Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.8e-51 205.7 106 100.0
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 9.8e-50 199.9 106 97.2
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.2e-46 188.7 106 90.6
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 7.8e-31 137.1 110 66.4
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 3.9e-30 134.8 110 63.6
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.3e-25 119.8 110 58.2
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.4e-24 115.5 110 56.4
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.4e-24 115.5 110 56.4
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 3.2e-24 115.2 110 55.5
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.6e-23 112.8 110 60.0
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.5e-23 111.7 110 59.1
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.7e-22 109.4 113 54.0
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.7e-22 109.4 113 54.0
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.9e-22 108.2 113 53.1
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.0e-22 107.8 110 58.2
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.3e-21 105.1 110 52.7
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 5.2e-19 97.8 94 54.3
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 4.9e-17 91.3 92 56.5
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 6.4e-17 90.9 92 54.3
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.1e-16 90.1 108 55.6
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 1.9e-16 89.4 92 54.3
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 2.4e-16 89.0 114 50.9
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 3.2e-16 88.6 94 53.2
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 7.1e-16 87.4 91 52.7
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.1e-15 85.9 90 52.2
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 2.1e-15 85.9 90 52.2
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 2.7e-15 85.5 92 52.2
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 3.5e-15 85.1 95 52.6
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 4.6e-15 84.7 99 52.5
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 6.0e-15 84.3 105 48.6
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 6.0e-15 84.3 95 52.6
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 1.0e-14 83.6 96 54.2
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.0e-14 83.6 87 49.4
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 1.0e-14 83.6 91 52.7
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.0e-14 83.6 89 50.6
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.7e-14 82.8 100 54.0
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.7e-14 82.8 104 48.1
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 2.3e-14 82.4 101 46.5
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 8.6e-14 80.5 99 48.5
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 8.6e-14 80.5 91 47.3
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 1.1e-13 80.1 87 48.3
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.1e-13 80.1 95 50.5
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 1.5e-13 79.7 94 54.3
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.5e-13 79.7 107 46.7
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.5e-13 79.7 111 43.2
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 1.5e-13 79.7 109 50.5
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 1.9e-13 79.3 94 51.1
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.9e-13 79.3 110 48.2
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.9e-13 79.3 86 54.7
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.9e-13 79.3 92 50.0
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.5e-13 79.0 93 48.4
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 3.3e-13 78.6 97 48.5
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 4.3e-13 78.2 85 51.8
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 4.3e-13 78.2 110 48.2
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.3e-13 78.2 95 51.6
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 5.6e-13 77.8 93 47.3
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.6e-13 77.8 97 51.5
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.6e-13 77.8 94 47.9
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 7.3e-13 77.4 111 48.6
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 7.3e-13 77.4 105 46.7
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 7.3e-13 77.4 93 44.1
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 9.5e-13 77.0 86 50.0
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 9.5e-13 77.0 95 49.5
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.2e-12 76.6 116 44.8
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 1.2e-12 76.6 89 49.4
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.2e-12 76.6 93 48.4
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.2e-12 76.6 92 47.8
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.2e-12 76.6 92 47.8
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 1.6e-12 76.3 85 49.4
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 2.8e-12 75.5 89 50.6
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 3.6e-12 75.1 86 51.2
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 3.6e-12 75.1 102 48.0
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 4.7e-12 74.7 86 53.5
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 4.7e-12 74.7 88 47.7
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 4.7e-12 74.7 88 48.9
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 4.7e-12 74.7 91 47.3
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 4.7e-12 74.7 98 50.0
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 4.7e-12 74.7 91 51.6
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 6.2e-12 74.3 104 46.2
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 6.2e-12 74.3 107 45.8
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 8.1e-12 73.9 84 51.2
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 8.1e-12 73.9 84 50.0
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.1e-11 73.6 95 48.4
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.1e-11 73.6 86 51.2
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 1.4e-11 73.2 81 48.1
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.4e-11 73.2 109 45.0
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 1.8e-11 72.8 99 43.4
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 1.8e-11 72.8 94 50.0
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 2.3e-11 72.4 91 47.3
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.3e-11 72.4 102 46.1
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.3e-11 72.4 94 44.7
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 3.1e-11 72.0 88 50.0
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 3.1e-11 72.0 100 45.0
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.1e-11 72.0 104 45.2
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 3.1e-11 72.0 88 48.9
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 4.0e-11 71.6 100 46.0
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 4.0e-11 71.6 109 44.0
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 4.0e-11 71.6 107 43.0
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 5.2e-11 71.2 92 46.7
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 6.8e-11 70.9 90 50.0
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 6.8e-11 70.9 88 48.9
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 6.8e-11 70.9 113 46.9
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 8.9e-11 70.5 107 45.8
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 8.9e-11 70.5 116 39.7
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 8.9e-11 70.5 116 39.7
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 1.5e-10 69.7 102 44.1
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.5e-10 69.7 97 45.4
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 2.0e-10 69.3 107 44.9
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 3.4e-10 68.6 85 48.2
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 3.4e-10 68.6 95 46.3
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.4e-10 68.6 93 39.8
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 4.4e-10 68.2 96 42.7
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 4.4e-10 68.2 110 40.9
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 9.9e-10 67.0 107 43.9
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 9.9e-10 67.0 93 39.8
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 1.3e-09 66.6 106 50.9
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 1.3e-09 66.6 101 40.6
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 1.3e-09 66.6 101 40.6
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.3e-09 66.6 110 44.5
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.3e-09 66.6 93 45.2
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 1.7e-09 66.2 101 41.6
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 2.2e-09 65.9 107 43.0
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 2.2e-09 65.9 107 43.0
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 2.2e-09 65.9 107 43.0
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.2e-09 65.9 96 46.9
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 2.2e-09 65.9 102 43.1
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 2.9e-09 65.5 93 43.0
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.9e-09 65.5 98 42.9
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.8e-09 65.1 82 51.2
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.8e-09 65.1 93 50.5
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 8.4e-09 63.9 96 45.8
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 8.4e-09 63.9 101 43.6
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.1e-08 63.5 109 44.0
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 1.1e-08 63.5 88 43.2
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 1.9e-08 62.8 97 43.3
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 2.4e-08 62.4 87 43.7
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 3.2e-08 62.0 106 41.5
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 4.1e-08 61.6 107 43.0
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 5.4e-08 61.2 96 45.8
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 5.4e-08 61.2 94 42.6
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 9.2e-08 60.5 89 44.9
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 9.2e-08 60.5 129 37.2
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 9.2e-08 60.5 108 37.0
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.6e-07 59.7 82 45.1
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.6e-07 59.7 82 45.1
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.6e-07 59.7 82 50.0
Lalb_Chr03g0037101 Lupinus albus HOM05D003940 ORTHO05D004461 2.1e-07 59.3 96 38.5
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.1e-07 59.3 96 44.8
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.7e-07 58.9 93 41.9
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 3.5e-07 58.5 102 38.2
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 3.5e-07 58.5 82 45.1
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.5e-07 58.5 95 44.2
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 4.6e-07 58.2 98 41.8
ATR0680G398 Amborella trichopoda HOM05D003940 ORTHO05D004461 6.0e-07 57.8 95 47.4
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 6.0e-07 57.8 82 45.1
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 6.0e-07 57.8 105 41.9
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 7.8e-07 57.4 93 41.9
HPP92_008406 Vanilla planifolia HOM05D027912 ORTHO05D004461 7.8e-07 57.4 88 44.3
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.7e-06 56.2 108 41.7
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 1.7e-06 56.2 107 35.5
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.7e-06 56.2 79 46.8
HPP92_027996 Vanilla planifolia HOM05D027912 ORTHO05D004461 1.7e-06 56.2 88 43.2
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 2.3e-06 55.8 105 41.9
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 2.3e-06 55.8 100 42.0
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 3.0e-06 55.5 89 41.6
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 3.9e-06 55.1 85 47.1
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 3.9e-06 55.1 85 47.1


User provided reference genes

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