Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 3.9e-42 174.5 93 100.0
Gohir.A04G042801 Gossypium hirsutum HOM05D004570 ORTHO05D005494 4.7e-32 141.0 89 88.8
Lalb_Chr23g0274341 Lupinus albus HOM05D004570 ORTHO05D005494 1.0e-26 123.2 80 85.0
Gohir.A11G230402 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.5e-25 118.6 68 92.6
Gohir.A12G229466 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.5e-25 118.6 68 92.6
Gorai.010G129700 Gossypium raimondii HOM05D004570 ORTHO05D005494 2.5e-25 118.6 68 92.6
RcHm_v2.0_Chr6g0260411 Rosa chinensis HOM05D004570 ORTHO05D005494 9.5e-25 116.7 68 91.2
RcHm_v2.0_CPg0502011 Rosa chinensis HOM05D004570 ORTHO05D005494 9.5e-25 116.7 68 91.2
DCAR_032506 Daucus carota HOM05D004570 ORTHO05D005494 1.2e-24 116.3 68 91.2
PGR111G0035 Punica granatum HOM05D004570 ORTHO05D005494 1.2e-24 116.3 68 91.2
ATCG00650 Arabidopsis thaliana HOM05D004570 ORTHO05D005494 1.6e-24 115.9 82 76.8
C06p22960 Brassica napus HOM05D004570 ORTHO05D005494 1.6e-24 115.9 82 76.8
BolSC29t60597H Brassica oleracea HOM05D004570 ORTHO05D005494 1.6e-24 115.9 82 76.8
BolSC35t60657H Brassica oleracea HOM05D004570 ORTHO05D005494 1.6e-24 115.9 82 76.8
BolSC46t61008H Brassica oleracea HOM05D004570 ORTHO05D005494 1.6e-24 115.9 82 76.8
BolSC47t61087H Brassica oleracea HOM05D004570 ORTHO05D005494 1.6e-24 115.9 82 76.8
BraA06t25415Z Brassica rapa HOM05D004570 ORTHO05D005494 1.6e-24 115.9 82 76.8
BraSC138t45566Z Brassica rapa HOM05D004570 ORTHO05D005494 1.6e-24 115.9 82 76.8
BraSC25t45856Z Brassica rapa HOM05D004570 ORTHO05D005494 1.6e-24 115.9 82 76.8
BraSC58t46431Z Brassica rapa HOM05D004570 ORTHO05D005494 1.6e-24 115.9 82 76.8
CARHR282160 Cardamine hirsuta HOM05D004570 ORTHO05D005494 1.6e-24 115.9 82 76.8
Nn021s41531 Nelumbo nucifera HOM05D004570 ORTHO05D005494 1.6e-24 115.9 68 91.2
Nn3g19985 Nelumbo nucifera HOM05D004570 ORTHO05D005494 1.6e-24 115.9 68 91.2
PSO548G0082 Papaver somniferum HOM05D004570 ORTHO05D005494 1.6e-24 115.9 68 91.2
TAR628G1502 Trochodendron aralioides HOM05D004570 ORTHO05D005494 1.6e-24 115.9 68 91.2
Ciclev10003202m.g Citrus clementina HOM05D004570 ORTHO05D005494 2.1e-24 115.5 68 88.2
Glyma.12G232200 Glycine max HOM05D004570 ORTHO05D005494 2.1e-24 115.5 70 87.1
Gohir.A04G059000 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.1e-24 115.5 68 91.2
AL2G21620 Arabidopsis lyrata HOM05D004570 ORTHO05D005494 2.8e-24 115.2 68 89.7
Lj1g0020553 Lotus japonicus HOM05D004570 ORTHO05D005494 2.8e-24 115.2 68 89.7
LjContig00318g0015790 Lotus japonicus HOM05D004570 ORTHO05D005494 2.8e-24 115.2 68 89.7
Sed0017454 Sechium edule HOM05D004570 ORTHO05D005494 2.8e-24 115.2 68 89.7
C02p28720 Brassica napus HOM05D004570 ORTHO05D005494 4.7e-24 114.4 82 75.6
C06p23030 Brassica napus HOM05D004570 ORTHO05D005494 4.7e-24 114.4 82 75.6
BolC2t08922H Brassica oleracea HOM05D004570 ORTHO05D005494 4.7e-24 114.4 82 75.6
Lalb_Chr07g0192071 Lupinus albus HOM05D004570 ORTHO05D005494 4.7e-24 114.4 68 89.7
MELO3C001309.2 Cucumis melo HOM05D004570 ORTHO05D005494 6.2e-24 114.0 68 89.7
MELO3C028029.2 Cucumis melo HOM05D004570 ORTHO05D005494 6.2e-24 114.0 68 89.7
MELO3C028120.2 Cucumis melo HOM05D004570 ORTHO05D005494 6.2e-24 114.0 68 89.7
Gohir.D06G113675 Gossypium hirsutum HOM05D004570 ORTHO05D005494 6.2e-24 114.0 68 89.7
HanXRQChr01g0004801 Helianthus annuus HOM05D004570 ORTHO05D005494 6.2e-24 114.0 68 88.2
HanXRQChr01g0020301 Helianthus annuus HOM05D004570 ORTHO05D005494 6.2e-24 114.0 68 88.2
HanXRQChr02g0041611 Helianthus annuus HOM05D004570 ORTHO05D005494 6.2e-24 114.0 68 88.2
HanXRQChr02g0044851 Helianthus annuus HOM05D004570 ORTHO05D005494 6.2e-24 114.0 68 88.2
HanXRQChr10g0283601 Helianthus annuus HOM05D004570 ORTHO05D005494 6.2e-24 114.0 68 88.2
HanXRQChr10g0284291 Helianthus annuus HOM05D004570 ORTHO05D005494 6.2e-24 114.0 68 88.2
HanXRQChr10g0289311 Helianthus annuus HOM05D004570 ORTHO05D005494 6.2e-24 114.0 68 88.2
HanXRQChr10g0318151 Helianthus annuus HOM05D004570 ORTHO05D005494 6.2e-24 114.0 68 88.2
HanXRQChr11g0326881 Helianthus annuus HOM05D004570 ORTHO05D005494 6.2e-24 114.0 68 88.2
HanXRQCPg0580091 Helianthus annuus HOM05D004570 ORTHO05D005494 6.2e-24 114.0 68 88.2
HanXRQChr04g0095121 Helianthus annuus HOM05D004570 ORTHO05D005494 8.1e-24 113.6 68 86.8
CAN.G1148.10 Capsicum annuum HOM05D004570 ORTHO05D005494 1.1e-23 113.2 68 88.2
CAN.G1314.4 Capsicum annuum HOM05D004570 ORTHO05D005494 1.1e-23 113.2 68 88.2
CAN.G2018.14 Capsicum annuum HOM05D004570 ORTHO05D005494 1.1e-23 113.2 68 88.2
CAN.G2018.6 Capsicum annuum HOM05D004570 ORTHO05D005494 1.1e-23 113.2 68 88.2
CAN.G3365.4 Capsicum annuum HOM05D004570 ORTHO05D005494 1.1e-23 113.2 68 88.2
CAN.G438.84 Capsicum annuum HOM05D004570 ORTHO05D005494 1.1e-23 113.2 68 88.2
Solyc00g500022.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 1.1e-23 113.2 68 88.2
Sopen07g012410 Solanum pennellii HOM05D004570 ORTHO05D005494 1.1e-23 113.2 68 88.2
PGSC0003DMG400044817 Solanum tuberosum HOM05D004570 ORTHO05D005494 1.1e-23 113.2 68 88.2
PGSC0003DMG400045454 Solanum tuberosum HOM05D004570 ORTHO05D005494 1.1e-23 113.2 68 88.2
PGSC0003DMG401022617 Solanum tuberosum HOM05D004570 ORTHO05D005494 1.1e-23 113.2 68 88.2
Gohir.D12G107900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.4e-23 112.8 68 89.7
Phvul.002G090511 Phaseolus vulgaris HOM05D004570 ORTHO05D005494 1.4e-23 112.8 68 86.8
HanXRQChr04g0094281 Helianthus annuus HOM05D004570 ORTHO05D005494 1.8e-23 112.5 68 86.8
arahy.Tifrunner.gnm1.ann1.0J98KG Arachis hypogaea HOM05D004570 ORTHO05D005494 2.3e-23 112.1 64 92.2
arahy.Tifrunner.gnm1.ann1.JZHZ2W Arachis hypogaea HOM05D004570 ORTHO05D005494 2.3e-23 112.1 64 92.2
BraSC103t45456Z Brassica rapa HOM05D004570 ORTHO05D005494 2.3e-23 112.1 91 73.6
Glyma.15G238900 Glycine max HOM05D004570 ORTHO05D005494 1.2e-22 109.8 68 86.8
CAN.G561.9 Capsicum annuum HOM05D004570 ORTHO05D005494 1.5e-22 109.4 68 83.8
Gorai.001G196600 Gossypium raimondii HOM05D004570 ORTHO05D005494 5.8e-22 107.5 68 85.3
Lj2P1237T61 Lonicera japonica HOM05D004570 ORTHO05D005494 1.7e-21 105.9 75 77.3
Lj2P1239T137 Lonicera japonica HOM05D004570 ORTHO05D005494 1.7e-21 105.9 75 77.3
Gohir.A09G109900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.9e-21 105.1 68 85.3
BolSC49t61173H Brassica oleracea HOM05D004570 ORTHO05D005494 6.4e-21 104.0 82 72.0
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 6.4e-21 104.0 68 82.4
BolC6t36198H Brassica oleracea HOM05D004570 ORTHO05D005494 1.1e-20 103.2 67 83.6
CAN.G1753.2 Capsicum annuum HOM05D004570 ORTHO05D005494 1.0e-18 96.7 68 75.0
Os01g0523401 Oryza sativa ssp. japonica HOM05D004570 ORTHO05D005494 1.0e-18 96.7 62 85.5
Hund04053 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund07983 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund08573 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund08807 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund20237 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund22775 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund27463 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund27482 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund27573 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund27596 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund27877 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund27896 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund27980 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund28050 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund28104 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund28263 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund28454 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund28470 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund28489 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund28514 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund28525 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund28627 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund28673 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund28719 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund28741 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund28753 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund28842 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund28891 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund29139 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund29177 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund29360 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund29465 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund29622 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund29704 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund29708 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund29718 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund29725 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund29808 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund29832 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund29833 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund29856 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund29864 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund29940 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund30026 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund30252 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund30318 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund30479 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund30523 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Hund30577 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.0e-18 96.7 59 86.4
Gohir.A01G178208 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.9e-18 94.7 64 79.7
Zm00001eb435160 Zea mays HOM05D004570 ORTHO05D005494 5.1e-18 94.4 56 89.3
Zm00001eb437170 Zea mays HOM05D004570 ORTHO05D005494 5.1e-18 94.4 56 89.3
Hund15803 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.3e-17 90.5 58 82.8
Eucgr.A00291 Eucalyptus grandis HOM05D004570 ORTHO05D005494 2.1e-16 89.0 53 84.9
Gohir.A01G178244 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.6e-16 88.2 64 75.0
EL10Ac7g17378 Beta vulgaris HOM05D004570 ORTHO05D005494 6.2e-16 87.4 51 88.2
HanXRQChr11g0345201 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-14 82.8 50 82.0
Gohir.D01G101982 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.3e-13 79.7 45 97.8
Lalb_Chr18g0049721 Lupinus albus HOM05D004570 ORTHO05D005494 1.7e-13 79.3 45 97.8
Solyc01g017085.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 2.9e-13 78.6 52 78.8
CSS0008162 Camellia sinensis var. sinensis HOM05D004570 ORTHO05D005494 3.8e-13 78.2 45 95.6
GSVIVG01023557001 Vitis vinifera HOM05D000092 ORTHO05D000042 4.9e-13 77.8 44 97.7
HanXRQChr00c0314g0573531 Helianthus annuus HOM05D004570 ORTHO05D005494 6.4e-13 77.4 45 95.6
HanXRQChr02g0052581 Helianthus annuus HOM05D004570 ORTHO05D005494 6.4e-13 77.4 45 95.6
BNapus_Darmor_BZH_scaffold_287p00190 Brassica napus HOM05D004570 ORTHO05D005494 8.4e-13 77.0 59 74.6
C02p43580 Brassica napus HOM05D004570 ORTHO05D005494 8.4e-13 77.0 59 74.6
BolSC29t60476H Brassica oleracea HOM05D004570 ORTHO05D005494 8.4e-13 77.0 59 74.6
Gorai.013G170400 Gossypium raimondii HOM05D004570 ORTHO05D005494 7.1e-12 73.9 50 76.0
CsaV3_7G024620 Cucumis sativus L. HOM05D004570 ORTHO05D005494 1.2e-11 73.2 47 78.7
arahy.Tifrunner.gnm1.ann1.S91IH0 Arachis hypogaea HOM05D004570 ORTHO05D005494 2.7e-11 72.0 41 85.4
Eucgr.E01044 Eucalyptus grandis HOM05D004570 ORTHO05D005494 3.5e-11 71.6 45 91.1
Lalb_Chr20g0115501 Lupinus albus HOM05D004570 ORTHO05D005494 3.5e-11 71.6 50 76.0
Gorai.001G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 4.6e-11 71.2 45 88.9
Lalb_Chr23g0274801 Lupinus albus HOM05D004570 ORTHO05D005494 1.7e-10 69.3 45 86.7
BolC9t53164H Brassica oleracea HOM05D004570 ORTHO05D005494 3.0e-10 68.6 43 79.1
arahy.Tifrunner.gnm1.ann1.IY5TEH Arachis hypogaea HOM05D011450 ORTHO05D011017 9.6e-09 63.5 46 71.7
BraSC58t46492Z Brassica rapa HOM05D004570 ORTHO05D005494 3.6e-08 61.6 36 83.3
BolC8t52433H Brassica oleracea HOM05D004570 ORTHO05D005494 1.8e-07 59.3 32 87.5
arahy.Tifrunner.gnm1.ann1.RCVY9V Arachis hypogaea HOM05D000540 ORTHO05D000681 2.0e-06 55.8 46 73.9


User provided reference genes

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