Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 1.8e-290 1001.9 518 100.0
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.1e-287 992.6 518 99.0
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 6.2e-283 976.9 518 97.7
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 9.7e-236 820.1 548 79.2
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 2.9e-232 808.5 524 81.3
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 1.4e-213 746.5 525 73.7
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 6.6e-184 647.9 551 63.5
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 2.4e-181 639.4 531 64.2
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 2.2e-179 632.9 529 64.7
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 2.1e-174 616.3 531 61.8
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 1.7e-171 606.7 533 61.7
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 2.4e-170 602.8 535 61.1
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 7.9e-169 597.8 530 62.6
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 1.0e-168 597.4 530 62.5
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 1.1e-165 587.4 535 60.7
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 2.0e-164 583.2 530 60.4
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 2.6e-164 582.8 531 58.6
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 7.1e-162 574.7 527 60.0
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 9.3e-162 574.3 532 59.0
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 1.4e-157 560.5 525 58.3
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 3.1e-157 559.3 546 57.1
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 2.9e-155 552.7 529 57.7
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 6.5e-155 551.6 532 58.3
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 1.9e-154 550.1 533 57.0
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 2.5e-154 549.7 505 58.6
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 3.2e-154 549.3 518 58.9
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 5.5e-154 548.5 532 56.6
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 1.2e-153 547.4 535 57.8
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 1.3e-150 537.3 551 55.0
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 8.2e-150 534.6 533 56.5
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 9.0e-149 531.2 525 55.8
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 2.6e-148 529.6 531 56.7
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 9.3e-146 521.2 545 53.4
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 1.2e-145 520.8 531 56.1
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 1.6e-145 520.4 534 55.4
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 4.6e-145 518.8 564 52.7
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 7.9e-145 518.1 538 53.3
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 1.3e-144 517.3 530 54.2
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 1.1e-143 514.2 541 54.2
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 5.7e-143 511.9 535 55.1
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 1.6e-142 510.4 523 53.9
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 2.8e-142 509.6 534 54.1
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.1e-141 506.1 548 53.5
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 3.1e-141 506.1 530 55.3
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.1e-141 505.8 545 53.6
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 1.2e-140 504.2 529 52.4
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.2e-140 504.2 545 53.4
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 1.2e-140 504.2 548 52.0
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 3.4e-140 502.7 531 52.4
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.9e-140 501.9 547 52.8
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.0e-139 501.1 545 53.2
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 1.0e-139 501.1 531 52.9
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 1.7e-139 500.4 533 51.8
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.9e-138 496.9 612 48.5
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.1e-137 493.4 562 51.6
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 7.9e-137 491.5 440 58.6
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 8.8e-136 488.0 529 50.3
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 2.0e-135 486.9 533 50.1
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 9.7e-135 484.6 538 51.5
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 3.7e-134 482.6 501 54.1
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 1.8e-133 480.3 528 51.9
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 9.1e-133 478.0 528 52.3
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 7.7e-132 474.9 533 49.9
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 8.5e-131 471.5 533 49.5
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 1.1e-130 471.1 535 49.0
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 2.7e-129 466.5 533 50.5
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 3.6e-129 466.1 538 49.8
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 1.8e-128 463.8 533 50.3
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 3.9e-128 462.6 533 50.1
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 8.8e-128 461.5 534 48.7
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 2.6e-127 459.9 539 49.7
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 8.2e-126 454.9 536 48.7
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 8.2e-126 454.9 436 56.2
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 1.4e-125 454.1 533 49.0
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 1.8e-125 453.8 482 53.3
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 3.1e-125 453.0 543 49.4
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 5.3e-125 452.2 535 49.0
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 2.6e-124 449.9 534 47.4
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 5.9e-124 448.7 535 48.2
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 7.7e-124 448.4 538 47.2
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 7.7e-124 448.4 677 43.4
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 1.3e-123 447.6 530 50.4
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 1.7e-123 447.2 532 47.6
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 1.7e-123 447.2 532 47.6
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 3.8e-123 446.0 532 47.4
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 3.8e-123 446.0 535 49.0
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 1.5e-122 444.1 530 45.7
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 4.2e-122 442.6 532 46.6
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.2e-121 441.0 533 48.6
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 2.1e-121 440.3 532 47.6
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 2.7e-121 439.9 532 47.6
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 8.0e-121 438.3 533 47.8
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.0e-120 438.0 546 46.2
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 2.3e-120 436.8 529 46.5
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 9.7e-119 431.4 552 46.9
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 4.1e-117 426.0 529 44.4
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 6.5e-115 418.7 530 45.7
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 2.1e-113 413.7 540 45.0
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 2.6e-111 406.8 530 45.8
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 8.3e-110 401.7 420 55.2
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 2.4e-109 400.2 552 45.5
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 1.6e-108 397.5 526 45.2
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 1.0e-107 394.8 526 44.5
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.3e-107 393.7 509 46.2
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 4.0e-104 382.9 533 45.0
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 1.4e-101 374.4 538 43.1
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 4.1e-101 372.9 525 42.7
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 2.3e-99 367.1 384 52.6
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 3.6e-97 359.8 560 40.4
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 7.5e-95 352.1 384 51.3
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 4.9e-94 349.4 560 41.2
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 9.2e-93 345.1 564 38.7
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.5e-90 337.0 466 44.6
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 4.0e-88 329.7 541 42.1
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 5.8e-87 325.9 279 62.4
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 7.0e-85 318.9 528 39.8
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 6.0e-84 315.8 401 47.6
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 2.3e-83 313.9 528 38.4
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 1.4e-80 304.7 332 51.2
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 9.9e-79 298.5 345 49.0
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 6.0e-76 289.3 279 57.7
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 2.4e-72 277.3 356 46.1
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 1.7e-67 261.2 263 54.8
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 3.3e-66 256.9 497 38.0
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.4e-64 251.5 445 38.4
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 3.0e-59 233.8 259 47.5
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 1.6e-57 228.0 220 55.5
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 9.9e-55 218.8 444 34.0
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 6.9e-48 196.1 367 36.5
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 1.0e-43 182.2 143 62.9
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 5.6e-42 176.4 167 53.3
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 6.9e-40 169.5 142 59.2
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 2.1e-36 157.9 330 35.5
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 4.8e-33 146.7 153 49.7
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 8.2e-33 146.0 657 24.0
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 8.2e-33 146.0 148 54.7
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 2.4e-32 144.4 153 48.4
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 1.7e-30 138.3 148 48.6
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 1.1e-29 135.6 218 37.6
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 2.5e-29 134.4 192 40.1
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 2.1e-28 131.3 250 37.2
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 1.9e-26 124.8 175 45.7
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 6.3e-25 119.8 531 24.1
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 2.4e-24 117.9 187 35.8
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 1.1e-21 109.0 141 42.6
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 3.7e-17 94.0 284 29.2
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 8.0e-12 76.3 170 30.6
arahy.Tifrunner.gnm1.ann1.X2DDWJ Arachis hypogaea HOM05D001074 ORTHO05D038832 1.2e-07 62.4 135 34.8
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 2.9e-06 57.8 83 47.0
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 5.0e-06 57.0 98 34.7


User provided reference genes

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