORTHO05D002560 2.2e-12 75.5 64 62.5
Nn5g27932 Nelumbo nucifera HOM05D002421 ORTHO05D002560 2.2e-12 75.5 66 62.1
EL10Ac1g00051 Beta vulgaris HOM05D002421 ORTHO05D002560 2.8e-12 75.1 66 60.6
Gohir.A06G040100 Gossypium hirsutum HOM05D002421 ORTHO05D002560 2.8e-12 75.1 64 59.4
TAR624G0925 Trochodendron aralioides HOM05D002421 ORTHO05D002560 2.8e-12 75.1 59 62.7
CAN.G798.17 Capsicum annuum HOM05D002421 ORTHO05D002560 3.7e-12 74.7 65 58.5
Lj9A304T85 Lonicera japonica HOM05D002421 ORTHO05D002560 3.7e-12 74.7 63 54.0
Manes.10G122100 Manihot esculenta HOM05D002421 ORTHO05D002560 3.7e-12 74.7 60 60.0
Hund16814 Selenicereus undatus HOM05D002421 ORTHO05D002560 3.7e-12 74.7 66 59.1
QL02p099348 Quercus lobata HOM05D002421 ORTHO05D002560 4.8e-12 74.3 59 62.7
Manes.02G157800 Manihot esculenta HOM05D002421 ORTHO05D002560 8.3e-12 73.6 59 61.0
TWI12G1261 Tripterygium wilfordii HOM05D002421 ORTHO05D002560 8.3e-12 73.6 59 59.3
Gohir.D06G041100 Gossypium hirsutum HOM05D002421 ORTHO05D002560 1.1e-11 73.2 64 59.4
Gorai.010G045900 Gossypium raimondii HOM05D002421 ORTHO05D002560 1.1e-11 73.2 64 59.4
QL12p035461 Quercus lobata HOM05D002421 ORTHO05D002560 1.1e-11 73.2 64 59.4
Atru.chr3.1576 Acer truncatum HOM05D002421 ORTHO05D002560 1.4e-11 72.8 74 58.1
Atru.chr3.1595 Acer truncatum HOM05D002421 ORTHO05D002560 1.4e-11 72.8 74 58.1
Duzib093G2137 Durio zibethinus HOM05D002421 ORTHO05D002560 1.4e-11 72.8 54 66.7
Manes.18G072000 Manihot esculenta HOM05D002421 ORTHO05D002560 1.4e-11 72.8 59 59.3
Thecc.08G115500 Theobroma cacao HOM05D002421 ORTHO05D002560 1.4e-11 72.8 54 66.7
GSVIVG01008955001 Vitis vinifera HOM05D002421 ORTHO05D002560 1.4e-11 72.8 54 64.8
Aqoxy5G02457 Aquilegia oxysepala HOM05D002421 ORTHO05D002560 1.8e-11 72.4 64 57.8
Oeu004782.1 Olea europaea HOM05D002421 ORTHO05D002560 1.8e-11 72.4 59 59.3
GSVIVG01022844001 Vitis vinifera HOM05D002421 ORTHO05D002560 1.8e-11 72.4 64 56.2
ClCG08G010880 Citrullus lanatus HOM05D002421 ORTHO05D002560 2.4e-11 72.0 64 57.8
MELO3C011375.2 Cucumis melo HOM05D002421 ORTHO05D002560 2.4e-11 72.0 64 57.8
CsaV3_1G023060 Cucumis sativus L. HOM05D002421 ORTHO05D002560 2.4e-11 72.0 64 57.8
Duzib041G0508 Durio zibethinus HOM05D002421 ORTHO05D002560 2.4e-11 72.0 53 67.9
Oeu030022.1 Olea europaea HOM05D002421 ORTHO05D002560 2.4e-11 72.0 59 59.3
Solyc01g104010.2 Solanum lycopersicum HOM05D002421 ORTHO05D002560 2.4e-11 72.0 65 56.9
Sopen01g046410 Solanum pennellii HOM05D002421 ORTHO05D002560 2.4e-11 72.0 65 56.9
Dinv27395 Davidia involucrata HOM05D002421 ORTHO05D002560 3.1e-11 71.6 54 64.8
Hund27066 Selenicereus undatus HOM05D002421 ORTHO05D002560 3.1e-11 71.6 66 56.1
TWI56G1379 Tripterygium wilfordii HOM05D002421 ORTHO05D002560 3.1e-11 71.6 54 64.8
TAR628G0220 Trochodendron aralioides HOM05D002421 ORTHO05D002560 3.1e-11 71.6 59 64.4
Potri.002G090300 Populus trichocarpa HOM05D002421 ORTHO05D002560 4.1e-11 71.2 54 64.8
Sabra02G0071100 Salix brachista HOM05D002421 ORTHO05D002560 4.1e-11 71.2 54 64.8
Sabra05G0128400 Salix brachista HOM05D002421 ORTHO05D002560 4.1e-11 71.2 54 64.8
Sed0006077 Sechium edule HOM05D002421 ORTHO05D002560 4.1e-11 71.2 59 61.0
SGA_v2.0_scaffold25G11083 Striga asiatica HOM05D002421 ORTHO05D002560 5.4e-11 70.9 61 59.0
TAR293G0004 Trochodendron aralioides HOM05D002421 ORTHO05D002560 5.4e-11 70.9 60 58.3
TAR381G1288 Trochodendron aralioides HOM05D002421 ORTHO05D002560 5.4e-11 70.9 60 58.3
vmacro12524 Vaccinium macrocarpon HOM05D002421 ORTHO05D002560 5.4e-11 70.9 61 55.7
Haze_00541 Corylus avellana HOM05D002421 ORTHO05D002560 7.0e-11 70.5 64 56.2
Oeu017870.1 Olea europaea HOM05D002421 ORTHO05D002560 7.0e-11 70.5 59 55.9
Sed0011760 Sechium edule HOM05D002421 ORTHO05D002560 7.0e-11 70.5 59 57.6
Cfa015948 Carpinus fangiana HOM05D002421 ORTHO05D002560 9.1e-11 70.1 59 55.9
Potri.005G170700 Populus trichocarpa HOM05D002421 ORTHO05D002560 9.1e-11 70.1 54 63.0
Oeu061541.2 Olea europaea HOM05D002421 ORTHO05D002560 1.2e-10 69.7 57 56.1
Prupe.1G507700 Prunus persica HOM05D002421 ORTHO05D002560 1.2e-10 69.7 54 63.0
RcHm_v2.0_Chr7g0240481 Rosa chinensis HOM05D002421 ORTHO05D002560 1.6e-10 69.3 65 52.3
MSTRG.24136 Avicennia marina HOM05D002421 ORTHO05D002560 2.0e-10 68.9 59 57.6
Eucgr.G00561 Eucalyptus grandis HOM05D002421 ORTHO05D002560 2.0e-10 68.9 58 53.4
CANSAT25G0157 Cannabis sativa HOM05D002421 ORTHO05D002560 2.7e-10 68.6 62 58.1
TWI36G0880 Tripterygium wilfordii HOM05D002421 ORTHO05D002560 2.7e-10 68.6 60 58.3
Actinidia02590 Actinidia chinensis HOM05D002421 ORTHO05D002560 3.5e-10 68.2 59 52.5
Gohir.A02G075200 Gossypium hirsutum HOM05D002421 ORTHO05D002560 3.5e-10 68.2 61 54.1
TAR376G0702 Trochodendron aralioides HOM05D002421 ORTHO05D002560 3.5e-10 68.2 54 64.8
AUR62004681 Chenopodium quinoa HOM05D002421 ORTHO05D002560 5.9e-10 67.4 73 53.4
AUR62023599 Chenopodium quinoa HOM05D002421 ORTHO05D002560 5.9e-10 67.4 73 53.4
Cfa021316 Carpinus fangiana HOM05D002421 ORTHO05D002560 7.7e-10 67.0 59 52.5
Hma1.2p1_0251F.1_g102660 Hydrangea macrophylla HOM05D002421 ORTHO05D002560 7.7e-10 67.0 82 47.6
Prupe.1G572300 Prunus persica HOM05D002421 ORTHO05D002560 7.7e-10 67.0 61 60.7
PGR042G2169 Punica granatum HOM05D002421 ORTHO05D002560 7.7e-10 67.0 64 57.8
MSTRG.22436 Avicennia marina HOM05D002421 ORTHO05D002560 1.0e-09 66.6 59 54.2
Gohir.D02G082300 Gossypium hirsutum HOM05D002421 ORTHO05D002560 1.3e-09 66.2 61 54.1
Gorai.005G092200 Gossypium raimondii HOM05D002421 ORTHO05D002560 1.3e-09 66.2 61 54.1
Psat7g062880 Pisum sativum HOM05D002421 ORTHO05D002560 1.3e-09 66.2 60 51.7
vmacro01751 Vaccinium macrocarpon HOM05D002421 ORTHO05D002560 1.3e-09 66.2 61 59.0
Dinv15084 Davidia involucrata HOM05D002421 ORTHO05D002560 2.2e-09 65.5 61 52.5
Eucgr.F04385 Eucalyptus grandis HOM05D002421 ORTHO05D002560 2.2e-09 65.5 62 56.5
Nitab4.5_0000051g0290 Nicotiana tabacum HOM05D002421 ORTHO05D002560 2.2e-09 65.5 67 52.2
DCAR_014273 Daucus carota HOM05D002421 ORTHO05D002560 2.9e-09 65.1 54 57.4
Gohir.A05G230900 Gossypium hirsutum HOM05D002421 ORTHO05D002560 2.9e-09 65.1 64 56.2
Gohir.D05G233400 Gossypium hirsutum HOM05D002421 ORTHO05D002560 2.9e-09 65.1 64 56.2
Gorai.009G241500 Gossypium raimondii HOM05D002421 ORTHO05D002560 2.9e-09 65.1 64 56.2
CiPaw.05G230400 Carya illinoinensis HOM05D002421 ORTHO05D002560 3.8e-09 64.7 64 54.7
Lalb_Chr10g0102041 Lupinus albus HOM05D002421 ORTHO05D002560 3.8e-09 64.7 55 58.2
SGA_v2.0_scaffold28G12053 Striga asiatica HOM05D002421 ORTHO05D002560 3.8e-09 64.7 61 55.7
TPR.G23095 Trifolium pratense HOM05D002421 ORTHO05D002560 3.8e-09 64.7 62 51.6
MSTRG.16511 Avicennia marina HOM05D002421 ORTHO05D002560 5.0e-09 64.3 58 58.6
Oeu000110.1 Olea europaea HOM05D002421 ORTHO05D002560 5.0e-09 64.3 69 52.2
Atru.chr13.1303 Acer truncatum HOM05D002421 ORTHO05D002560 6.5e-09 63.9 64 53.1
Ciclev10001805m.g Citrus clementina HOM05D002421 ORTHO05D002560 6.5e-09 63.9 75 50.7
Oeu049826.1 Olea europaea HOM05D002421 ORTHO05D002560 6.5e-09 63.9 57 50.9
CiPaw.06G023800 Carya illinoinensis HOM05D002421 ORTHO05D002560 8.5e-09 63.5 64 53.1
DCAR_025346 Daucus carota HOM05D002421 ORTHO05D002560 8.5e-09 63.5 61 50.8
FvH4_5g38440 Fragaria vesca HOM05D002421 ORTHO05D002560 8.5e-09 63.5 62 53.2
FAN08G2760 Fragaria x ananassa HOM05D002421 ORTHO05D002560 8.5e-09 63.5 62 53.2
FAN13G0570 Fragaria x ananassa HOM05D002421 ORTHO05D002560 8.5e-09 63.5 62 53.2
CSS0019481 Camellia sinensis var. sinensis HOM05D002421 ORTHO05D002560 1.1e-08 63.2 58 56.9
CiPaw.06G146000 Carya illinoinensis HOM05D002421 ORTHO05D002560 1.1e-08 63.2 63 57.1
Nitab4.5_0000695g0170 Nicotiana tabacum HOM05D002421 ORTHO05D002560 1.1e-08 63.2 60 55.0
Psat1g222000 Pisum sativum HOM05D002421 ORTHO05D002560 1.1e-08 63.2 70 48.6
Cc00_g04220 Coffea canephora HOM05D002421 ORTHO05D002560 1.5e-08 62.8 58 63.8
DCAR_004028 Daucus carota HOM05D002421 ORTHO05D002560 1.5e-08 62.8 69 50.7
Medtr8g088750 Medicago truncatula HOM05D002421 ORTHO05D002560 1.5e-08 62.8 60 50.0
Psat5g135720 Pisum sativum HOM05D002421 ORTHO05D002560 1.5e-08 62.8 65 56.9
TPR.G2145 Trifolium pratense HOM05D002421 ORTHO05D002560 1.5e-08 62.8 71 46.5
Actinidia23306 Actinidia chinensis HOM05D002421 ORTHO05D002560 1.9e-08 62.4 59 50.8
Glyma.13G085000 Glycine max HOM05D002421 ORTHO05D002560 1.9e-08 62.4 63 58.7
TWI23G0611 Tripterygium wilfordii HOM05D002421 ORTHO05D002560 1.9e-08 62.4 68 52.9
FAN04G0083 Fragaria x ananassa HOM05D002421 ORTHO05D002560 2.5e-08 62.0 62 51.6
Phvul.006G215900 Phaseolus vulgaris HOM05D002421 ORTHO05D002560 2.5e-08 62.0 60 53.3
Glyma.08G187700 Glycine max HOM05D002421 ORTHO05D002560 3.2e-08 61.6 67 50.7
Lj1g0003145 Lotus japonicus HOM05D002421 ORTHO05D002560 3.2e-08 61.6 57 59.6
TPR.G32958 Trifolium pratense HOM05D002421 ORTHO05D002560 3.2e-08 61.6 66 54.5
Glyma.08G127100 Glycine max HOM05D002421 ORTHO05D002560 4.2e-08 61.2 67 47.8
Lalb_Chr11g0065621 Lupinus albus HOM05D002421 ORTHO05D002560 4.2e-08 61.2 55 61.8
MD15G1360100 Malus domestica HOM05D002421 ORTHO05D002560 4.2e-08 61.2 68 52.9
Rhsim11G0127900 Rhododendron simsii HOM05D002421 ORTHO05D002560 4.2e-08 61.2 54 55.6
TWI59G0213 Tripterygium wilfordii HOM05D002421 ORTHO05D002560 4.2e-08 61.2 70 52.9
Cpa.g.sc49.117 Carica papaya HOM05D002421 ORTHO05D002560 5.5e-08 60.8 61 57.4
Migut.N03334 Erythranthe guttata HOM05D002421 ORTHO05D002560 5.5e-08 60.8 59 52.5
Lj4A520T17 Lonicera japonica HOM05D002421 ORTHO05D002560 5.5e-08 60.8 56 55.4
Medtr3g073480 Medicago truncatula HOM05D002421 ORTHO05D002560 5.5e-08 60.8 67 53.7
PSO017G4470 Papaver somniferum HOM05D002421 ORTHO05D002560 5.5e-08 60.8 64 54.7
PSO170G1813 Papaver somniferum HOM05D002421 ORTHO05D002560 5.5e-08 60.8 64 54.7
Phvul.002G249400 Phaseolus vulgaris HOM05D002421 ORTHO05D002560 5.5e-08 60.8 65 46.2
SGA_v2.0_scaffold1673G54006 Striga asiatica HOM05D002421 ORTHO05D002560 5.5e-08 60.8 63 52.4
arahy.Tifrunner.gnm1.ann1.EG08JD Arachis hypogaea HOM05D002421 ORTHO05D002560 7.2e-08 60.5 56 60.7
arahy.Tifrunner.gnm1.ann1.QF5GL7 Arachis hypogaea HOM05D002421 ORTHO05D002560 7.2e-08 60.5 56 60.7
Glyma.12G170400 Glycine max HOM05D002421 ORTHO05D002560 7.2e-08 60.5 60 50.0
Haze_01741 Corylus avellana HOM05D002421 ORTHO05D002560 9.4e-08 60.1 49 57.1
MBI09_g08093_MAGBIO Magnolia biondii HOM05D002421 ORTHO05D002560 9.4e-08 60.1 64 57.8
VMungo0251G2838 Vigna mungo HOM05D002421 ORTHO05D002560 9.4e-08 60.1 65 46.2
VMungo1309G0704 Vigna mungo HOM05D002421 ORTHO05D002560 9.4e-08 60.1 55 61.8
Hma1.2p1_1197F.1_g266120 Hydrangea macrophylla HOM05D002421 ORTHO05D002560 1.6e-07 59.3 66 48.5
Sopen11g008340 Solanum pennellii HOM05D002421 ORTHO05D002560 1.6e-07 59.3 58 56.9
PGSC0003DMG400006547 Solanum tuberosum HOM05D002421 ORTHO05D002560 1.6e-07 59.3 69 50.7
Migut.C01201 Erythranthe guttata HOM05D002421 ORTHO05D002560 2.1e-07 58.9 64 48.4
Lalb_Chr08g0241751 Lupinus albus HOM05D002421 ORTHO05D002560 3.6e-07 58.2 55 60.0
PGR042G3159 Punica granatum HOM05D002421 ORTHO05D002560 3.6e-07 58.2 64 54.7
Ca_00064_v3 Cicer arietinum L. HOM05D002421 ORTHO05D002560 4.7e-07 57.8 67 47.8
PGR044G1846 Punica granatum HOM05D002421 ORTHO05D002560 4.7e-07 57.8 60 51.7
SalBow7G1908 Salvia bowleyana HOM05D002421 ORTHO05D002560 6.1e-07 57.4 55 56.4
CsaV3_3G019170 Cucumis sativus L. HOM05D002421 ORTHO05D002560 8.0e-07 57.0 68 47.1
VMungo0540G0238 Vigna mungo HOM05D002421 ORTHO05D002560 8.0e-07 57.0 65 47.7
ClCG05G009550 Citrullus lanatus HOM05D002421 ORTHO05D002560 1.0e-06 56.6 68 44.1
Phvul.008G168900 Phaseolus vulgaris HOM05D002421 ORTHO05D002560 1.0e-06 56.6 61 52.5
MELO3C019452.2 Cucumis melo HOM05D002421 ORTHO05D002560 1.4e-06 56.2 68 47.1
Eucgr.F03734 Eucalyptus grandis HOM05D002421 ORTHO05D002560 1.4e-06 56.2 68 50.0
Sc23g0000990 Simmondsia chinensis HOM05D002421 ORTHO05D002560 1.4e-06 56.2 60 51.7
CAN.G393.1 Capsicum annuum HOM05D002421 ORTHO05D002560 1.8e-06 55.8 63 54.0
Lj7A306T34 Lonicera japonica HOM05D002421 ORTHO05D002560 2.3e-06 55.5 55 54.5
MD08G1173600 Malus domestica HOM05D002421 ORTHO05D002560 2.3e-06 55.5 68 50.0
MD12G1145700 Malus domestica HOM05D002421 ORTHO05D002560 2.3e-06 55.5 58 55.2
Glyma.14G166900 Glycine max HOM05D002421 ORTHO05D002560 3.0e-06 55.1 62 51.6
Potri.003G018700 Populus trichocarpa HOM05D002421 ORTHO05D002560 3.0e-06 55.1 64 51.6
CDE08G1366 Ceratophyllum demersum HOM05D002421 ORTHO05D002560 4.0e-06 54.7 59 50.8
Rhsim11G0063900 Rhododendron simsii HOM05D002421 ORTHO05D002560 4.0e-06 54.7 63 46.0
unitig_0.g912 Utricularia gibba HOM05D002421 ORTHO05D002560 6.8e-06 53.9 63 47.6
Lsat_1_v5_gn_9_121101 Lactuca sativa HOM05D002421 ORTHO05D002560 8.8e-06 53.5 70 45.7
Lj6g0006413 Lotus japonicus HOM05D002421 ORTHO05D002560 8.8e-06 53.5 60 46.7


User provided reference genes

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