Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 3.9e-90 334.7 161 100.0
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.9e-89 332.4 161 99.4
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.0e-87 326.6 161 97.5
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 9.9e-70 266.9 161 81.4
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 1.7e-69 266.2 161 82.0
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 1.9e-68 262.7 161 82.0
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 2.1e-64 249.2 155 77.4
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.6e-62 242.3 163 76.7
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 2.9e-61 238.8 163 76.1
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 1.9e-60 236.1 153 73.2
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 9.3e-60 233.8 159 73.6
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.7e-58 229.6 159 69.2
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 1.5e-57 226.5 159 69.8
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 3.3e-57 225.3 167 69.5
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.1e-55 220.3 164 62.8
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 1.4e-55 219.9 153 69.9
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 1.4e-55 219.9 159 68.6
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.8e-55 219.5 160 71.2
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 4.5e-54 214.9 164 62.8
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 9.9e-54 213.8 153 69.3
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 2.2e-53 212.6 151 66.9
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 4.9e-53 211.5 158 64.6
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 6.4e-53 211.1 159 67.9
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 6.4e-53 211.1 126 80.2
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.1e-52 210.3 164 61.6
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 4.2e-52 208.4 161 68.9
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 1.6e-51 206.5 159 68.6
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 1.8e-50 203.0 157 66.9
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 3.9e-50 201.8 151 63.6
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 2.5e-49 199.1 159 60.4
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 2.5e-49 199.1 159 60.4
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 7.4e-49 197.6 161 60.2
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 2.1e-48 196.1 144 61.8
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 1.1e-47 193.7 157 64.3
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 4.0e-47 191.8 148 65.5
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.2e-46 190.3 158 62.0
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 1.2e-46 190.3 180 57.2
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 4.5e-46 188.3 148 64.2
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 5.8e-46 188.0 158 61.4
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 1.7e-45 186.4 159 62.3
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 2.9e-45 185.7 150 64.0
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 3.8e-45 185.3 145 58.6
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 6.4e-45 184.5 130 70.0
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 8.4e-45 184.1 161 57.8
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 1.4e-44 183.3 153 57.5
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 3.2e-44 182.2 170 57.1
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 5.5e-44 181.4 161 56.5
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 9.3e-44 180.6 169 58.6
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.2e-43 180.3 124 68.5
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.2e-43 180.3 141 64.5
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 2.1e-43 179.5 161 56.5
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 2.1e-43 179.5 143 60.1
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 2.7e-43 179.1 145 60.0
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 2.7e-43 179.1 160 56.2
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.8e-42 176.4 168 60.7
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 1.1e-41 173.7 165 53.9
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 1.1e-41 173.7 171 53.8
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 1.5e-41 173.3 171 53.8
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 1.9e-41 172.9 157 57.3
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 4.3e-41 171.8 164 59.1
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 5.6e-41 171.4 153 55.6
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 6.2e-40 167.9 153 56.9
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 1.4e-39 166.8 153 58.2
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 4.5e-38 161.8 162 53.7
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 5.8e-38 161.4 140 58.6
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.3e-37 160.2 154 53.9
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 2.9e-37 159.1 149 54.4
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 1.4e-36 156.8 136 57.4
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 1.4e-36 156.8 89 73.0
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 2.5e-36 156.0 154 57.8
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.6e-35 153.3 164 45.7
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 1.0e-34 150.6 137 54.0
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 1.0e-34 150.6 131 57.3
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 3.9e-34 148.7 103 67.0
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.9e-33 146.4 150 56.0
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 4.3e-33 145.2 147 53.1
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 5.7e-33 144.8 149 50.3
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 9.7e-33 144.1 139 56.8
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.3e-32 143.7 140 52.1
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 1.3e-32 143.7 159 46.5
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 1.3e-32 143.7 159 46.5
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.6e-32 143.3 146 52.7
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 1.6e-32 143.3 158 50.6
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 2.2e-32 142.9 165 45.5
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 4.8e-32 141.7 137 51.8
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 8.2e-32 141.0 145 51.0
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 1.8e-31 139.8 141 53.9
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 4.1e-31 138.7 148 48.6
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 4.1e-31 138.7 134 53.0
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 6.9e-31 137.9 145 49.7
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 6.9e-31 137.9 145 49.7
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 1.2e-30 137.1 146 50.7
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 1.2e-30 137.1 128 52.3
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 1.5e-30 136.7 122 58.2
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 2.6e-30 136.0 148 49.3
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 2.6e-30 136.0 148 49.3
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 3.4e-30 135.6 155 49.7
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 3.4e-30 135.6 148 52.7
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 4.5e-30 135.2 146 50.0
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 4.5e-30 135.2 138 52.2
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 5.9e-30 134.8 148 48.6
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 7.6e-30 134.4 146 49.3
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 2.9e-29 132.5 139 54.0
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 6.5e-29 131.3 138 51.4
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.9e-28 129.8 139 54.0
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 3.2e-28 129.0 155 44.5
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 4.2e-28 128.6 89 66.3
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 4.6e-27 125.2 127 45.7
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 3.0e-26 122.5 161 44.7
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 2.5e-25 119.4 119 55.5
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 3.3e-25 119.0 136 50.0
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 9.7e-25 117.5 148 45.3
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 1.3e-24 117.1 79 60.8
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 8.2e-24 114.4 103 54.4
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 3.1e-23 112.5 141 48.2
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 6.9e-23 111.3 146 47.3
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.0e-22 109.8 154 43.5
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 5.0e-21 105.1 91 54.9
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 1.1e-20 104.0 133 49.6
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.4e-20 103.6 166 37.3
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 2.5e-20 102.8 145 44.8
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 3.2e-20 102.4 133 48.9
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 3.2e-20 102.4 133 48.9
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 3.2e-20 102.4 133 48.9
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 4.2e-20 102.1 133 48.1
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 5.5e-20 101.7 144 45.1
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 7.2e-20 101.3 72 68.1
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 2.7e-19 99.4 135 45.2
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 4.7e-19 98.6 132 45.5
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 3.0e-18 95.9 145 44.1
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 7.4e-17 91.3 109 45.9
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 2.2e-16 89.7 136 41.9
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 2.2e-16 89.7 139 41.0
Zm00001eb035190 Zea mays HOM05D005114 ORTHO05D006301 3.7e-16 89.0 144 36.8
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 1.8e-15 86.7 53 64.2
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 2.4e-15 86.3 152 33.6
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 4.1e-15 85.5 144 42.4
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 5.3e-15 85.1 131 40.5
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 1.9e-12 76.6 85 54.1
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 3.2e-12 75.9 59 64.4
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 3.2e-12 75.9 58 63.8
SEGI_30505 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 4.7e-11 72.0 83 38.6
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 5.2e-10 68.6 93 44.1
Zm00001eb199930 Zea mays HOM05D005114 ORTHO05D006301 3.3e-09 65.9 134 30.6
SEGI_39678 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 5.7e-09 65.1 84 41.7
SEGI_36834 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 4.1e-07 58.9 84 35.7


User provided reference genes

Program Settings