Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 2.7e-65 251.9 131 100.0
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 2.7e-65 251.9 131 100.0
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 2.3e-64 248.8 131 99.2
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 2.2e-59 232.3 131 92.4
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 1.4e-58 229.6 131 90.1
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 4.1e-58 228.0 131 90.8
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 4.1e-58 228.0 129 89.1
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 3.5e-57 224.9 129 86.8
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 3.5e-57 224.9 129 88.4
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 1.0e-56 223.4 129 86.8
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 2.3e-56 222.2 129 86.8
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 3.0e-56 221.9 129 86.0
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 3.0e-56 221.9 131 87.0
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 3.9e-56 221.5 129 85.3
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 6.6e-56 220.7 129 87.6
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 6.6e-56 220.7 130 86.9
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 6.6e-56 220.7 130 88.5
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 6.6e-56 220.7 129 86.8
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 8.6e-56 220.3 129 86.0
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 1.1e-55 219.9 129 86.8
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 1.5e-55 219.5 132 87.1
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 1.9e-55 219.2 131 86.3
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.3e-55 218.4 131 86.3
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 3.3e-55 218.4 129 85.3
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 4.3e-55 218.0 131 84.0
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 4.3e-55 218.0 132 86.4
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 5.6e-55 217.6 131 85.5
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 7.3e-55 217.2 129 86.0
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 9.5e-55 216.9 131 87.8
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 9.5e-55 216.9 131 83.2
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 1.2e-54 216.5 129 85.3
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 1.6e-54 216.1 130 85.4
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 1.6e-54 216.1 130 83.8
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 2.8e-54 215.3 126 85.7
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 2.8e-54 215.3 130 83.8
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.8e-54 215.3 131 83.2
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 3.6e-54 214.9 130 83.8
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 3.6e-54 214.9 131 84.0
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.6e-54 214.9 131 84.0
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 3.6e-54 214.9 131 83.2
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 8.1e-54 213.8 131 83.2
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 8.1e-54 213.8 131 83.2
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 8.1e-54 213.8 130 84.6
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 8.1e-54 213.8 130 83.1
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 8.1e-54 213.8 130 83.1
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 8.1e-54 213.8 129 84.5
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 1.1e-53 213.4 132 85.6
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 1.1e-53 213.4 133 85.7
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 1.1e-53 213.4 129 82.9
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.8e-53 212.6 133 86.5
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 4.0e-53 211.5 130 83.1
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 4.0e-53 211.5 130 83.1
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 5.2e-53 211.1 130 81.5
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 5.2e-53 211.1 130 83.8
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 8.9e-53 210.3 129 80.6
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 8.9e-53 210.3 132 83.3
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 1.2e-52 209.9 129 84.5
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 1.2e-52 209.9 130 83.1
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 1.2e-52 209.9 130 83.1
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 1.2e-52 209.9 130 83.1
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 1.2e-52 209.9 130 83.1
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 1.5e-52 209.5 130 83.1
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 1.5e-52 209.5 129 80.6
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 1.5e-52 209.5 130 83.1
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 2.0e-52 209.1 130 83.1
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 2.0e-52 209.1 130 83.1
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 2.0e-52 209.1 132 82.6
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 2.6e-52 208.8 134 83.6
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 3.4e-52 208.4 130 81.5
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 5.8e-52 207.6 130 82.3
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 5.8e-52 207.6 130 80.8
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 5.8e-52 207.6 133 82.0
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 7.6e-52 207.2 130 80.0
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 9.9e-52 206.8 136 78.7
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.3e-51 206.5 133 83.5
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 1.7e-51 206.1 133 82.7
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 2.2e-51 205.7 133 81.2
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 2.2e-51 205.7 131 82.4
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 2.2e-51 205.7 131 82.4
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 2.2e-51 205.7 131 82.4
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 2.2e-51 205.7 131 82.4
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 2.2e-51 205.7 130 80.8
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 2.2e-51 205.7 130 80.0
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 2.9e-51 205.3 130 80.8
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 2.9e-51 205.3 130 80.0
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 3.7e-51 204.9 131 81.7
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 3.7e-51 204.9 132 81.1
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 3.7e-51 204.9 132 83.3
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 4.9e-51 204.5 132 78.0
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 6.4e-51 204.1 131 81.7
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 6.4e-51 204.1 132 81.1
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 6.4e-51 204.1 130 79.2
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 8.4e-51 203.8 130 82.3
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 8.4e-51 203.8 130 80.8
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 1.4e-50 203.0 131 81.7
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 1.4e-50 203.0 130 80.0
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 1.4e-50 203.0 130 80.0
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 1.9e-50 202.6 130 80.0
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 1.9e-50 202.6 130 79.2
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 5.4e-50 201.1 131 80.2
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 9.2e-50 200.3 131 77.9
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 1.2e-49 199.9 132 79.5
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 2.1e-49 199.1 130 74.6
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 2.7e-49 198.7 130 80.8
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 3.5e-49 198.4 129 77.5
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 4.6e-49 198.0 131 79.4
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 4.6e-49 198.0 130 79.2
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 4.6e-49 198.0 131 77.9
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 1.0e-48 196.8 122 78.7
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 1.0e-48 196.8 130 73.8
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.0e-48 196.8 131 77.1
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 1.7e-48 196.1 130 78.5
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 5.1e-48 194.5 132 79.5
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 8.6e-48 193.7 132 75.8
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 1.1e-47 193.4 130 74.6
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.5e-47 193.0 179 62.0
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 1.9e-47 192.6 129 76.0
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 2.5e-47 192.2 133 78.2
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 5.6e-47 191.0 130 73.8
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 1.6e-46 189.5 129 74.4
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 1.1e-45 186.8 126 77.0
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 3.1e-45 185.3 132 75.8
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 1.2e-44 183.3 161 62.1
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 2.6e-44 182.2 102 88.2
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 9.9e-44 180.3 129 72.9
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 1.3e-43 179.9 130 73.8
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 3.8e-43 178.3 132 72.0
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 3.2e-42 175.3 126 72.2
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 4.6e-41 171.4 130 72.3
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 1.9e-39 166.0 123 69.9
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 4.3e-39 164.9 132 68.2
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 5.6e-39 164.5 133 67.7
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 1.3e-38 163.3 133 66.9
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 5.3e-37 157.9 132 62.9
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 7.6e-36 154.1 131 67.2
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 9.9e-36 153.7 128 68.8
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 3.5e-33 145.2 138 60.9
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 6.6e-32 141.0 132 59.8
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 5.5e-26 121.3 116 58.6
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 1.0e-24 117.1 78 76.9
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 6.9e-21 104.4 67 79.1
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 3.4e-20 102.1 106 53.8
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 2.4e-13 79.3 48 81.2
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 5.1e-08 61.6 78 42.3
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 5.1e-08 61.6 92 39.1


User provided reference genes

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