Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 4.8e-80 301.2 162 100.0
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 4.8e-80 301.2 162 100.0
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 7.6e-78 293.9 162 96.9
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 1.0e-53 213.8 163 73.0
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 1.7e-53 213.0 161 72.0
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 5.0e-53 211.5 158 73.4
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 6.3e-40 167.9 163 61.3
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 3.1e-39 165.6 163 60.7
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.0e-38 162.9 163 60.1
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 8.8e-34 147.5 123 62.6
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 1.7e-32 143.3 82 82.9
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 3.7e-32 142.1 128 60.2
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 1.1e-31 140.6 123 58.5
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 1.8e-31 139.8 81 80.2
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 5.3e-31 138.3 115 65.2
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 7.0e-31 137.9 160 51.9
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 7.0e-31 137.9 95 69.5
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 9.1e-31 137.5 171 52.0
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 2.0e-30 136.3 80 77.5
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 2.6e-30 136.0 105 69.5
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 2.6e-30 136.0 80 78.8
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 2.6e-30 136.0 151 55.6
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 3.5e-30 135.6 120 60.0
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 1.0e-29 134.0 170 50.0
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.0e-29 134.0 161 53.4
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 1.0e-29 134.0 172 50.0
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 1.3e-29 133.7 90 67.8
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 1.7e-29 133.3 126 61.9
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 2.9e-29 132.5 152 48.0
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 2.9e-29 132.5 108 57.4
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 3.8e-29 132.1 96 66.7
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 5.0e-29 131.7 85 71.8
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 5.0e-29 131.7 116 60.3
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 6.5e-29 131.3 100 65.0
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 1.1e-28 130.6 134 54.5
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 1.1e-28 130.6 98 68.4
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 1.1e-28 130.6 98 68.4
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 1.1e-28 130.6 79 77.2
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 1.1e-28 130.6 116 57.8
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 1.5e-28 130.2 80 75.0
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.9e-28 129.8 79 77.2
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 2.5e-28 129.4 160 48.8
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 3.2e-28 129.0 79 74.7
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 3.2e-28 129.0 90 68.9
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 3.2e-28 129.0 120 56.7
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 4.2e-28 128.6 163 52.1
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 4.2e-28 128.6 142 51.4
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 4.2e-28 128.6 159 50.3
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 4.2e-28 128.6 73 83.6
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 5.5e-28 128.3 115 57.4
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 5.5e-28 128.3 162 50.0
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 5.5e-28 128.3 161 49.7
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 7.2e-28 127.9 156 48.1
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 1.6e-27 126.7 159 53.5
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 1.6e-27 126.7 162 50.6
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 1.6e-27 126.7 158 50.6
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.6e-27 126.7 90 67.8
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.6e-27 126.7 90 67.8
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 1.6e-27 126.7 82 74.4
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 1.6e-27 126.7 78 73.1
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 2.1e-27 126.3 163 48.5
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 4.7e-27 125.2 87 69.0
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 4.7e-27 125.2 104 65.4
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 6.1e-27 124.8 147 49.7
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 8.0e-27 124.4 79 72.2
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 8.0e-27 124.4 162 50.6
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 8.0e-27 124.4 152 46.1
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 1.0e-26 124.0 136 51.5
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 1.4e-26 123.6 78 74.4
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 1.4e-26 123.6 78 74.4
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 1.4e-26 123.6 116 54.3
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 1.8e-26 123.2 78 74.4
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 1.8e-26 123.2 84 64.3
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 2.3e-26 122.9 84 64.3
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 3.0e-26 122.5 84 64.3
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 3.0e-26 122.5 112 59.8
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 4.0e-26 122.1 122 53.3
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 4.0e-26 122.1 152 48.0
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 4.0e-26 122.1 117 58.1
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 4.0e-26 122.1 160 46.9
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 5.2e-26 121.7 157 48.4
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 5.2e-26 121.7 90 62.2
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 6.7e-26 121.3 90 65.6
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 8.8e-26 120.9 138 53.6
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 8.8e-26 120.9 103 58.3
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 1.1e-25 120.6 119 53.8
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 1.1e-25 120.6 80 67.5
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 2.6e-25 119.4 110 62.7
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 3.3e-25 119.0 162 48.1
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 3.3e-25 119.0 159 44.0
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 3.3e-25 119.0 75 76.0
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 5.7e-25 118.2 108 63.9
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 7.5e-25 117.9 82 73.2
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 1.3e-24 117.1 121 56.2
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 4.8e-24 115.2 129 52.7
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 4.8e-24 115.2 102 62.7
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 6.3e-24 114.8 157 49.7
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 8.2e-24 114.4 163 46.6
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 8.2e-24 114.4 99 64.6
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 1.1e-23 114.0 168 45.8
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.4e-23 113.6 136 45.6
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 2.4e-23 112.8 84 60.7
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 2.4e-23 112.8 95 60.0
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 3.1e-23 112.5 81 67.9
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 9.1e-23 110.9 168 45.8
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 2.0e-22 109.8 88 64.8
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 2.0e-22 109.8 162 41.4
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 2.7e-22 109.4 136 47.1
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 3.5e-22 109.0 136 42.6
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 3.5e-22 109.0 79 62.0
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 3.5e-22 109.0 112 53.6
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 3.5e-22 109.0 114 48.2
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 4.5e-22 108.6 107 48.6
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 5.9e-22 108.2 172 44.2
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 7.7e-22 107.8 81 65.4
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 7.7e-22 107.8 115 51.3
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 1.0e-21 107.5 95 57.9
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 1.0e-21 107.5 82 58.5
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 1.0e-21 107.5 129 47.3
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 1.3e-21 107.1 100 52.0
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.7e-21 106.7 81 64.2
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 5.0e-21 105.1 163 46.0
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 8.5e-21 104.4 161 44.1
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 8.5e-21 104.4 71 67.6
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.5e-20 103.6 171 46.2
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 1.9e-20 103.2 82 58.5
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 2.5e-20 102.8 94 56.4
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 7.2e-20 101.3 118 48.3
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 9.4e-20 100.9 90 53.3
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 6.8e-18 94.7 124 44.4
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 6.8e-18 94.7 81 59.3
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 3.4e-17 92.4 83 57.8
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 5.7e-17 91.7 90 53.3
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 1.3e-16 90.5 77 54.5
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 4.8e-16 88.6 108 49.1
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 4.8e-16 88.6 108 49.1
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.8e-15 86.7 90 48.9
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 3.1e-15 85.9 126 42.9
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 4.5e-14 82.0 129 38.8
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 7.7e-14 81.3 155 38.1
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 7.7e-14 81.3 155 38.1
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 1.3e-13 80.5 153 37.3
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 1.6e-11 73.6 100 44.0
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 6.8e-10 68.2 84 45.2
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 3.7e-08 62.4 76 44.7
Actinidia19406 Actinidia chinensis HOM05D005289 ORTHO05D006346 2.7e-06 56.2 87 41.4


User provided reference genes

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