Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 3.0e-55 218.4 120 100.0
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 7.9e-48 193.7 111 95.5
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 1.4e-47 193.0 112 90.2
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 3.9e-47 191.4 112 91.1
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.9e-47 191.4 110 95.5
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.9e-47 191.4 110 95.5
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 3.9e-47 191.4 110 95.5
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 3.9e-47 191.4 110 95.5
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 8.8e-47 190.3 110 94.5
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 8.8e-47 190.3 110 92.7
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 1.1e-46 189.9 110 94.5
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 1.1e-46 189.9 110 91.8
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 1.5e-46 189.5 110 92.7
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 2.0e-46 189.1 110 93.6
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 2.5e-46 188.7 110 93.6
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 2.5e-46 188.7 111 91.0
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 3.3e-46 188.3 110 91.8
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 3.3e-46 188.3 110 93.6
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 4.3e-46 188.0 110 92.7
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 4.3e-46 188.0 110 91.8
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 4.3e-46 188.0 110 93.6
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 4.3e-46 188.0 110 90.9
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 4.3e-46 188.0 111 90.1
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 5.7e-46 187.6 110 90.9
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 7.4e-46 187.2 110 90.9
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 7.4e-46 187.2 110 90.9
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 7.4e-46 187.2 110 90.9
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 7.4e-46 187.2 110 90.0
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 9.7e-46 186.8 110 90.0
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 9.7e-46 186.8 110 90.0
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.3e-45 186.4 110 90.9
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.3e-45 186.4 110 90.9
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.3e-45 186.4 110 90.9
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.8e-45 185.3 110 90.0
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 2.8e-45 185.3 110 90.0
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 3.7e-45 184.9 110 90.0
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 3.7e-45 184.9 110 90.0
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 3.7e-45 184.9 109 90.8
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 3.7e-45 184.9 110 89.1
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 4.8e-45 184.5 110 88.2
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 4.8e-45 184.5 110 90.0
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 6.3e-45 184.1 110 87.3
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 6.3e-45 184.1 110 87.3
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 6.3e-45 184.1 110 89.1
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 6.3e-45 184.1 110 90.0
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 6.3e-45 184.1 110 89.1
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 8.2e-45 183.7 110 89.1
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 8.2e-45 183.7 110 88.2
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 8.2e-45 183.7 110 89.1
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 1.1e-44 183.3 109 91.7
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 1.1e-44 183.3 110 90.0
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 1.1e-44 183.3 110 90.0
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 1.1e-44 183.3 110 90.0
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 1.1e-44 183.3 110 88.2
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 1.4e-44 183.0 110 89.1
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 1.8e-44 182.6 110 89.1
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 1.8e-44 182.6 109 89.0
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 1.8e-44 182.6 109 89.0
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 1.8e-44 182.6 109 89.0
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 1.8e-44 182.6 109 89.0
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 1.8e-44 182.6 110 88.2
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 1.8e-44 182.6 110 88.2
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 1.8e-44 182.6 109 89.0
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 1.8e-44 182.6 110 88.2
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.8e-44 182.6 109 89.9
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 2.4e-44 182.2 110 88.2
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 2.4e-44 182.2 110 88.2
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 2.4e-44 182.2 110 88.2
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 2.4e-44 182.2 109 89.0
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 2.4e-44 182.2 110 88.2
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 3.1e-44 181.8 109 88.1
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 3.1e-44 181.8 109 89.0
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 3.1e-44 181.8 110 89.1
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 3.1e-44 181.8 109 89.0
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 3.1e-44 181.8 110 87.3
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 3.1e-44 181.8 110 90.0
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 3.1e-44 181.8 110 88.2
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 4.1e-44 181.4 110 88.2
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 4.1e-44 181.4 109 88.1
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 5.3e-44 181.0 109 88.1
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 5.3e-44 181.0 109 88.1
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 5.3e-44 181.0 109 88.1
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 5.3e-44 181.0 110 87.3
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 5.3e-44 181.0 110 87.3
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 5.3e-44 181.0 110 87.3
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 5.3e-44 181.0 110 87.3
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 5.3e-44 181.0 110 87.3
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 6.9e-44 180.6 110 87.3
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 6.9e-44 180.6 109 89.0
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 6.9e-44 180.6 109 88.1
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 6.9e-44 180.6 110 88.2
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 9.1e-44 180.3 110 87.3
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 9.1e-44 180.3 110 88.2
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 9.1e-44 180.3 110 88.2
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 9.1e-44 180.3 110 87.3
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 9.1e-44 180.3 110 86.4
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 9.1e-44 180.3 110 86.4
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 9.1e-44 180.3 110 88.2
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 1.2e-43 179.9 109 88.1
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 1.2e-43 179.9 109 88.1
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 1.2e-43 179.9 110 88.2
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 1.5e-43 179.5 110 87.3
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 1.5e-43 179.5 109 88.1
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 1.5e-43 179.5 109 88.1
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 1.5e-43 179.5 110 87.3
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 1.5e-43 179.5 110 85.5
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 2.0e-43 179.1 110 85.5
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 2.0e-43 179.1 110 86.4
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 2.0e-43 179.1 109 88.1
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 2.6e-43 178.7 110 86.4
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 2.6e-43 178.7 109 86.2
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 3.4e-43 178.3 109 86.2
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 4.5e-43 177.9 110 86.4
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 1.0e-42 176.8 110 86.4
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.0e-42 176.8 109 85.3
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 1.3e-42 176.4 110 86.4
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 1.7e-42 176.0 110 85.5
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 1.7e-42 176.0 110 83.6
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 1.7e-42 176.0 110 85.5
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 2.2e-42 175.6 110 84.5
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 6.5e-42 174.1 110 82.7
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 8.5e-42 173.7 104 87.5
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 1.4e-41 172.9 110 84.5
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 4.2e-41 171.4 110 83.6
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.2e-40 169.9 92 98.9
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.4e-39 166.4 109 83.5
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 2.3e-39 165.6 110 80.9
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 1.1e-38 163.3 110 80.9
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 1.8e-36 156.0 111 73.9
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 3.1e-36 155.2 88 94.3
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 1.5e-35 152.9 87 92.0
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.3e-34 149.8 110 72.7
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 2.2e-34 149.1 111 73.9
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 5.0e-34 147.9 94 83.0
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 1.4e-33 146.4 110 77.3
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.8e-31 137.1 110 70.9
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 1.1e-30 136.7 110 71.8
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.7e-29 132.9 84 83.3
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 1.4e-23 113.2 84 73.8
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.5e-17 93.2 63 77.8
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 7.0e-12 74.3 44 95.5
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 4.0e-07 58.5 136 35.3


User provided reference genes

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