Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 7.4e-218 760.4 418 100.0
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 4.8e-217 757.7 418 99.5
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 5.0e-206 721.1 418 94.5
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 4.4e-178 628.2 419 83.8
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 5.2e-171 604.7 420 81.4
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 4.0e-163 578.6 372 83.1
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 5.2e-163 578.2 416 79.1
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 5.7e-162 574.7 416 78.8
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 6.4e-161 571.2 416 78.8
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 1.5e-149 533.5 431 72.9
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 1.6e-116 423.7 434 62.0
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 1.1e-115 421.0 418 61.7
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 1.1e-112 411.0 426 60.3
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 1.4e-112 410.6 422 60.0
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 4.2e-112 409.1 426 60.1
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 7.9e-111 404.8 421 59.4
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 7.9e-111 404.8 384 58.3
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 3.0e-110 402.9 419 59.2
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 8.7e-110 401.4 423 60.3
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 1.5e-109 400.6 411 60.6
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 9.6e-109 397.9 414 61.4
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 1.6e-108 397.1 431 58.2
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 1.4e-107 394.0 390 59.5
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 1.4e-107 394.0 416 58.4
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 1.8e-107 393.7 407 60.4
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 1.8e-107 393.7 422 61.6
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 4.0e-107 392.5 422 57.1
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 5.3e-107 392.1 422 61.6
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 9.0e-107 391.3 421 58.7
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 1.1e-104 384.4 432 56.0
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 3.2e-104 382.9 413 59.3
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 7.1e-104 381.7 423 58.9
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 1.8e-102 377.1 417 57.6
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 8.7e-102 374.8 448 52.7
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 4.3e-101 372.5 416 57.5
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 9.7e-101 371.3 366 57.7
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 9.7e-101 371.3 421 56.8
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 9.7e-101 371.3 450 52.0
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 4.8e-100 369.0 413 56.2
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 1.5e-98 364.0 419 56.3
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 3.8e-97 359.4 419 56.8
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 1.1e-96 357.8 418 57.4
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 1.4e-96 357.5 464 52.8
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 2.5e-96 356.7 341 58.9
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 6.1e-95 352.1 413 56.2
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 3.0e-94 349.7 464 51.9
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 2.5e-93 346.7 465 52.5
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 5.7e-93 345.5 346 61.3
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 1.3e-92 344.4 419 55.4
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 1.2e-90 337.8 525 47.6
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 2.6e-90 336.7 418 54.8
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 1.0e-89 334.7 434 50.0
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 1.3e-89 334.3 419 54.4
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 6.5e-89 332.0 420 54.8
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 1.1e-88 331.3 420 54.8
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 2.5e-88 330.1 383 51.4
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 4.2e-88 329.3 424 53.3
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 3.0e-86 323.2 312 58.7
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 2.8e-84 316.6 424 51.2
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 4.8e-84 315.8 404 52.5
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 1.8e-83 313.9 372 51.9
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 9.1e-83 311.6 324 57.7
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 2.0e-82 310.5 369 51.8
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 2.6e-82 310.1 375 55.5
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 5.9e-82 308.9 347 55.0
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 2.5e-80 303.5 253 67.2
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 1.0e-78 298.1 253 64.8
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 1.8e-78 297.4 414 50.2
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 3.9e-78 296.2 409 46.9
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 5.7e-77 292.4 405 48.4
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 5.7e-77 292.4 419 50.6
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 2.8e-76 290.0 420 49.3
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 1.8e-75 287.3 442 46.4
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 9.1e-75 285.0 420 47.6
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 2.0e-74 283.9 269 56.1
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 2.6e-74 283.5 431 49.4
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 2.6e-74 283.5 442 44.1
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 1.9e-72 277.3 388 51.3
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.8e-70 270.8 417 49.2
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 5.7e-69 265.8 422 47.9
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 7.5e-69 265.4 420 48.6
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 9.7e-69 265.0 398 48.0
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 4.8e-68 262.7 422 44.8
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 9.1e-67 258.5 418 45.9
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 9.1e-67 258.5 418 45.9
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 1.2e-66 258.1 418 48.1
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 2.0e-66 257.3 418 45.0
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 2.7e-66 256.9 424 46.5
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 1.7e-65 254.2 407 47.7
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 2.2e-65 253.8 296 50.7
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 3.8e-65 253.1 266 54.1
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 1.5e-64 251.1 417 47.2
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 1.9e-64 250.8 232 60.3
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 9.4e-64 248.4 239 58.6
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 1.6e-63 247.7 366 46.4
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 2.1e-63 247.3 318 49.4
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 4.7e-63 246.1 285 56.5
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 6.1e-63 245.7 428 45.3
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 1.0e-62 245.0 421 44.2
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.5e-61 241.1 417 46.0
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 3.4e-61 240.0 406 45.6
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 1.4e-59 234.6 335 50.1
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 2.4e-59 233.8 392 45.9
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 2.7e-58 230.3 423 43.5
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 5.9e-58 229.2 420 45.5
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 1.5e-56 224.6 236 55.5
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 1.2e-55 221.5 423 44.4
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 2.1e-55 220.7 402 42.5
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 6.1e-55 219.2 420 43.6
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 1.8e-54 217.6 414 42.3
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 2.3e-54 217.2 397 42.8
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 4.0e-54 216.5 423 43.5
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 9.2e-51 205.3 227 51.5
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 6.8e-46 189.1 375 38.7
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.7e-42 177.2 428 41.4
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 4.6e-42 176.4 227 42.7
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 1.7e-41 174.5 260 44.2
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 8.0e-39 165.6 258 41.9
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 2.6e-37 160.6 362 35.9
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 4.9e-36 156.4 319 37.9
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 5.2e-30 136.3 149 53.7
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.3e-24 117.1 388 36.1
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 3.3e-24 117.1 85 69.4
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 1.5e-21 108.2 211 44.1
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 7.8e-18 95.9 213 39.9
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 1.0e-17 95.5 144 46.5
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 8.1e-15 85.9 91 58.2
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 1.1e-14 85.5 146 47.9
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 1.2e-13 82.0 170 40.6
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 5.8e-13 79.7 103 46.6
CDE10G1193 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 2.9e-12 77.4 81 55.6
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 7.1e-11 72.8 241 25.3
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 9.3e-11 72.4 140 35.7
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 5.6e-08 63.2 140 33.6
BolC7t41892H Brassica oleracea HOM05D004981 ORTHO05D042093 7.3e-08 62.8 70 50.0
Lsat_1_v5_gn_5_14961 Lactuca sativa HOM05D004981 ORTHO05D005635 2.1e-07 61.2 195 39.5
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 1.4e-06 58.5 65 47.7
Cre04.g221350 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 3.1e-06 57.4 107 39.3
BcaC05g24776 Brassica carinata HOM05D004981 ORTHO05D005635 4.0e-06 57.0 50 52.0
CDE10G0753 Ceratophyllum demersum HOM05D000867 ORTHO05D000864 5.3e-06 56.6 84 41.7


User provided reference genes

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