Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 9.9e-109 397.1 253 100.0
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 3.3e-104 382.1 253 97.2
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 4.9e-100 368.2 253 89.3
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 5.0e-76 288.5 255 75.3
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 9.4e-75 284.3 226 73.0
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 3.9e-73 278.9 226 71.7
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 5.2e-73 278.5 202 78.2
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 1.2e-61 240.7 231 62.3
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 1.0e-60 237.7 203 68.5
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 4.2e-59 232.3 203 66.5
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 2.7e-58 229.6 211 64.5
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 2.7e-58 229.6 210 65.2
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 1.8e-57 226.9 199 68.3
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 2.3e-57 226.5 210 64.8
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 4.8e-55 218.8 202 62.9
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 6.3e-55 218.4 215 60.5
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.8e-54 216.9 227 59.0
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 3.1e-54 216.1 196 63.8
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 4.1e-54 215.7 215 61.4
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 4.1e-54 215.7 209 64.1
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 4.1e-54 215.7 233 58.8
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 7.0e-54 214.9 202 60.9
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 9.1e-54 214.5 208 62.0
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 2.7e-53 213.0 203 61.6
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 3.5e-53 212.6 194 66.0
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 3.5e-53 212.6 195 62.6
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 4.5e-53 212.2 205 62.4
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 5.9e-53 211.8 204 59.8
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.3e-52 210.7 205 62.9
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 2.9e-52 209.5 205 62.0
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 3.8e-52 209.1 227 57.3
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.1e-51 207.6 202 62.9
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 1.5e-51 207.2 227 55.9
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.5e-51 206.5 195 61.0
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 5.5e-51 205.3 236 55.5
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 7.2e-51 204.9 242 54.5
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 7.2e-51 204.9 194 60.8
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 9.5e-51 204.5 201 63.2
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.2e-50 204.1 195 60.5
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.2e-50 204.1 170 68.2
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.6e-50 203.8 259 62.9
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 2.8e-50 203.0 196 61.2
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 3.6e-50 202.6 202 61.4
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 4.7e-50 202.2 202 58.9
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 1.8e-49 200.3 200 57.5
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 3.0e-49 199.5 228 55.3
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 6.8e-49 198.4 211 58.8
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 6.8e-49 198.4 202 56.9
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.5e-48 197.2 194 59.3
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 2.6e-48 196.4 251 51.4
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 2.6e-48 196.4 206 55.8
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 4.4e-48 195.7 205 59.5
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 7.5e-48 194.9 209 56.5
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 7.5e-48 194.9 184 60.3
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 9.8e-48 194.5 212 55.2
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 1.3e-47 194.1 229 55.0
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.7e-47 193.7 209 57.4
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 2.8e-47 193.0 205 55.6
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 3.7e-47 192.6 272 46.7
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 1.1e-46 191.0 198 58.6
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 1.4e-46 190.7 203 56.2
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 1.4e-46 190.7 246 50.8
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 1.4e-46 190.7 210 59.0
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 1.8e-46 190.3 207 58.0
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 2.4e-46 189.9 203 59.6
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.4e-46 189.9 235 52.3
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 2.4e-46 189.9 206 56.3
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 3.1e-46 189.5 207 57.5
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 4.1e-46 189.1 206 56.8
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 5.4e-46 188.7 259 49.4
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 9.2e-46 188.0 240 50.0
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 1.6e-45 187.2 207 57.0
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 2.0e-45 186.8 151 75.5
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 2.0e-45 186.8 259 49.0
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 2.0e-45 186.8 259 49.0
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.3e-44 184.1 227 58.6
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 3.8e-44 182.6 201 55.7
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 3.8e-44 182.6 200 56.5
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 6.6e-44 181.8 171 62.6
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 1.1e-43 181.0 150 72.0
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 1.5e-43 180.6 225 51.1
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 3.3e-43 179.5 211 54.5
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 4.3e-43 179.1 213 50.7
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 5.6e-43 178.7 202 53.5
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 9.5e-43 177.9 205 53.2
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 1.2e-42 177.6 181 59.1
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 1.6e-42 177.2 171 62.0
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 2.1e-42 176.8 198 54.0
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 4.7e-42 175.6 150 68.7
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 8.0e-42 174.9 268 47.4
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 8.0e-42 174.9 277 45.1
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 8.9e-41 171.4 239 48.5
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 8.9e-41 171.4 252 48.8
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.0e-40 170.2 211 50.7
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.6e-40 169.9 170 57.6
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 5.8e-40 168.7 202 51.0
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 3.7e-39 166.0 200 52.0
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 4.9e-39 165.6 252 46.4
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 8.3e-39 164.9 206 49.0
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-38 164.1 197 50.3
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 1.4e-38 164.1 197 51.3
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 2.4e-38 163.3 199 53.8
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 2.4e-38 163.3 204 54.9
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 4.1e-38 162.5 254 46.5
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 7.0e-38 161.8 201 53.2
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 7.0e-38 161.8 201 53.2
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 9.2e-38 161.4 203 49.3
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 2.0e-37 160.2 176 55.1
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 4.6e-37 159.1 231 46.3
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 2.3e-36 156.8 198 52.0
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 3.3e-35 152.9 216 48.6
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 9.5e-35 151.4 206 47.1
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.6e-34 150.6 204 49.0
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 1.1e-33 147.9 171 50.9
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 8.9e-33 144.8 199 49.2
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 7.5e-32 141.7 245 42.4
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 9.8e-32 141.4 198 44.4
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.7e-31 140.6 168 51.2
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 9.2e-30 134.8 207 47.8
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 1.2e-29 134.4 207 44.4
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 4.6e-29 132.5 151 52.3
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 2.3e-28 130.2 169 49.7
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 3.9e-28 129.4 143 57.3
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 3.3e-27 126.3 120 60.8
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 1.6e-26 124.0 235 38.7
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 1.6e-26 124.0 235 38.7
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.1e-25 121.3 230 40.0
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 3.1e-25 119.8 182 45.1
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 3.1e-25 119.8 182 45.1
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 4.0e-25 119.4 184 46.7
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 6.8e-25 118.6 111 63.1
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 2.6e-24 116.7 199 38.7
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.3e-23 114.4 140 55.0
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 4.1e-22 109.4 86 66.3
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 4.1e-22 109.4 186 43.5
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 1.2e-21 107.8 169 45.0
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 2.7e-21 106.7 151 49.0
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 1.0e-20 104.8 180 42.2
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 1.0e-20 104.8 139 50.4
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 6.6e-20 102.1 73 68.5
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 2.5e-19 100.1 159 45.9
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 5.6e-19 99.0 186 40.9
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 5.6e-19 99.0 145 46.9
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 7.3e-19 98.6 147 46.3
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 3.1e-17 93.2 63 71.4
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 3.1e-17 93.2 63 71.4
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 3.1e-17 93.2 63 71.4
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 3.1e-17 93.2 63 71.4
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 3.1e-17 93.2 181 38.1
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-16 90.9 60 73.3
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 2.0e-16 90.5 56 78.6
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 2.0e-16 90.5 58 74.1
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 4.4e-16 89.4 138 47.1
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 5.8e-16 89.0 56 76.8
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 5.8e-16 89.0 56 76.8
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 2.2e-15 87.0 170 43.5
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 4.9e-15 85.9 51 80.4
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 2.4e-14 83.6 170 42.9
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 5.4e-14 82.4 54 74.1
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 5.4e-14 82.4 133 42.9
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.2e-13 81.3 51 78.4
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 8.7e-12 75.1 74 58.1
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-11 72.8 46 73.9
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 4.3e-11 72.8 46 73.9
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.6e-10 70.9 90 50.0
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 3.6e-10 69.7 76 59.2
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 4.7e-10 69.3 122 43.4
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 6.9e-09 65.5 133 41.4
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 5.8e-08 62.4 79 49.4
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 4.9e-07 59.3 38 71.1
CBR_g21766 Chara braunii HOM05D003513 ORTHO05D004660 1.4e-06 57.8 117 32.5
Atru.chr8.1462 Acer truncatum HOM05D002718 ORTHO05D003269 3.2e-06 56.6 46 63.0
MCO09G316 Micromonas commoda HOM05D003513 ORTHO05D004660 4.2e-06 56.2 175 29.1


User provided reference genes

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