Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 1.0e-171 606.7 313 100.0
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.7e-166 589.3 313 97.1
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.6e-148 529.6 321 89.4
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 5.2e-115 418.3 313 72.5
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 3.1e-96 355.9 315 65.7
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 1.2e-95 354.0 314 65.6
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 5.0e-94 348.6 312 65.1
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.1e-59 234.6 230 59.6
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 1.3e-36 157.9 331 38.7
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 1.6e-36 157.5 266 41.7
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 7.6e-34 148.7 354 38.7
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 2.2e-33 147.1 290 39.0
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 1.1e-32 144.8 300 38.0
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 1.2e-31 141.4 300 36.7
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 2.1e-31 140.6 284 40.5
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 1.9e-29 134.0 298 35.2
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 3.3e-29 133.3 287 34.8
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 1.6e-28 131.0 287 35.9
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 1.1e-27 128.3 252 35.7
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 5.3e-27 125.9 295 39.0
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 9.0e-27 125.2 325 35.7
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 2.0e-26 124.0 335 36.1
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 1.7e-25 120.9 337 34.1
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 2.9e-25 120.2 279 34.4
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 8.4e-25 118.6 265 34.3
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 2.5e-24 117.1 298 34.2
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 5.5e-24 115.9 293 34.8
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 6.1e-23 112.5 255 34.9
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 1.1e-21 108.2 284 33.1
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 1.1e-21 108.2 219 36.5
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 4.3e-21 106.3 315 30.8
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 5.7e-21 105.9 252 33.7
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 7.4e-21 105.5 282 33.7
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 1.6e-20 104.4 329 31.9
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 4.8e-20 102.8 254 31.1
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 6.3e-20 102.4 256 32.8
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 3.1e-19 100.1 293 32.1
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 3.1e-19 100.1 288 35.4
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 6.9e-19 99.0 344 32.8
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 2.6e-18 97.1 287 32.4
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 2.6e-18 97.1 191 40.3
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 3.4e-18 96.7 333 29.7
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 1.7e-17 94.4 336 27.7
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 2.2e-17 94.0 293 31.1
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 6.5e-17 92.4 309 31.7
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 8.5e-17 92.0 284 31.7
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 3.2e-16 90.1 319 29.2
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 4.2e-16 89.7 326 31.9
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 7.2e-16 89.0 280 29.3
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 2.1e-15 87.4 285 30.5
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 2.1e-15 87.4 273 29.3
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 3.6e-15 86.7 149 40.9
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 6.1e-15 85.9 256 35.5
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 1.0e-14 85.1 319 28.8
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 1.8e-14 84.3 315 30.8
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 3.9e-14 83.2 303 29.0
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 3.9e-14 83.2 129 48.8
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 6.7e-14 82.4 280 28.6
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 1.1e-13 81.6 262 31.7
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 1.5e-13 81.3 333 29.1
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 3.3e-13 80.1 152 40.1
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 1.8e-11 74.3 310 29.4
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 5.3e-11 72.8 172 39.0
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 3.4e-10 70.1 310 28.4
SGA_v2.0_scaffold332G48944 Striga asiatica HOM05D007421 ORTHO05D009203 2.2e-09 67.4 379 27.7
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 2.5e-08 63.9 281 28.1
Pp3c2_17030 Physcomitrium patens HOM05D002710 ORTHO05D002905 2.5e-08 63.9 34 67.6
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 2.5e-08 63.9 32 75.0
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 2.5e-08 63.9 32 75.0
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 7.2e-08 62.4 69 44.9
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 1.2e-07 61.6 198 29.3
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 1.2e-07 61.6 297 29.0
MCO11G228 Micromonas commoda HOM05D002710 ORTHO05D002905 1.6e-07 61.2 32 68.8
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 1.6e-07 61.2 293 28.7
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 2.7e-07 60.5 270 30.4
Hma1.2p1_0012F.1_g007610 Hydrangea macrophylla HOM05D007421 ORTHO05D009203 3.6e-07 60.1 56 55.4
AagrBONN_evm.TU.Sc2ySwM_368.2304 Anthoceros agrestis HOM05D002710 ORTHO05D002905 6.1e-07 59.3 80 37.5
Migut.B00638 Erythranthe guttata HOM05D007421 ORTHO05D009203 7.9e-07 58.9 179 32.4
Lalb_Chr12g0208511 Lupinus albus HOM05D007421 ORTHO05D009203 1.8e-06 57.8 53 49.1
Pp3c1_21370 Physcomitrium patens HOM05D002710 ORTHO05D002905 2.3e-06 57.4 102 36.3
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 3.9e-06 56.6 313 28.1
QL01p003296 Quercus lobata HOM05D002710 ORTHO05D002905 6.7e-06 55.8 34 61.8
QL01p003323 Quercus lobata HOM05D002710 ORTHO05D002905 6.7e-06 55.8 34 61.8
QL01p003332 Quercus lobata HOM05D002710 ORTHO05D002905 6.7e-06 55.8 34 61.8
MD16G1035800 Malus domestica HOM05D002710 ORTHO05D002905 8.8e-06 55.5 34 61.8


User provided reference genes

Program Settings