Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 7.2e-177 624.0 364 100.0
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.5e-174 616.3 364 98.9
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 6.3e-173 610.9 364 97.8
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 5.2e-159 564.7 365 85.2
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 1.8e-156 556.2 364 82.4
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 2.4e-132 476.1 366 72.7
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 5.1e-130 468.4 368 71.5
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 3.6e-128 462.2 369 70.2
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 2.3e-127 459.5 369 68.8
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 5.2e-127 458.4 369 70.2
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 2.6e-126 456.1 362 69.3
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 2.9e-125 452.6 366 69.9
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 8.3e-125 451.1 366 69.4
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 1.1e-124 450.7 376 67.0
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.4e-124 449.5 366 69.9
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 7.1e-124 448.0 351 70.4
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 7.1e-124 448.0 373 68.4
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 2.1e-123 446.4 368 68.5
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 6.0e-123 444.9 369 68.0
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 6.0e-123 444.9 370 67.8
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 1.3e-122 443.7 368 67.9
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 1.3e-122 443.7 368 67.9
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 3.0e-122 442.6 366 68.0
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 3.9e-122 442.2 372 67.5
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 6.6e-122 441.4 368 67.1
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 8.6e-122 441.0 368 67.1
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 1.1e-121 440.7 366 68.6
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 1.1e-121 440.7 366 68.6
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 1.5e-121 440.3 366 67.5
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 2.5e-121 439.5 368 67.4
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 7.3e-121 438.0 366 68.0
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 7.3e-121 438.0 305 76.1
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 7.3e-121 438.0 304 77.0
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 7.3e-121 438.0 371 66.8
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 9.5e-121 437.6 370 67.0
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 1.2e-120 437.2 368 67.9
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 1.2e-120 437.2 366 68.0
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 1.2e-120 437.2 366 68.0
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 1.6e-120 436.8 364 67.6
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 2.1e-120 436.4 371 66.6
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.8e-120 436.0 370 67.8
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 3.6e-120 435.6 374 66.0
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 3.6e-120 435.6 372 66.7
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 3.6e-120 435.6 372 66.7
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 3.6e-120 435.6 370 67.6
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 4.7e-120 435.3 376 66.0
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 6.2e-120 434.9 364 67.3
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.4e-119 433.7 365 67.4
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 5.2e-119 431.8 305 75.1
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 6.8e-119 431.4 366 66.7
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 2.0e-118 429.9 302 75.5
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 2.6e-118 429.5 365 66.0
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 3.4e-118 429.1 364 65.9
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 4.4e-118 428.7 302 75.5
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 4.4e-118 428.7 370 66.8
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 5.8e-118 428.3 302 75.2
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.6e-118 427.9 363 68.0
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 9.9e-118 427.6 376 64.6
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 9.9e-118 427.6 345 68.7
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 9.9e-118 427.6 361 65.4
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.2e-117 426.4 367 67.3
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 2.9e-117 426.0 375 65.6
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 1.4e-116 423.7 302 75.5
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.4e-116 422.9 359 66.6
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 3.2e-116 422.5 304 73.7
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 3.2e-116 422.5 298 74.8
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 5.4e-116 421.8 299 75.3
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 7.1e-116 421.4 298 74.5
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 1.6e-115 420.2 298 76.5
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 1.6e-115 420.2 304 75.3
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 2.1e-115 419.9 299 76.3
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 2.7e-115 419.5 299 76.3
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 2.7e-115 419.5 368 64.7
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 3.5e-115 419.1 305 72.5
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 6.0e-115 418.3 304 73.4
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 6.0e-115 418.3 302 74.5
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 7.8e-115 417.9 374 67.4
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 1.0e-114 417.5 302 74.2
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 1.3e-114 417.2 298 73.5
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 1.7e-114 416.8 304 74.0
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.7e-114 416.8 307 73.0
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.7e-114 416.8 375 65.3
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.7e-114 416.8 304 74.0
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 3.0e-114 416.0 372 63.7
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 6.6e-114 414.8 304 73.0
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.1e-113 414.1 381 63.0
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 4.3e-113 412.1 306 71.6
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 5.6e-113 411.8 301 74.1
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.3e-112 410.6 351 65.0
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 2.1e-112 409.8 371 64.7
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 4.8e-112 408.7 300 74.0
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 6.2e-112 408.3 368 65.5
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 8.1e-112 407.9 374 61.8
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 1.4e-111 407.1 302 73.5
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 4.0e-111 405.6 295 73.6
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 6.9e-111 404.8 301 73.1
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 1.5e-110 403.7 304 73.4
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 5.8e-110 401.7 301 71.8
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.7e-109 400.2 301 72.1
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 1.7e-109 400.2 304 72.0
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.4e-108 397.1 289 74.0
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 2.4e-108 396.4 299 72.2
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 3.2e-108 396.0 304 65.1
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 9.3e-108 394.4 290 72.8
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 9.3e-108 394.4 305 70.8
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 1.2e-107 394.0 367 61.3
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 2.1e-107 393.3 367 61.0
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 2.1e-107 393.3 303 69.6
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 6.0e-107 391.7 303 69.3
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 7.8e-107 391.3 305 69.8
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 1.3e-106 390.6 365 62.2
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 3.3e-105 386.0 287 72.5
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 8.1e-104 381.3 302 69.5
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 2.0e-102 376.7 304 72.0
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 4.9e-101 372.1 374 59.4
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 1.9e-100 370.2 305 68.2
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 2.4e-100 369.8 299 69.6
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 4.8e-96 355.5 281 70.1
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 4.0e-95 352.4 247 76.9
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 4.9e-93 345.5 303 63.0
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 8.4e-93 344.7 241 77.6
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 6.0e-91 338.6 206 80.6
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 1.8e-90 337.0 371 55.8
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-89 334.0 291 67.0
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 4.3e-89 332.4 299 62.5
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 2.8e-88 329.7 299 61.2
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 8.2e-88 328.2 307 60.6
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 4.3e-81 305.8 301 58.5
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.3e-80 304.3 291 56.7
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 4.5e-78 295.8 220 75.5
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 5.9e-78 295.4 315 54.9
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.2e-70 271.2 302 54.3
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 2.5e-68 263.5 299 55.2
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 3.5e-62 243.0 299 53.2
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 4.7e-59 232.6 209 60.8
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 6.1e-59 232.3 218 56.9
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.6e-54 217.6 230 52.6
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 3.7e-48 196.4 130 75.4
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 3.2e-44 183.3 165 56.4
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 8.8e-42 175.3 164 61.6
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 9.2e-31 138.7 142 53.5
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 9.2e-31 138.7 90 74.4
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 2.0e-25 120.9 78 78.2
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 7.5e-25 119.0 128 52.3
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 5.6e-20 102.8 82 62.2
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 2.8e-19 100.5 105 54.3
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-18 98.6 66 72.7
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 2.1e-14 84.3 72 59.7
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 2.5e-12 77.4 178 35.4
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 9.5e-12 75.5 68 58.8
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 1.6e-11 74.7 141 40.4
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 3.6e-11 73.6 59 55.9
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 6.2e-11 72.8 56 67.9
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 1.1e-10 72.0 186 33.3
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 3.1e-10 70.5 63 61.9
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 5.2e-10 69.7 56 66.1
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.5e-09 68.2 67 55.2
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.1e-07 62.0 76 64.5
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.4e-07 61.6 48 62.5
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 2.4e-07 60.8 69 47.8
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 3.2e-07 60.5 63 55.6
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 7.1e-07 59.3 73 45.2
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 9.2e-07 58.9 79 41.8
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 1.2e-06 58.5 43 65.1
Ca_29028_v3 Cicer arietinum L. HOM05D020748 ORTHO05D028602 3.5e-06 57.0 128 29.7


User provided reference genes

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