Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.1e-49 198.7 104 100.0
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 2.1e-49 198.7 104 100.0
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.9e-46 187.6 104 96.2
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 7.6e-39 163.7 104 83.7
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 2.2e-38 162.2 104 84.6
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 9.6e-34 146.7 104 76.9
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 6.5e-30 134.0 104 72.1
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.8e-27 125.9 106 68.9
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 3.0e-27 125.2 105 64.8
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 3.9e-27 124.8 106 65.1
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 6.7e-27 124.0 95 67.4
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 8.7e-27 123.6 105 63.8
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.1e-26 123.2 93 73.1
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.5e-26 122.9 106 66.0
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 4.3e-26 121.3 101 66.3
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 5.7e-26 120.9 105 63.8
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 5.7e-26 120.9 97 67.0
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 7.4e-26 120.6 94 69.1
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.6e-25 119.4 95 66.3
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 2.1e-25 119.0 95 68.4
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 6.2e-25 117.5 94 67.0
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 8.2e-25 117.1 95 68.4
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 8.2e-25 117.1 105 65.7
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.8e-24 115.9 104 57.7
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 1.8e-24 115.9 106 60.4
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.8e-24 115.9 106 60.4
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 5.3e-24 114.4 105 61.0
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 6.9e-24 114.0 106 59.4
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 6.9e-24 114.0 104 58.7
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 1.2e-23 113.2 106 58.5
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 1.5e-23 112.8 106 59.4
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 2.0e-23 112.5 109 61.5
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 2.0e-23 112.5 106 62.3
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.0e-23 112.5 95 65.3
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.6e-23 112.1 93 67.7
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 3.4e-23 111.7 95 63.2
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 4.5e-23 111.3 107 63.6
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.0e-22 110.2 108 62.0
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 1.3e-22 109.8 104 61.5
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.3e-22 109.8 108 61.1
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 1.3e-22 109.8 107 61.7
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 2.2e-22 109.0 93 64.5
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 2.2e-22 109.0 93 64.5
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 2.9e-22 108.6 108 62.0
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 2.9e-22 108.6 105 56.2
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 2.9e-22 108.6 110 60.0
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 5.0e-22 107.8 105 54.3
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 5.0e-22 107.8 105 54.3
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 8.4e-22 107.1 105 60.0
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 1.4e-21 106.3 101 62.4
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 1.4e-21 106.3 106 56.6
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 2.5e-21 105.5 82 74.4
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 2.5e-21 105.5 92 63.0
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 5.5e-21 104.4 121 53.7
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 5.5e-21 104.4 104 54.8
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 9.3e-21 103.6 97 60.8
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.2e-20 103.2 105 59.0
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.2e-20 103.2 103 58.3
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 1.6e-20 102.8 103 57.3
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 3.5e-20 101.7 103 58.3
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 6.1e-20 100.9 77 72.7
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 7.9e-20 100.5 80 67.5
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 1.3e-19 99.8 85 64.7
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 2.3e-19 99.0 104 54.8
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 3.0e-19 98.6 105 58.1
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 3.0e-19 98.6 102 55.9
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.9e-19 98.2 100 56.0
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 3.9e-19 98.2 104 53.8
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 6.7e-19 97.4 81 64.2
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.5e-18 96.3 106 52.8
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.5e-18 96.3 95 58.9
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 1.5e-18 96.3 98 58.2
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 1.9e-18 95.9 98 56.1
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 2.5e-18 95.5 104 54.8
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 2.5e-18 95.5 92 57.6
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 2.5e-18 95.5 97 57.7
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.3e-18 94.7 104 56.7
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 4.3e-18 94.7 104 56.7
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 4.3e-18 94.7 102 51.0
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 5.7e-18 94.4 108 50.9
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 9.7e-18 93.6 105 49.5
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 9.7e-18 93.6 104 56.7
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 1.3e-17 93.2 77 62.3
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.6e-17 92.8 93 50.5
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.6e-17 92.8 101 52.5
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 2.2e-17 92.4 57 82.5
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 2.2e-17 92.4 95 54.7
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 3.7e-17 91.7 85 60.0
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 4.8e-17 91.3 97 57.7
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 4.8e-17 91.3 92 54.3
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 6.3e-17 90.9 95 50.5
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 8.2e-17 90.5 108 49.1
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 1.1e-16 90.1 101 52.5
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 1.8e-16 89.4 101 51.5
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 1.8e-16 89.4 106 50.9
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 4.1e-16 88.2 97 51.5
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 4.1e-16 88.2 94 54.3
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 5.3e-16 87.8 106 48.1
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 6.9e-16 87.4 101 48.5
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 9.0e-16 87.0 93 51.6
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 1.2e-15 86.7 93 51.6
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.2e-15 86.7 104 50.0
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.2e-15 86.7 93 51.6
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 2.0e-15 85.9 89 52.8
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 2.0e-15 85.9 93 50.5
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.6e-15 85.5 98 54.1
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 3.4e-15 85.1 82 59.8
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.4e-15 85.1 97 50.5
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 4.5e-15 84.7 98 53.1
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 4.5e-15 84.7 103 51.5
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 5.9e-15 84.3 84 53.6
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 1.0e-14 83.6 73 60.3
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 1.3e-14 83.2 82 56.1
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 1.7e-14 82.8 99 49.5
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.7e-14 82.8 93 51.6
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 2.2e-14 82.4 101 51.5
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 2.9e-14 82.0 94 56.4
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 2.9e-14 82.0 105 47.6
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 2.9e-14 82.0 107 47.7
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 3.8e-14 81.6 104 50.0
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 5.0e-14 81.3 92 50.0
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 6.5e-14 80.9 103 50.5
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 8.5e-14 80.5 92 50.0
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 8.5e-14 80.5 75 60.0
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 1.1e-13 80.1 86 54.7
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.1e-13 80.1 82 53.7
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 1.9e-13 79.3 92 47.8
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 2.5e-13 79.0 99 49.5
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 3.2e-13 78.6 99 49.5
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 4.2e-13 78.2 106 49.1
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 4.2e-13 78.2 67 61.2
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 4.2e-13 78.2 93 47.3
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 5.5e-13 77.8 87 50.6
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 1.2e-12 76.6 108 43.5
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 2.1e-12 75.9 93 47.3
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 2.7e-12 75.5 54 66.7
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 4.6e-12 74.7 104 45.2
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 4.6e-12 74.7 102 46.1
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 4.6e-12 74.7 104 41.3
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 6.1e-12 74.3 98 48.0
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 1.0e-11 73.6 107 49.5
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 1.0e-11 73.6 53 69.8
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 3.0e-11 72.0 94 48.9
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.9e-11 71.6 91 49.5
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.9e-11 71.6 90 50.0
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 5.1e-11 71.2 76 50.0
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 6.7e-11 70.9 83 50.6
Lsat_1_v5_gn_7_75620 Lactuca sativa HOM05D004289 ORTHO05D233411 8.8e-11 70.5 104 46.2
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 1.1e-10 70.1 78 52.6
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 2.5e-10 68.9 74 51.4
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 9.7e-10 67.0 83 48.2
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 1.3e-09 66.6 98 39.8
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 2.2e-09 65.9 106 43.4
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 3.7e-09 65.1 71 46.5
DCAR_001703 Daucus carota HOM05D004289 ORTHO05D005141 8.2e-09 63.9 104 45.2
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 6.9e-08 60.8 67 50.7
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 8.5e-06 53.9 52 55.8


User provided reference genes

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