Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 5.6e-144 514.2 255 100.0
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 5.8e-141 504.2 255 98.0
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.4e-139 498.8 255 97.3
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 2.9e-100 369.0 274 71.5
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 1.9e-99 366.3 273 71.4
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.1e-94 350.5 269 69.9
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 9.1e-94 347.4 269 69.5
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 9.1e-94 347.4 269 69.5
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 2.5e-91 339.3 275 68.0
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 3.6e-90 335.5 277 65.0
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.3e-76 290.4 278 59.0
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.5e-72 276.9 285 56.5
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 9.8e-72 274.2 284 57.7
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 2.8e-71 272.7 280 58.2
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 8.3e-71 271.2 299 54.2
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 8.6e-68 261.2 287 55.1
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 1.5e-67 260.4 271 57.2
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 3.3e-67 259.2 289 56.7
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 4.3e-67 258.8 298 55.7
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 4.0e-65 252.3 237 60.8
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 1.2e-64 250.8 272 56.2
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.2e-63 246.5 290 52.8
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 1.4e-62 243.8 298 53.4
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 2.4e-62 243.0 291 52.2
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 1.7e-60 236.9 286 52.8
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 3.0e-60 236.1 297 55.6
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 3.9e-60 235.7 245 60.4
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.5e-59 233.8 255 54.5
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 2.5e-59 233.0 292 51.0
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 2.5e-59 233.0 255 54.5
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 5.6e-59 231.9 282 54.6
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 7.3e-59 231.5 274 55.1
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 6.2e-58 228.4 282 55.3
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 8.1e-58 228.0 281 52.3
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 1.8e-57 226.9 303 51.8
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.8e-57 226.9 274 54.0
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 4.0e-57 225.7 250 59.2
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 4.1e-54 215.7 229 53.7
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 7.1e-54 214.9 285 48.8
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.2e-53 214.2 249 51.4
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 1.2e-53 214.2 318 46.9
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 1.2e-53 214.2 298 48.7
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 4.6e-53 212.2 283 47.3
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 6.0e-53 211.8 273 50.2
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 7.8e-53 211.5 242 51.7
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 1.7e-52 210.3 313 47.0
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 3.0e-52 209.5 241 52.3
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.1e-51 207.6 251 51.4
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.9e-51 206.8 331 46.5
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.9e-51 206.8 331 46.5
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 2.8e-50 203.0 233 54.1
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 6.2e-50 201.8 270 52.2
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 8.1e-50 201.4 338 45.3
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 6.8e-49 198.4 289 48.1
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.2e-48 197.6 242 52.5
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 4.4e-48 195.7 221 53.4
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 5.8e-48 195.3 275 49.8
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 2.2e-47 193.4 279 50.2
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 8.3e-47 191.4 267 49.4
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.1e-46 191.0 234 50.4
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 1.1e-46 191.0 271 49.1
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.9e-46 190.3 269 50.2
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 2.4e-46 189.9 247 52.6
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 4.1e-46 189.1 270 50.7
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 5.4e-46 188.7 279 45.9
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 2.7e-45 186.4 227 52.0
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 3.5e-45 186.0 250 50.0
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.0e-44 184.5 270 48.5
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.3e-44 184.1 249 48.2
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.3e-44 183.3 259 48.3
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 2.3e-44 183.3 213 54.5
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 6.6e-44 181.8 261 46.7
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 8.6e-44 181.4 266 49.6
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 8.6e-44 181.4 238 49.2
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 1.5e-43 180.6 269 47.6
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 3.3e-43 179.5 254 49.2
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 1.2e-42 177.6 266 47.4
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 1.2e-42 177.6 266 47.4
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 2.8e-42 176.4 266 46.6
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 3.6e-42 176.0 247 47.0
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 6.2e-42 175.3 265 47.2
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.4e-41 174.1 331 44.4
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 8.9e-41 171.4 266 45.9
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 1.5e-40 170.6 280 45.4
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.5e-40 170.6 284 44.0
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 2.6e-40 169.9 223 51.6
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 3.4e-40 169.5 237 48.9
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 5.8e-40 168.7 285 43.9
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 5.8e-40 168.7 255 46.7
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 5.8e-40 168.7 224 52.7
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 7.6e-40 168.3 254 47.2
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 9.9e-40 167.9 254 47.2
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.3e-39 167.5 237 49.8
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 2.9e-39 166.4 290 46.2
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 6.4e-39 165.2 207 50.7
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 3.2e-38 162.9 257 44.4
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 3.2e-38 162.9 222 46.8
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.2e-37 161.0 277 42.2
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 4.6e-37 159.1 259 44.0
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 7.8e-37 158.3 224 45.5
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.7e-36 157.1 202 51.0
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 5.6e-35 152.1 210 46.2
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 7.3e-35 151.8 130 65.4
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 7.3e-35 151.8 191 51.8
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 3.6e-34 149.4 227 48.0
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 9.0e-33 144.8 217 45.6
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 1.2e-32 144.4 219 47.9
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 6.4e-31 138.7 165 50.9
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.4e-30 137.5 75 88.0
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 1.4e-30 137.5 272 38.6
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 1.4e-30 137.5 284 41.5
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 4.2e-30 136.0 249 43.8
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 9.3e-30 134.8 220 45.9
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 3.5e-29 132.9 220 47.3
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 6.0e-29 132.1 209 46.4
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 7.9e-29 131.7 212 44.3
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.0e-28 131.3 237 41.8
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 1.0e-28 131.3 82 74.4
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 1.0e-28 131.3 251 38.2
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 6.6e-28 128.6 216 46.3
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 6.6e-28 128.6 221 43.4
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 6.6e-28 128.6 136 55.1
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 6.6e-28 128.6 201 44.8
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 4.3e-27 125.9 224 42.9
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 9.6e-27 124.8 213 42.7
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.4e-25 120.9 160 50.0
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 5.3e-25 119.0 279 36.2
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 5.3e-25 119.0 158 50.0
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 1.5e-24 117.5 101 63.4
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 7.6e-24 115.2 257 40.5
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 4.9e-23 112.5 237 44.7
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 8.4e-23 111.7 198 41.4
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 1.9e-22 110.5 211 40.8
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 1.9e-22 110.5 211 40.8
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 2.1e-21 107.1 226 40.3
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 3.5e-21 106.3 210 41.9
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.0e-20 104.8 170 47.6
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.3e-20 104.4 222 39.6
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 1.9e-19 100.5 223 38.6
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 3.1e-17 93.2 237 36.3
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 6.9e-17 92.0 259 38.6
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 3.2e-14 83.2 201 39.8
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 7.9e-13 78.6 203 36.5
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 3.0e-12 76.6 186 36.0
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 5.1e-12 75.9 165 38.2
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 8.7e-12 75.1 80 53.8
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 4.3e-11 72.8 267 33.0
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.1e-10 70.5 43 74.4
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.1e-10 70.5 43 74.4
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.1e-09 68.2 68 54.4
BcaC07g38691 Brassica carinata HOM05D004123 ORTHO05D004768 5.3e-09 65.9 217 31.8
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 5.3e-09 65.9 42 69.0
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 6.9e-09 65.5 75 50.7
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.2e-08 64.7 51 56.9
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.0e-08 63.9 69 50.7
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.4e-08 63.2 105 37.1
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 4.5e-08 62.8 225 31.6
A06p08360 Brassica napus HOM05D004123 ORTHO05D004768 5.8e-08 62.4 218 34.9
BraA06t24033Z Brassica rapa HOM05D004123 ORTHO05D004768 5.8e-08 62.4 218 33.9
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 5.8e-08 62.4 170 33.5
Rhsim01G0123100 Rhododendron simsii HOM05D000333 ORTHO05D000190 3.8e-07 59.7 144 31.9
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 5.0e-07 59.3 270 30.0
C05p09900 Brassica napus HOM05D004123 ORTHO05D004768 4.2e-06 56.2 218 29.8
BolC5t29729H Brassica oleracea HOM05D004123 ORTHO05D004768 4.2e-06 56.2 218 29.8
DCAR_007247 Daucus carota HOM05D004123 ORTHO05D004768 9.3e-06 55.1 153 37.9
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 9.3e-06 55.1 144 37.5
Sopen01g001230 Solanum pennellii HOM05D000333 ORTHO05D000190 9.3e-06 55.1 118 34.7


User provided reference genes

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