Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 5.0e-224 780.8 392 100.0
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 7.9e-222 773.5 393 99.2
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 9.4e-215 750.0 393 96.9
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 5.0e-192 674.5 399 86.2
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 6.5e-192 674.1 391 87.0
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 4.0e-173 611.7 394 77.7
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 3.7e-171 605.1 388 79.1
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 6.4e-171 604.4 394 77.4
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.8e-170 602.8 390 76.7
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 2.4e-170 602.4 393 75.6
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 2.4e-170 602.4 393 75.6
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 9.2e-170 600.5 394 76.6
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 3.5e-169 598.6 394 75.4
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.7e-168 596.3 392 75.3
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 3.0e-168 595.5 390 76.9
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 5.0e-168 594.7 390 75.6
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 1.1e-167 593.6 394 75.4
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 2.5e-167 592.4 394 74.9
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 4.3e-167 591.7 394 75.4
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 4.3e-167 591.7 392 76.8
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 5.6e-167 591.3 392 74.5
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 9.5e-167 590.5 392 74.7
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 1.6e-166 589.7 394 75.4
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 2.1e-166 589.3 391 75.2
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 2.8e-166 589.0 394 74.6
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 4.7e-166 588.2 391 74.9
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 1.8e-165 586.3 391 74.7
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 1.8e-165 586.3 391 74.7
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 8.9e-165 583.9 392 73.0
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 1.2e-164 583.6 394 75.4
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 1.5e-164 583.2 393 75.6
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 7.5e-164 580.9 392 74.2
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 2.2e-163 579.3 391 74.9
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 4.9e-163 578.2 410 71.2
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 4.9e-163 578.2 387 75.5
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 6.4e-163 577.8 384 74.5
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 1.1e-162 577.0 388 74.7
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 1.4e-162 576.6 391 74.4
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 7.0e-162 574.3 394 73.9
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 1.2e-161 573.5 392 71.2
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 5.0e-160 568.2 389 72.0
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 8.6e-160 567.4 391 72.9
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 8.6e-160 567.4 387 72.6
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 2.5e-159 565.8 393 72.0
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 3.3e-159 565.5 392 72.7
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 4.3e-159 565.1 394 71.3
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 1.2e-158 563.5 397 70.8
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 1.2e-158 563.5 397 72.8
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 2.8e-158 562.4 392 71.2
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 2.8e-158 562.4 393 71.2
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 2.8e-158 562.4 392 71.2
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 3.6e-158 562.0 390 73.1
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 6.2e-158 561.2 526 59.1
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 6.2e-158 561.2 394 70.6
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 6.2e-158 561.2 394 70.1
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 1.4e-157 560.1 387 71.6
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 1.4e-157 560.1 387 71.6
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 1.4e-157 560.1 395 72.2
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 1.8e-157 559.7 387 71.3
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 4.0e-157 558.5 396 70.5
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 2.6e-156 555.8 392 71.4
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 4.4e-156 555.1 390 71.5
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 2.2e-155 552.7 392 71.2
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 2.9e-155 552.4 389 72.2
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 3.7e-155 552.0 392 70.2
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 4.9e-155 551.6 392 69.9
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 4.9e-155 551.6 390 69.5
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 8.3e-155 550.8 393 70.5
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 8.3e-155 550.8 394 68.8
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 3.2e-154 548.9 392 69.9
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 4.1e-154 548.5 391 69.8
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 4.1e-154 548.5 316 89.6
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 1.2e-153 547.0 392 70.4
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 1.6e-153 546.6 397 68.8
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 1.3e-152 543.5 391 68.5
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 1.9e-151 539.7 393 70.5
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 2.5e-151 539.3 392 70.7
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 3.3e-151 538.9 384 69.8
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 4.3e-151 538.5 384 69.5
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 4.4e-148 528.5 392 67.9
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 9.9e-148 527.3 393 66.7
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 6.4e-147 524.6 391 70.3
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 1.1e-146 523.9 426 65.0
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 7.1e-146 521.2 392 64.8
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 4.6e-145 518.5 363 72.5
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 7.8e-145 517.7 388 67.0
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 3.0e-144 515.8 389 67.1
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 5.6e-143 511.5 391 65.5
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 6.2e-142 508.1 391 67.8
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 8.1e-142 507.7 391 66.0
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 2.4e-141 506.1 393 64.6
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 5.2e-141 505.0 383 66.6
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 1.2e-140 503.8 386 65.3
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 5.8e-140 501.5 355 71.5
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 1.4e-138 496.9 394 65.5
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 4.6e-137 491.9 318 77.7
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.9e-135 486.5 359 70.2
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 7.4e-127 458.0 384 64.1
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.7e-123 446.8 318 73.0
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.2e-121 440.7 298 73.8
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.1e-118 429.9 298 72.1
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 2.0e-116 423.3 340 65.9
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.8e-115 419.1 314 68.2
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 3.0e-112 409.5 381 53.0
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 1.9e-111 406.8 263 74.1
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 3.3e-111 406.0 388 53.6
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 1.2e-105 387.5 388 52.6
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 1.0e-104 384.4 387 50.9
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 3.9e-104 382.5 411 49.1
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 2.5e-103 379.8 267 69.3
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 2.8e-102 376.3 233 76.0
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.1e-98 364.4 230 77.0
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 5.5e-90 335.5 278 63.7
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 4.8e-86 322.4 241 71.4
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 2.7e-68 263.5 245 59.6
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 1.8e-61 240.7 148 75.0
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 1.6e-57 227.6 438 35.8
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 2.1e-57 227.3 160 74.4
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 6.4e-54 215.7 400 35.2
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 5.4e-53 212.6 431 35.0
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 2.6e-47 193.7 159 62.3
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 1.2e-44 184.9 116 81.0
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 4.4e-39 166.4 107 69.2
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 4.6e-28 129.8 191 39.8
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 2.4e-21 107.5 66 72.7
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 4.6e-20 103.2 143 38.5
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 3.0e-19 100.5 153 43.1
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.9e-18 97.8 152 38.2
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 3.3e-18 97.1 104 57.7
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 3.6e-17 93.6 65 70.8
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 2.4e-13 80.9 110 38.2
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-12 77.8 70 51.4
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 6.0e-12 76.3 36 100.0
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 8.7e-11 72.4 70 51.4
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 1.9e-10 71.2 53 69.8
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 4.0e-08 63.5 85 35.3


User provided reference genes

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