Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G026600 Gossypium raimondii HOM05D007804 ORTHO05D009828 5.3e-86 321.2 192 100.0
Gohir.D09G022600 Gossypium hirsutum HOM05D007804 ORTHO05D009828 1.5e-80 303.1 189 95.2
Gohir.A09G023300 Gossypium hirsutum HOM05D007804 ORTHO05D009828 1.3e-79 300.1 192 94.8
Duzib147G0590 Durio zibethinus HOM05D007804 ORTHO05D009828 1.0e-49 200.7 212 61.3
Thecc.04G069800 Theobroma cacao HOM05D007804 ORTHO05D009828 8.5e-36 154.5 191 55.5
COL.COLO4_36996 Corchorus olitorius HOM05D007804 ORTHO05D009828 9.7e-32 141.0 209 50.7
Cfa007487 Carpinus fangiana HOM05D007804 ORTHO05D009828 2.4e-22 109.8 175 42.3
Cpa.g.sc14.66 Carica papaya HOM05D007804 ORTHO05D009828 5.4e-22 108.6 189 43.9
Ciclev10012771m.g Citrus clementina HOM05D007804 ORTHO05D009828 3.8e-20 102.4 199 42.7
CiPaw.03G032600 Carya illinoinensis HOM05D007804 ORTHO05D009828 1.5e-19 100.5 187 44.9
QL02p079311 Quercus lobata HOM05D007804 ORTHO05D009828 1.9e-19 100.1 172 42.4
ClCG09G018550 Citrullus lanatus HOM05D007804 ORTHO05D009828 2.3e-17 93.2 170 48.8
Sed0004613 Sechium edule HOM05D007804 ORTHO05D009828 4.0e-17 92.4 164 47.6
Sed0005835 Sechium edule HOM05D007804 ORTHO05D009828 4.0e-17 92.4 164 47.6
MELO3C021487.2 Cucumis melo HOM05D007804 ORTHO05D009828 1.2e-16 90.9 162 43.8
Manes.15G177500 Manihot esculenta HOM05D007804 ORTHO05D009828 1.2e-16 90.9 166 41.0
THA.LOC104805425 Tarenaya hassleriana HOM05D007804 ORTHO05D009828 2.0e-16 90.1 194 44.8
Glyma.19G017000 Glycine max HOM05D007804 ORTHO05D009828 4.4e-16 89.0 168 48.2
Prupe.3G275600 Prunus persica HOM05D007804 ORTHO05D009828 5.7e-16 88.6 157 43.9
Sed0002452 Sechium edule HOM05D007804 ORTHO05D009828 9.8e-16 87.8 165 49.1
Phvul.004G023300 Phaseolus vulgaris HOM05D007804 ORTHO05D009828 1.3e-15 87.4 163 47.2
Lj2g0027470 Lotus japonicus HOM05D007804 ORTHO05D009828 2.8e-15 86.3 179 43.0
Manes.17G117500 Manihot esculenta HOM05D007804 ORTHO05D009828 2.8e-15 86.3 157 41.4
Aa31LG2G4650 Aethionema arabicum HOM05D007804 ORTHO05D009828 3.7e-15 85.9 183 37.2
Medtr6g009320 Medicago truncatula HOM05D007804 ORTHO05D009828 4.9e-15 85.5 180 40.6
CsaV3_5G037680 Cucumis sativus L. HOM05D007804 ORTHO05D009828 8.3e-15 84.7 163 42.9
TPR.G32605 Trifolium pratense HOM05D007804 ORTHO05D009828 2.4e-14 83.2 184 44.6
VMungo0464G0276 Vigna mungo HOM05D007804 ORTHO05D009828 5.4e-14 82.0 165 42.4
BcaB07g30130 Brassica carinata HOM05D007804 ORTHO05D009828 1.2e-13 80.9 175 37.7
CARHR292560 Cardamine hirsuta HOM05D007804 ORTHO05D009828 1.2e-13 80.9 178 36.5
Glyma.13G067400 Glycine max HOM05D007804 ORTHO05D009828 1.6e-13 80.5 168 45.8
Peaxi162Scf00129g00628 Petunia axillaris HOM05D007804 ORTHO05D009828 2.0e-13 80.1 159 35.8
Nitab4.5_0002265g0080 Nicotiana tabacum HOM05D007804 ORTHO05D009828 4.5e-13 79.0 159 35.8
Psat1g077160 Pisum sativum HOM05D007804 ORTHO05D009828 4.5e-13 79.0 168 44.0
Actinidia02723 Actinidia chinensis HOM05D007804 ORTHO05D009828 5.9e-13 78.6 179 36.3
Nitab4.5_0001239g0070 Nicotiana tabacum HOM05D007804 ORTHO05D009828 5.9e-13 78.6 159 35.8
Atru.chr8.2473 Acer truncatum HOM05D007804 ORTHO05D009828 7.8e-13 78.2 208 41.3
Psat1g077320 Pisum sativum HOM05D007804 ORTHO05D009828 1.0e-12 77.8 162 34.6
RcHm_v2.0_Chr2g0169751 Rosa chinensis HOM05D007804 ORTHO05D009828 1.3e-12 77.4 164 41.5
Lalb_Chr21g0319161 Lupinus albus HOM05D007804 ORTHO05D009828 1.7e-12 77.0 161 44.7
Sopen02g032190 Solanum pennellii HOM05D007804 ORTHO05D009828 2.3e-12 76.6 163 35.0
SGA_v2.0_scaffold135G34801 Striga asiatica HOM05D007804 ORTHO05D009828 2.3e-12 76.6 162 35.2
BcaC06g30917 Brassica carinata HOM05D007804 ORTHO05D009828 2.9e-12 76.3 168 36.9
Thhalv10004896m.g Eutrema salsugineum HOM05D007804 ORTHO05D009828 2.9e-12 76.3 181 34.8
Rhsim08G0063700 Rhododendron simsii HOM05D007804 ORTHO05D009828 3.8e-12 75.9 166 39.2
TWI36G0430 Tripterygium wilfordii HOM05D007804 ORTHO05D009828 6.6e-12 75.1 174 43.1
AT3G28420 Arabidopsis thaliana HOM05D007804 ORTHO05D009828 8.6e-12 74.7 181 34.8
BcaC03g17515 Brassica carinata HOM05D007804 ORTHO05D009828 1.1e-11 74.3 176 35.2
C02p54770 Brassica napus HOM05D007804 ORTHO05D009828 1.1e-11 74.3 176 35.2
BolC2t11538H Brassica oleracea HOM05D007804 ORTHO05D009828 1.1e-11 74.3 176 35.2
Manes.17G120501 Manihot esculenta HOM05D007804 ORTHO05D009828 1.1e-11 74.3 153 37.9
BraA06t26974Z Brassica rapa HOM05D007804 ORTHO05D009828 1.5e-11 73.9 175 35.4
Sp2g17190 Schrenkiella parvula HOM05D007804 ORTHO05D009828 1.5e-11 73.9 180 35.6
CSS0004616 Camellia sinensis var. sinensis HOM05D007804 ORTHO05D009828 1.9e-11 73.6 164 45.1
FAN05G0497 Fragaria x ananassa HOM05D007804 ORTHO05D009828 1.9e-11 73.6 161 39.8
A06p40550 Brassica napus HOM05D007804 ORTHO05D009828 2.5e-11 73.2 175 35.4
Solyc02g087440.4 Solanum lycopersicum HOM05D007804 ORTHO05D009828 2.5e-11 73.2 185 32.4
FvH4_6g49720 Fragaria vesca HOM05D007804 ORTHO05D009828 3.3e-11 72.8 161 39.8
FAN09G3343 Fragaria x ananassa HOM05D007804 ORTHO05D009828 3.3e-11 72.8 161 38.5
FAN14G3729 Fragaria x ananassa HOM05D007804 ORTHO05D009828 3.3e-11 72.8 161 39.8
Lalb_Chr02g0159931 Lupinus albus HOM05D007804 ORTHO05D009828 3.3e-11 72.8 167 44.9
Migut.K01348 Erythranthe guttata HOM05D007804 ORTHO05D009828 7.3e-11 71.6 149 36.2
FAN02G3435 Fragaria x ananassa HOM05D007804 ORTHO05D009828 7.3e-11 71.6 161 38.5
AL5G18030 Arabidopsis lyrata HOM05D007804 ORTHO05D009828 9.5e-11 71.2 187 34.2
A02p35930 Brassica napus HOM05D007804 ORTHO05D009828 9.5e-11 71.2 176 36.9
BraA02t08592Z Brassica rapa HOM05D007804 ORTHO05D009828 9.5e-11 71.2 176 36.9
MSTRG.23968 Avicennia marina HOM05D007804 ORTHO05D009828 1.6e-10 70.5 160 38.1
C07p37470 Brassica napus HOM05D000068 ORTHO05D009828 1.6e-10 70.5 183 33.9
BolC7t44259H Brassica oleracea HOM05D000068 ORTHO05D009828 1.6e-10 70.5 183 33.9
Carub.0005s0691 Capsella rubella HOM05D007804 ORTHO05D009828 2.1e-10 70.1 168 36.3
PGSC0003DMG402001401 Solanum tuberosum HOM05D007804 ORTHO05D009828 6.1e-10 68.6 178 34.3
BcaC06g33740 Brassica carinata HOM05D007804 ORTHO05D009828 1.4e-09 67.4 177 34.5
Oeu027756.1 Olea europaea HOM05D007804 ORTHO05D009828 1.4e-09 67.4 179 35.2
DCAR_011178 Daucus carota HOM05D007804 ORTHO05D009828 1.8e-09 67.0 158 34.8
Nn3g17058 Nelumbo nucifera HOM05D007804 ORTHO05D009828 3.1e-09 66.2 160 35.0
Migut.H00872 Erythranthe guttata HOM05D007804 ORTHO05D009828 4.0e-09 65.9 185 33.0
TAR622G0153 Trochodendron aralioides HOM05D007804 ORTHO05D009828 4.0e-09 65.9 159 34.0
Oeu017303.1 Olea europaea HOM05D007804 ORTHO05D009828 5.2e-09 65.5 156 36.5
CAN.G206.83 Capsicum annuum HOM05D007804 ORTHO05D009828 2.6e-08 63.2 201 31.8
Lsat_1_v5_gn_4_180340 Lactuca sativa HOM05D007804 ORTHO05D009828 7.5e-08 61.6 157 36.3
ECA232G1800 Erigeron canadensis HOM05D007804 ORTHO05D009828 9.8e-08 61.2 158 34.2
Nn4g22964 Nelumbo nucifera HOM05D007804 ORTHO05D009828 1.3e-07 60.8 171 36.3
SalBow1G7839 Salvia bowleyana HOM05D007804 ORTHO05D009828 2.2e-07 60.1 161 31.7
unitig_899.g15501 Utricularia gibba HOM05D007804 ORTHO05D009828 2.4e-06 56.6 153 37.3


User provided reference genes

Program Settings