Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 4.5e-161 571.2 297 100.0
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.9e-160 568.5 297 98.0
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.1e-154 548.5 297 95.6
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 7.3e-119 431.0 297 78.5
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 2.2e-115 419.5 297 76.8
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 6.2e-110 401.4 297 72.7
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 6.2e-110 401.4 297 72.7
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.8e-109 399.8 288 75.0
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.7e-107 393.3 297 71.0
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 3.2e-106 389.0 297 71.7
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 1.6e-78 297.0 291 59.5
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 4.5e-76 288.9 303 57.1
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 1.9e-74 283.5 303 56.8
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 9.3e-74 281.2 299 55.5
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.6e-73 280.4 299 56.9
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 4.6e-73 278.9 297 55.6
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.8e-72 276.9 284 57.0
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 2.3e-72 276.6 266 60.5
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 5.1e-72 275.4 296 55.7
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 8.7e-72 274.6 268 59.7
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 4.8e-70 268.9 299 56.5
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 6.3e-70 268.5 287 56.4
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.2e-68 264.2 279 57.7
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 4.5e-68 262.3 286 55.2
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.3e-67 260.8 300 55.3
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 2.2e-67 260.0 298 54.7
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 1.9e-66 256.9 298 54.4
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 5.5e-66 255.4 302 53.3
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 7.2e-66 255.0 296 52.0
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 7.9e-65 251.5 278 55.4
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 7.9e-65 251.5 283 55.8
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 4.3e-63 245.7 299 52.8
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 9.7e-63 244.6 295 50.5
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 2.8e-62 243.0 305 52.8
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 8.2e-62 241.5 269 55.4
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 2.6e-60 236.5 255 56.9
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 2.2e-59 233.4 297 49.8
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.4e-58 230.7 288 51.4
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.1e-57 226.9 266 51.9
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 2.7e-57 226.5 295 48.1
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 3.6e-57 226.1 299 51.2
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 3.9e-56 222.6 304 49.7
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.5e-55 220.7 294 48.3
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 7.4e-55 218.4 302 47.0
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 1.7e-54 217.2 293 46.8
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 2.8e-54 216.5 291 46.7
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.8e-53 213.8 299 49.8
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.4e-53 213.4 292 48.3
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 5.3e-53 212.2 292 47.3
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 3.8e-51 206.1 302 50.3
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 5.0e-51 205.7 275 51.6
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 6.1e-49 198.7 280 49.6
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 6.7e-48 195.3 282 44.3
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 2.2e-46 190.3 268 48.5
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 1.8e-45 187.2 266 46.6
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.4e-45 186.8 285 44.2
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 5.3e-45 185.7 294 46.3
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 9.1e-45 184.9 259 49.0
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.5e-44 183.0 257 47.5
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 8.5e-43 178.3 219 53.4
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 8.0e-41 171.8 224 50.0
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.8e-38 163.3 275 42.9
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 3.7e-38 162.9 287 42.9
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 8.3e-38 161.8 291 41.9
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 1.4e-37 161.0 244 45.5
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.7e-36 156.8 297 39.1
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 2.7e-36 156.8 278 41.4
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.5e-36 156.4 302 41.7
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 7.7e-36 155.2 282 42.2
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 1.3e-35 154.5 287 41.8
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.3e-35 154.5 294 39.5
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.8e-35 152.9 268 41.8
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 3.8e-35 152.9 291 40.9
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.5e-34 151.0 291 40.5
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 9.4e-34 148.3 314 39.8
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.6e-33 147.5 209 45.5
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 4.7e-33 146.0 301 41.2
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.5e-31 141.0 145 57.9
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 3.4e-31 139.8 241 42.3
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 2.2e-30 137.1 144 56.9
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.2e-30 137.1 144 56.9
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.2e-30 137.1 144 56.9
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.1e-29 134.8 144 55.6
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 1.1e-29 134.8 279 37.6
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.4e-29 134.4 144 54.9
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.6e-28 131.0 265 39.6
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 5.9e-28 129.0 294 37.4
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.3e-27 127.9 278 36.0
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 3.8e-27 126.3 193 46.6
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.9e-26 124.0 286 40.2
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.9e-26 124.0 283 36.4
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 7.2e-26 122.1 295 32.9
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 9.5e-26 121.7 238 40.3
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.6e-25 120.9 290 36.2
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.6e-25 119.8 298 33.9
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.0e-24 118.2 180 45.0
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.0e-24 118.2 113 59.3
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 2.3e-24 117.1 264 36.0
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 2.6e-23 113.6 293 33.8
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 9.8e-23 111.7 283 36.0
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 2.8e-22 110.2 263 36.5
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 4.9e-22 109.4 270 35.2
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 4.9e-22 109.4 302 30.8
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 8.3e-22 108.6 279 33.7
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 1.8e-21 107.5 302 33.8
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 3.2e-21 106.7 297 31.3
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 4.1e-21 106.3 301 30.6
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 5.4e-21 105.9 286 33.9
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 2.7e-20 103.6 231 37.7
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 7.8e-20 102.1 82 64.6
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 2.9e-19 100.1 81 64.2
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 3.9e-19 99.8 236 34.7
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.9e-19 99.8 279 34.1
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 6.6e-19 99.0 261 33.3
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 8.6e-19 98.6 156 43.6
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.1e-18 98.2 136 41.9
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 2.5e-18 97.1 107 52.3
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.3e-18 96.7 278 32.4
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 4.3e-18 96.3 280 31.4
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 4.3e-18 96.3 243 34.2
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 4.3e-18 96.3 261 33.7
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 1.2e-17 94.7 277 32.9
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 2.8e-17 93.6 260 32.3
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 6.1e-17 92.4 265 35.1
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 8.0e-17 92.0 288 31.6
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.8e-16 90.9 280 32.9
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 3.1e-16 90.1 160 37.5
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 5.2e-16 89.4 270 30.4
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 6.8e-16 89.0 285 31.2
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 2.6e-15 87.0 77 62.3
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 4.4e-15 86.3 119 47.9
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 7.5e-15 85.5 77 61.0
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 2.2e-14 84.0 153 40.5
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 4.9e-14 82.8 370 26.5
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 4.9e-14 82.8 273 29.7
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 6.4e-14 82.4 123 44.7
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 8.3e-14 82.0 81 59.3
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 1.1e-13 81.6 77 58.4
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.4e-13 80.5 118 42.4
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 2.0e-12 77.4 273 30.0
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 6.0e-12 75.9 178 34.8
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 3.0e-11 73.6 156 39.1
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 6.6e-11 72.4 79 49.4
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 8.6e-11 72.0 78 50.0
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 8.6e-11 72.0 232 31.9
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.1e-10 71.6 248 31.5
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.3e-10 70.1 270 30.4
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 3.3e-10 70.1 259 28.2
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 3.3e-10 70.1 230 32.2
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.3e-10 69.7 269 30.9
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 7.3e-10 68.9 56 64.3
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 1.6e-09 67.8 277 29.2
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.8e-09 67.0 264 28.4
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 4.7e-09 66.2 182 29.7
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 6.2e-09 65.9 103 38.8
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 8.0e-09 65.5 118 37.3
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.1e-08 65.1 232 31.0
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 1.1e-08 65.1 89 42.7
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.4e-08 64.7 254 32.3
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 3.1e-08 63.5 148 33.8
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 4.0e-08 63.2 65 50.8
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 5.2e-08 62.8 68 50.0
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.5e-07 61.2 255 28.2
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.5e-07 61.2 208 33.2
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 4.4e-07 59.7 68 44.1
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 7.5e-07 58.9 280 25.7
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.9e-06 57.0 277 25.3
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 3.7e-06 56.6 84 38.1
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 4.9e-06 56.2 85 42.4


User provided reference genes

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