Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.6e-59 232.6 125 100.0
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 4.7e-59 231.1 125 99.2
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 5.2e-58 227.6 125 96.0
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.2e-43 179.9 124 82.3
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.7e-43 178.7 124 81.5
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.0e-41 172.6 124 77.4
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 2.6e-41 172.2 126 77.0
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 5.7e-41 171.0 126 77.8
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 1.7e-40 169.5 127 77.2
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 3.7e-40 168.3 126 78.6
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 4.8e-40 167.9 128 73.4
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 7.0e-39 164.1 119 76.5
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 9.1e-39 163.7 127 74.0
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 1.2e-38 163.3 126 76.2
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.2e-38 163.3 125 73.6
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 5.0e-37 157.9 125 74.4
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 6.5e-37 157.5 127 70.9
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 2.5e-36 155.6 123 71.5
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 9.5e-36 153.7 125 74.4
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 2.8e-35 152.1 125 68.8
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 4.7e-35 151.4 125 69.6
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.0e-34 150.2 125 71.2
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 3.0e-34 148.7 127 68.5
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 3.0e-34 148.7 127 68.5
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 3.0e-34 148.7 126 67.5
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 4.0e-34 148.3 125 66.4
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 4.0e-34 148.3 125 68.8
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 6.8e-34 147.5 125 68.8
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 6.8e-34 147.5 126 67.5
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.8e-34 147.5 126 67.5
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 6.8e-34 147.5 121 69.4
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.9e-34 147.1 125 68.8
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.9e-34 147.1 125 68.8
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.2e-33 146.7 126 67.5
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.5e-33 146.4 126 68.3
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.6e-33 145.6 125 68.0
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 4.4e-33 144.8 128 71.1
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 4.4e-33 144.8 122 69.7
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 4.4e-33 144.8 124 68.5
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 5.7e-33 144.4 121 67.8
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 7.5e-33 144.1 128 67.2
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.5e-33 144.1 125 68.0
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.8e-33 143.7 125 66.4
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.7e-32 142.9 125 67.2
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.7e-32 142.9 125 67.2
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 2.2e-32 142.5 126 66.7
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 4.9e-32 141.4 121 66.9
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 4.9e-32 141.4 125 65.6
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.9e-32 141.4 125 65.6
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 4.9e-32 141.4 127 69.3
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 6.3e-32 141.0 130 64.6
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 6.3e-32 141.0 126 65.9
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 6.3e-32 141.0 123 67.5
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 8.3e-32 140.6 104 73.1
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.1e-31 140.2 125 65.6
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.4e-31 139.8 98 78.6
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.8e-31 139.4 129 66.7
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 4.1e-31 138.3 127 64.6
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 4.1e-31 138.3 128 65.6
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 5.4e-31 137.9 123 65.0
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 5.4e-31 137.9 128 64.8
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 1.2e-30 136.7 128 67.2
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.2e-30 136.7 127 65.4
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 2.7e-30 135.6 130 65.4
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 2.7e-30 135.6 128 64.1
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 2.7e-30 135.6 118 66.9
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 4.5e-30 134.8 108 70.4
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 4.5e-30 134.8 125 65.6
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 5.9e-30 134.4 112 65.2
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 5.9e-30 134.4 127 65.4
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 7.8e-30 134.0 125 63.2
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 7.8e-30 134.0 124 63.7
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 1.7e-29 132.9 126 61.9
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 1.7e-29 132.9 128 64.8
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 1.7e-29 132.9 123 62.6
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 1.7e-29 132.9 125 67.2
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 2.3e-29 132.5 124 64.5
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 2.3e-29 132.5 115 67.0
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 2.3e-29 132.5 115 67.0
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 2.9e-29 132.1 124 64.5
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 2.9e-29 132.1 126 65.1
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 3.8e-29 131.7 122 62.3
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 3.8e-29 131.7 130 63.1
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 3.8e-29 131.7 125 64.0
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 5.0e-29 131.3 123 61.8
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 6.6e-29 131.0 94 75.5
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 6.6e-29 131.0 124 63.7
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 6.6e-29 131.0 125 60.0
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 6.6e-29 131.0 126 61.9
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 6.6e-29 131.0 125 60.0
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 8.6e-29 130.6 128 62.5
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 8.6e-29 130.6 128 60.9
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 1.1e-28 130.2 124 58.1
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 1.5e-28 129.8 124 64.5
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 1.5e-28 129.8 129 62.0
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 1.5e-28 129.8 114 64.0
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 1.5e-28 129.8 102 71.6
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 1.9e-28 129.4 115 65.2
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 2.5e-28 129.0 106 72.6
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 2.5e-28 129.0 125 64.8
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 2.5e-28 129.0 125 64.8
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 3.3e-28 128.6 127 59.8
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 5.6e-28 127.9 123 62.6
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 7.3e-28 127.5 125 64.0
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 7.3e-28 127.5 125 64.0
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 7.3e-28 127.5 125 64.0
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 7.3e-28 127.5 128 60.2
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 9.5e-28 127.1 124 61.3
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 9.5e-28 127.1 124 61.3
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 9.5e-28 127.1 129 62.8
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 1.2e-27 126.7 125 60.8
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.2e-27 126.7 128 62.5
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 1.6e-27 126.3 113 63.7
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 2.1e-27 125.9 124 62.9
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 4.7e-27 124.8 132 62.9
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 4.7e-27 124.8 129 60.5
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 4.7e-27 124.8 124 61.3
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 6.1e-27 124.4 130 60.0
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 2.3e-26 122.5 122 59.0
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 2.3e-26 122.5 127 59.8
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 3.0e-26 122.1 127 60.6
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 4.0e-26 121.7 110 64.5
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 4.0e-26 121.7 124 61.3
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 5.2e-26 121.3 126 61.9
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 6.8e-26 120.9 125 59.2
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 6.8e-26 120.9 124 59.7
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 6.8e-26 120.9 128 57.8
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 8.9e-26 120.6 122 58.2
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.5e-25 119.8 102 66.7
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.5e-25 119.8 126 61.9
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 2.6e-25 119.0 126 60.3
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 5.8e-25 117.9 128 58.6
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 5.8e-25 117.9 125 58.4
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.3e-24 116.7 111 64.9
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 1.7e-24 116.3 126 58.7
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 3.7e-24 115.2 130 57.7
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 3.7e-24 115.2 129 57.4
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 1.1e-23 113.6 125 56.0
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 1.9e-23 112.8 125 56.0
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 1.9e-23 112.8 125 56.8
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 7.0e-23 110.9 129 56.6
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 1.2e-22 110.2 126 56.3
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 2.0e-22 109.4 123 54.5
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 6.0e-22 107.8 124 57.3
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 7.8e-22 107.5 130 54.6
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 2.3e-21 105.9 124 55.6
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 1.2e-19 100.1 125 51.2
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 1.6e-19 99.8 128 53.1
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 3.6e-19 98.6 125 52.0
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 9.8e-17 90.5 91 56.0
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 4.9e-16 88.2 115 47.0
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.2e-14 83.6 125 41.6
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 2.1e-14 82.8 49 91.8
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 4.6e-14 81.6 108 51.9
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 6.0e-14 81.3 75 65.3
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 2.3e-13 79.3 124 42.7
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 5.1e-13 78.2 54 81.5
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 2.5e-12 75.9 124 41.1
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 3.6e-11 72.0 110 48.2
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 4.7e-11 71.6 73 60.3
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 1.4e-10 70.1 124 38.7
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 6.8e-10 67.8 71 54.9
Psat3g122680 Pisum sativum HOM05D004388 ORTHO05D005106 7.8e-06 54.3 115 40.9


User provided reference genes

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