Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.2e-155 553.1 282 100.0
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 5.1e-146 521.2 289 93.1
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.1e-145 520.0 289 92.7
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.6e-144 516.2 289 92.0
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 6.2e-128 461.1 289 80.6
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.0e-125 453.8 289 80.3
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 5.3e-103 378.3 243 80.2
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 2.6e-102 375.9 284 68.3
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.7e-101 373.2 204 94.1
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.7e-96 356.7 285 67.7
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 2.4e-95 352.8 288 64.2
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 4.1e-95 352.1 287 67.2
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.2e-94 350.5 287 63.8
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 7.7e-94 347.8 285 66.3
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 2.9e-93 345.9 289 64.4
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 3.8e-93 345.5 287 65.5
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 6.5e-93 344.7 259 68.3
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 6.5e-93 344.7 259 68.7
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.9e-92 343.2 285 63.2
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 3.2e-92 342.4 283 65.0
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 9.4e-92 340.9 284 64.4
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 9.4e-92 340.9 308 61.7
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 2.1e-91 339.7 285 64.2
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.1e-91 339.7 316 60.1
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 3.6e-91 339.0 286 65.7
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 8.0e-91 337.8 288 61.1
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 8.0e-91 337.8 233 73.8
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 8.0e-91 337.8 256 69.9
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.0e-91 337.8 285 64.6
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 8.0e-91 337.8 255 68.6
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 8.0e-91 337.8 284 62.7
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 5.2e-90 335.1 290 61.4
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 6.8e-90 334.7 286 64.7
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 6.8e-90 334.7 255 69.4
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 8.8e-90 334.3 293 63.1
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 8.8e-90 334.3 289 62.3
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 8.8e-90 334.3 271 64.6
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 1.2e-89 334.0 288 62.2
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.5e-89 333.6 289 65.7
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 2.0e-89 333.2 234 72.6
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 2.6e-89 332.8 262 67.9
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 2.6e-89 332.8 285 63.9
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 3.4e-89 332.4 259 66.4
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 3.4e-89 332.4 255 68.6
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.4e-89 332.0 290 63.4
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 5.7e-89 331.6 289 60.9
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.5e-89 331.3 296 62.2
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 9.8e-89 330.9 293 62.5
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 1.7e-88 330.1 271 64.9
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 1.7e-88 330.1 266 66.9
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 2.2e-88 329.7 233 72.5
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 2.2e-88 329.7 286 60.1
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.8e-88 329.3 285 63.2
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 3.7e-88 328.9 268 65.3
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 3.7e-88 328.9 236 71.2
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 3.7e-88 328.9 234 71.8
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.1e-87 327.4 286 60.8
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 1.1e-87 327.4 287 62.7
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.4e-87 327.0 268 64.6
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.8e-87 326.6 286 61.9
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 2.4e-87 326.2 285 62.8
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 2.4e-87 326.2 285 62.8
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 2.4e-87 326.2 285 62.8
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 3.1e-87 325.9 284 61.3
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 3.1e-87 325.9 284 61.3
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.1e-87 325.9 252 68.3
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 4.1e-87 325.5 294 62.2
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 4.1e-87 325.5 287 62.0
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 4.1e-87 325.5 319 57.4
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 7.0e-87 324.7 253 66.0
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 9.1e-87 324.3 284 61.6
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.2e-86 323.9 258 65.1
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 1.2e-86 323.9 241 68.9
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.6e-86 323.6 284 61.3
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 1.6e-86 323.6 253 68.4
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.6e-86 323.6 269 63.9
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.6e-86 323.6 253 68.0
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 2.7e-86 322.8 245 68.6
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 3.5e-86 322.4 273 64.5
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 5.9e-86 321.6 286 62.9
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 5.9e-86 321.6 253 68.0
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.0e-85 320.9 268 63.8
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.2e-85 319.7 261 66.7
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 5.0e-85 318.5 248 68.5
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 6.5e-85 318.2 231 70.1
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.5e-84 317.0 234 70.5
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.5e-84 317.0 261 64.8
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 2.5e-84 316.2 237 69.2
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 2.5e-84 316.2 230 70.9
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 3.2e-84 315.8 253 64.0
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.5e-84 315.1 261 66.3
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.7e-83 312.8 285 60.4
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 8.0e-83 311.2 239 68.6
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 1.0e-82 310.8 290 59.3
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 1.0e-82 310.8 290 59.3
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.0e-82 310.8 242 67.4
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 1.8e-82 310.1 248 64.9
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 2.3e-82 309.7 247 65.6
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 1.5e-81 307.0 223 70.0
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 2.0e-81 306.6 230 69.1
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 2.2e-80 303.1 224 70.5
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 3.7e-80 302.4 235 66.0
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.1e-79 300.8 291 56.7
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 9.1e-79 297.7 304 54.6
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 2.7e-78 296.2 267 59.2
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 5.9e-78 295.0 245 62.9
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 1.7e-77 293.5 260 59.2
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 2.9e-77 292.7 266 58.3
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 2.5e-76 289.7 235 63.8
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 4.2e-76 288.9 260 59.2
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 5.6e-76 288.5 275 57.5
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 2.3e-74 283.1 270 58.1
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.0e-73 280.0 220 65.0
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 2.0e-73 280.0 202 70.3
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 2.6e-73 279.6 230 63.0
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 3.7e-72 275.8 279 55.2
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 2.7e-70 269.6 228 62.7
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 2.9e-69 266.2 201 68.2
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 8.6e-69 264.6 199 69.3
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 2.5e-68 263.1 198 69.2
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 1.2e-67 260.8 200 67.0
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 4.7e-67 258.8 199 68.3
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 6.2e-67 258.5 236 61.4
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 2.0e-65 253.4 228 62.3
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 7.5e-65 251.5 226 60.6
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 7.5e-65 251.5 228 57.0
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.3e-64 250.8 236 58.9
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 8.3e-64 248.1 191 68.1
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.4e-63 247.3 132 93.9
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.4e-63 247.3 132 93.9
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 5.4e-63 245.4 242 57.0
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 1.7e-61 240.4 200 62.5
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.3e-61 240.0 135 91.9
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 1.8e-58 230.3 265 50.6
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.1e-58 229.6 167 71.3
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 4.0e-58 229.2 229 54.6
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 6.8e-58 228.4 233 54.5
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 1.0e-53 214.5 229 51.1
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.1e-52 211.1 161 67.7
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.2e-51 207.6 185 62.7
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 2.9e-48 196.4 148 67.6
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 8.4e-48 194.9 238 45.8
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 4.7e-43 179.1 146 62.3
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 1.3e-40 171.0 177 52.5
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 6.4e-40 168.7 135 64.4
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 4.4e-33 146.0 151 57.6
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.3e-32 144.4 120 65.0
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.2e-31 139.4 97 76.3
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.6e-30 137.5 97 75.3
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 2.1e-30 137.1 124 55.6
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.7e-30 136.7 95 76.8
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 2.7e-30 136.7 97 75.3
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.0e-29 134.8 97 73.2
Gorai.013G170600 Gossypium raimondii HOM05D004185 ORTHO05D047516 2.9e-24 116.7 57 96.5
Gohir.D13G151150 Gossypium hirsutum HOM05D004185 ORTHO05D047516 9.3e-23 111.7 57 91.2
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 6.7e-21 105.5 149 44.3
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 4.8e-19 99.4 72 70.8
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 1.2e-17 94.7 66 72.7
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 2.0e-17 94.0 90 53.3
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 4.9e-16 89.4 64 73.4
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 9.3e-15 85.1 44 95.5
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.6e-14 84.3 198 29.8
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 2.7e-14 83.6 68 64.7
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 4.6e-14 82.8 44 90.9
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 7.9e-14 82.0 70 62.9
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 7.4e-12 75.5 82 48.8
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 9.6e-12 75.1 76 56.6
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 3.1e-10 70.1 46 78.3
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 6.5e-08 62.4 70 50.0


User provided reference genes

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