Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.6e-263 912.1 454 100.0
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.4e-262 908.3 454 99.6
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.6e-261 904.8 454 99.1
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 2.0e-248 862.1 454 93.8
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 2.4e-246 855.1 454 92.5
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 5.3e-246 854.0 454 93.0
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 7.0e-230 800.4 456 87.5
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.7e-229 798.5 456 87.3
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 6.5e-228 793.9 456 87.1
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 8.8e-225 783.5 455 84.2
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 6.6e-220 767.3 456 82.9
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 1.9e-219 765.8 454 82.8
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 3.6e-218 761.5 457 81.8
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 3.6e-218 761.5 456 82.7
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 4.7e-218 761.1 454 83.0
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 1.4e-217 759.6 456 81.8
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 2.6e-216 755.4 457 81.2
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 7.5e-216 753.8 457 81.4
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 2.9e-215 751.9 456 81.4
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 1.4e-214 749.6 457 80.5
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 1.8e-214 749.2 455 80.7
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 4.1e-214 748.0 457 80.7
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.2e-213 746.5 455 81.3
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 2.7e-213 745.3 445 80.9
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 2.7e-213 745.3 457 80.1
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 3.0e-212 741.9 436 82.8
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 6.6e-212 740.7 455 80.4
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.9e-211 739.2 456 80.3
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 2.5e-211 738.8 456 80.0
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 2.5e-211 738.8 456 80.0
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 9.5e-211 736.9 456 79.6
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 4.7e-210 734.6 457 79.9
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 3.1e-209 731.9 446 80.0
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 3.1e-209 731.9 460 78.7
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.0e-209 731.5 454 80.2
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 6.8e-209 730.7 454 79.7
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 6.8e-209 730.7 443 80.6
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 8.9e-209 730.3 456 78.9
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.2e-208 729.9 454 80.0
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.5e-208 729.6 456 78.7
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 7.5e-208 727.2 457 79.9
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 2.2e-207 725.7 421 83.4
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 2.2e-207 725.7 453 80.1
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 4.9e-207 724.5 456 77.6
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.4e-206 723.0 454 78.6
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 2.4e-206 722.2 454 78.9
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 3.2e-206 721.8 452 78.5
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 7.0e-206 720.7 447 78.1
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 1.2e-205 719.9 435 81.1
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 1.2e-205 719.9 452 78.1
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 2.0e-205 719.2 456 78.3
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 2.0e-205 719.2 424 82.1
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 2.7e-205 718.8 447 78.5
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 3.5e-205 718.4 458 77.9
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 4.6e-205 718.0 450 78.0
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 4.6e-205 718.0 450 78.0
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 6.0e-205 717.6 454 76.9
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 7.8e-205 717.2 443 79.2
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 1.0e-204 716.8 450 77.8
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 1.0e-204 716.8 450 77.8
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 1.3e-204 716.5 444 78.8
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.3e-204 716.5 443 78.8
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.3e-204 716.5 460 77.2
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 1.7e-204 716.1 450 77.8
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 2.3e-204 715.7 444 78.4
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 1.1e-203 713.4 456 76.5
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.9e-203 712.6 441 78.0
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.9e-203 712.6 441 78.0
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 2.5e-203 712.2 454 77.5
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 7.3e-203 710.7 448 78.3
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 7.3e-203 710.7 456 76.8
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 9.5e-203 710.3 457 77.2
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 2.8e-202 708.8 438 78.8
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 3.6e-202 708.4 454 77.5
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 4.7e-202 708.0 456 75.2
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 4.7e-202 708.0 458 78.4
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 2.3e-201 705.7 442 80.8
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 4.0e-201 704.9 430 80.9
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 2.4e-198 695.7 428 79.0
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 2.4e-198 695.7 455 76.7
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 4.1e-198 694.9 477 73.0
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 1.0e-196 690.3 422 79.6
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.3e-196 689.9 457 76.4
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 3.9e-196 688.3 433 78.3
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 1.1e-195 686.8 457 74.6
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 1.5e-195 686.4 446 76.5
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 3.3e-195 685.3 457 73.7
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 5.6e-195 684.5 455 74.7
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 3.6e-194 681.8 470 74.3
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 6.2e-194 681.0 470 73.8
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 6.2e-194 681.0 470 73.8
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 1.1e-193 680.2 470 73.4
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 2.6e-192 675.6 470 73.0
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 2.6e-192 675.6 470 72.6
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 7.6e-192 674.1 470 73.0
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 1.3e-191 673.3 470 72.6
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 8.4e-191 670.6 445 75.7
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 1.1e-190 670.2 473 72.5
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 1.2e-189 666.8 454 74.4
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.6e-189 666.4 457 72.6
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.1e-187 660.2 456 72.4
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 1.1e-185 653.7 421 75.5
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 1.5e-184 649.8 566 61.3
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.4e-182 643.3 424 74.5
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 1.2e-181 640.2 434 72.1
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.6e-181 639.8 458 71.0
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.7e-181 639.0 447 71.8
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 3.3e-179 632.1 466 68.7
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 2.1e-178 629.4 361 82.5
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 4.8e-178 628.2 456 69.5
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 1.2e-176 623.6 454 68.3
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 9.9e-176 620.5 454 68.7
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 1.7e-175 619.8 439 70.6
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 2.4e-174 615.9 454 67.6
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 9.3e-174 614.0 424 72.2
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 6.7e-172 607.8 431 69.4
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 2.0e-168 596.3 426 70.2
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 3.0e-164 582.4 456 67.3
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.7e-164 581.3 447 65.5
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.4e-161 573.5 372 75.5
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.4e-161 573.5 407 68.8
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 5.5e-158 561.6 363 76.0
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 2.2e-151 539.7 398 70.4
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 1.9e-147 526.6 456 59.0
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 2.0e-144 516.5 339 73.2
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.0e-143 514.2 351 73.2
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 5.5e-142 508.4 449 59.7
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 4.7e-141 505.4 457 57.5
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 1.1e-139 500.7 467 56.3
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 3.3e-139 499.2 431 59.9
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 7.4e-139 498.0 407 61.4
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 1.4e-134 483.8 318 73.3
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 8.0e-125 451.4 394 60.2
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.1e-113 414.5 296 69.3
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 4.0e-108 396.0 336 61.6
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 2.3e-92 343.6 255 67.5
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 6.8e-92 342.0 209 80.4
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 5.8e-91 339.0 231 71.9
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 2.4e-89 333.6 208 80.8
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 1.0e-79 301.6 428 43.0
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 1.5e-75 287.7 197 74.6
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 8.1e-69 265.4 178 77.5
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 4.8e-53 213.0 166 67.5
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 4.9e-50 203.0 136 74.3
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 4.6e-40 169.9 227 46.7
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 1.5e-35 154.8 150 54.0
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 3.2e-33 147.1 149 55.0
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 2.6e-22 110.9 60 90.0
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 6.3e-13 79.7 56 66.1
MBI19_g01037_MAGBIO Magnolia biondii HOM05D016648 ORTHO05D004199 5.7e-06 56.6 88 40.9


User provided reference genes

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