Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G267300 Gossypium raimondii HOM05D000540 ORTHO05D008105 3.6e-77 291.6 153 100.0
Gohir.D02G238800 Gossypium hirsutum HOM05D000540 ORTHO05D008105 2.3e-76 288.9 153 98.7
Gohir.A03G217200 Gossypium hirsutum HOM05D000540 ORTHO05D008105 5.7e-75 284.3 153 97.4
Thecc.02G009100 Theobroma cacao HOM05D000540 ORTHO05D008105 1.5e-51 206.5 162 73.5
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 9.8e-27 124.0 152 53.3
arahy.Tifrunner.gnm1.ann1.3CPC1Y Arachis hypogaea HOM05D000540 ORTHO05D008105 1.4e-25 120.2 115 60.9
arahy.Tifrunner.gnm1.ann1.WZXK6X Arachis hypogaea HOM05D000540 ORTHO05D008105 5.4e-25 118.2 115 60.0
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 9.2e-25 117.5 85 71.8
Eucgr.D00430 Eucalyptus grandis HOM05D000540 ORTHO05D008105 2.0e-24 116.3 85 72.9
Lalb_Chr10g0097221 Lupinus albus HOM05D000540 ORTHO05D008105 3.5e-24 115.5 88 70.5
Medtr7g106780 Medicago truncatula HOM05D000540 ORTHO05D008105 3.5e-24 115.5 92 67.4
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 4.6e-24 115.2 92 68.5
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 6.0e-24 114.8 87 69.0
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 6.0e-24 114.8 91 67.0
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 6.0e-24 114.8 92 68.5
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 6.0e-24 114.8 83 72.3
VMungo1383G2423 Vigna mungo HOM05D001610 ORTHO05D001585 6.0e-24 114.8 90 68.9
Glyma.05G150000 Glycine max HOM05D000540 ORTHO05D008105 7.8e-24 114.4 92 66.3
Phvul.001G167500 Phaseolus vulgaris HOM05D000540 ORTHO05D008105 7.8e-24 114.4 104 62.5
Ciclev10002977m.g Citrus clementina HOM05D000540 ORTHO05D008105 1.3e-23 113.6 75 72.0
TPR.G25660 Trifolium pratense HOM05D000540 ORTHO05D008105 1.3e-23 113.6 88 69.3
Lj3g0015602 Lotus japonicus HOM05D000540 ORTHO05D008105 2.3e-23 112.8 112 56.2
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 3.0e-23 112.5 83 71.1
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 3.0e-23 112.5 83 71.1
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 3.0e-23 112.5 83 71.1
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 3.0e-23 112.5 83 71.1
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 3.9e-23 112.1 86 67.4
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 5.0e-23 111.7 80 71.2
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 6.6e-23 111.3 77 70.1
Lj2A1229G102 Lonicera japonica HOM05D000540 ORTHO05D000681 6.6e-23 111.3 85 68.2
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 8.6e-23 110.9 83 69.9
Glyma.08G106800 Glycine max HOM05D000540 ORTHO05D008105 8.6e-23 110.9 90 65.6
Medtr5g085270 Medicago truncatula HOM05D000540 ORTHO05D008105 8.6e-23 110.9 88 68.2
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 1.1e-22 110.5 91 68.1
Solyc00g500273.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 1.1e-22 110.5 85 68.2
PGSC0003DMG400021035 Solanum tuberosum HOM05D000540 ORTHO05D008105 1.1e-22 110.5 85 68.2
TPR.G34443 Trifolium pratense HOM05D000540 ORTHO05D008105 1.1e-22 110.5 109 60.6
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.5e-22 110.2 84 67.9
Atru.chr7.1082 Acer truncatum HOM05D000540 ORTHO05D008105 1.9e-22 109.8 88 64.8
Ca_09077_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 1.9e-22 109.8 108 59.3
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 2.5e-22 109.4 85 68.2
Atru.chr1.3246 Acer truncatum HOM05D000540 ORTHO05D008105 4.3e-22 108.6 88 63.6
Nn1g09992 Nelumbo nucifera HOM05D000540 ORTHO05D008105 4.3e-22 108.6 85 68.2
Nn1g10001 Nelumbo nucifera HOM05D000540 ORTHO05D008105 4.3e-22 108.6 85 68.2
Nn1g10092 Nelumbo nucifera HOM05D000540 ORTHO05D008105 4.3e-22 108.6 85 68.2
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 5.6e-22 108.2 91 67.0
Ca_22805_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 5.6e-22 108.2 108 58.3
GSVIVG01038017001 Vitis vinifera HOM05D000540 ORTHO05D008105 5.6e-22 108.2 85 67.1
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 7.3e-22 107.8 90 64.4
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 9.5e-22 107.5 76 73.7
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 9.5e-22 107.5 76 73.7
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 1.2e-21 107.1 76 75.0
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 1.2e-21 107.1 76 75.0
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 1.2e-21 107.1 76 75.0
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 1.2e-21 107.1 76 75.0
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 1.2e-21 107.1 76 75.0
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 1.2e-21 107.1 76 75.0
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 1.2e-21 107.1 76 75.0
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 1.2e-21 107.1 76 75.0
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 1.2e-21 107.1 76 75.0
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 1.2e-21 107.1 76 75.0
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 1.2e-21 107.1 76 75.0
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 1.6e-21 106.7 76 72.4
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 1.6e-21 106.7 76 75.0
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 2.1e-21 106.3 91 62.6
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 2.8e-21 105.9 76 73.7
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 2.8e-21 105.9 76 73.7
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 3.6e-21 105.5 75 74.7
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 3.6e-21 105.5 75 74.7
Rhsim11G0036800 Rhododendron simsii HOM05D000540 ORTHO05D008105 3.6e-21 105.5 103 57.3
Nitab4.5_0009703g0070 Nicotiana tabacum HOM05D000540 ORTHO05D008105 6.2e-21 104.8 85 65.9
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 1.1e-20 104.0 97 56.7
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 1.4e-20 103.6 139 46.8
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 1.8e-20 103.2 75 73.3
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 3.1e-20 102.4 77 70.1
Nitab4.5_0001153g0100 Nicotiana tabacum HOM05D000540 ORTHO05D008105 3.1e-20 102.4 83 61.4
Nitab4.5_0011987g0020 Nicotiana tabacum HOM05D000540 ORTHO05D008105 4.0e-20 102.1 84 65.5
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 4.0e-20 102.1 97 55.7
Sp7g05780 Schrenkiella parvula HOM05D000540 ORTHO05D008105 5.2e-20 101.7 76 72.4
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 5.2e-20 101.7 73 65.8
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 5.2e-20 101.7 73 65.8
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 3.4e-19 99.0 106 57.5
Potri.013G129600 Populus trichocarpa HOM05D000540 ORTHO05D008105 3.4e-19 99.0 89 58.4
Sabra13G0107600 Salix brachista HOM05D000540 ORTHO05D008105 4.4e-19 98.6 89 58.4
Medtr8g466190 Medicago truncatula HOM05D000540 ORTHO05D008105 4.9e-18 95.1 59 76.3
Solyc05g045820.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 5.4e-17 91.7 66 68.2
Solyc05g045760.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 1.7e-15 86.7 76 60.5
Solyc12g035810.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 1.5e-14 83.6 85 56.5
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 3.6e-13 79.0 54 72.2
SMO358G0711 Selaginella moellendorffii HOM05D000540 ORTHO05D008105 4.7e-13 78.6 76 56.6
Mapoly0157s0025 Marchantia polymorpha HOM05D000540 ORTHO05D008105 1.4e-12 77.0 89 51.7
SGA_v2.0_scaffold507G52537 Striga asiatica HOM05D000540 ORTHO05D000681 3.1e-12 75.9 55 69.1
GSVIVG01027360001 Vitis vinifera HOM05D000540 ORTHO05D008105 3.1e-12 75.9 56 64.3
AagrBONN_evm.TU.Sc2ySwM_228.180 Anthoceros agrestis HOM05D000540 ORTHO05D008105 4.4e-11 72.0 68 54.4
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 1.3e-10 70.5 68 52.9
Potri.019G101950 Populus trichocarpa HOM05D000540 ORTHO05D008105 1.7e-10 70.1 42 78.6
Pp3c3_35760 Physcomitrium patens HOM05D024141 ORTHO05D008105 1.4e-09 67.0 64 56.2
ClCG11G008150 Citrullus lanatus HOM05D000540 ORTHO05D008105 2.4e-09 66.2 59 55.9
ClCG00G000520 Citrullus lanatus HOM05D000540 ORTHO05D008105 3.2e-09 65.9 76 47.4
Mapoly0010s0113 Marchantia polymorpha HOM05D024141 ORTHO05D008105 3.2e-09 65.9 59 59.3
Nitab4.5_0000334g0010 Nicotiana tabacum HOM05D000540 ORTHO05D008105 3.2e-09 65.9 55 58.2
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 5.4e-09 65.1 71 50.7
ClCG00G000530 Citrullus lanatus HOM05D000540 ORTHO05D008105 2.1e-08 63.2 83 43.4
SHI38387 Sapria himalayana HOM05D000540 ORTHO05D000681 3.5e-08 62.4 44 63.6
SHI36701 Sapria himalayana HOM05D000540 ORTHO05D008105 4.6e-08 62.0 54 53.7
SHI35194 Sapria himalayana HOM05D000540 ORTHO05D000681 7.8e-08 61.2 53 54.7
SHI50600 Sapria himalayana HOM05D000540 ORTHO05D000681 1.0e-07 60.8 53 54.7
SHI31828 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI34991 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI35858 Sapria himalayana HOM05D000540 ORTHO05D008105 1.3e-07 60.5 53 52.8
SHI37858 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI37906 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI37965 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI38052 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI38194 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI38471 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI38513 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI38589 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI38605 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI38868 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI40568 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI41069 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI43265 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI43312 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI45733 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI50522 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
SHI53542 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-07 60.5 53 52.8
Zm00001eb293400 Zea mays HOM05D042568 ORTHO05D008105 1.3e-07 60.5 78 44.9
SHI37554 Sapria himalayana HOM05D000540 ORTHO05D008105 2.3e-07 59.7 52 51.9
SHI38983 Sapria himalayana HOM05D000540 ORTHO05D008105 2.3e-07 59.7 52 53.8
SHI51026 Sapria himalayana HOM05D000540 ORTHO05D000681 2.3e-07 59.7 53 50.9
SHI41065 Sapria himalayana HOM05D000540 ORTHO05D000681 3.0e-07 59.3 46 60.9
SHI51272 Sapria himalayana HOM05D000540 ORTHO05D000681 3.0e-07 59.3 53 50.9
ECA236G4531 Erigeron canadensis HOM05D000540 ORTHO05D009557 6.6e-07 58.2 97 41.2
SHI27340 Sapria himalayana HOM05D000540 ORTHO05D000681 6.6e-07 58.2 53 52.8
SHI54850 Sapria himalayana HOM05D000540 ORTHO05D008105 6.6e-07 58.2 52 51.9
BcaB03g14613 Brassica carinata HOM05D000142 ORTHO05D000124 8.6e-07 57.8 67 50.7
SHI54942 Sapria himalayana HOM05D000540 ORTHO05D008105 8.6e-07 57.8 53 50.9
HanXRQChr11g0337241 Helianthus annuus HOM05D000540 ORTHO05D009557 1.5e-06 57.0 96 39.6
HanXRQChr15g0494391 Helianthus annuus HOM05D000540 ORTHO05D009557 1.9e-06 56.6 94 41.5
Lsat_1_v5_gn_7_110000 Lactuca sativa HOM05D000540 ORTHO05D009557 2.5e-06 56.2 94 42.6
SHI40340 Sapria himalayana HOM05D000540 ORTHO05D000681 2.5e-06 56.2 53 49.1
SHI37000 Sapria himalayana HOM05D000540 ORTHO05D000681 3.3e-06 55.8 53 47.2
Lsat_1_v5_gn_5_185760 Lactuca sativa HOM05D000540 ORTHO05D009557 4.3e-06 55.5 94 42.6
SHI49875 Sapria himalayana HOM05D000540 ORTHO05D000681 4.3e-06 55.5 53 47.2
SHI53038 Sapria himalayana HOM05D000540 ORTHO05D000681 4.3e-06 55.5 53 47.2
Oeu025653.1 Olea europaea HOM05D000218 ORTHO05D000125 5.6e-06 55.1 80 41.2
SHI37876 Sapria himalayana HOM05D000540 ORTHO05D000681 5.6e-06 55.1 53 50.9
SHI38050 Sapria himalayana HOM05D000540 ORTHO05D000681 5.6e-06 55.1 53 50.9
SHI40214 Sapria himalayana HOM05D000540 ORTHO05D000681 5.6e-06 55.1 43 55.8
MSTRG.19148 Avicennia marina HOM05D000218 ORTHO05D000125 7.3e-06 54.7 90 40.0


User provided reference genes

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