Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 2.2e-229 798.5 376 100.0
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 6.4e-221 770.4 376 96.3
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.5e-201 706.1 377 87.0
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 9.3e-196 686.8 377 84.9
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 2.5e-180 635.6 306 97.1
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 7.9e-179 630.6 362 80.7
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 1.4e-162 576.6 378 70.4
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 6.8e-162 574.3 377 71.4
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 4.4e-161 571.6 380 70.8
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 2.4e-159 565.8 378 70.6
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 1.2e-155 553.5 378 67.5
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 2.7e-155 552.4 378 68.0
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 2.0e-153 546.2 379 68.1
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 2.6e-153 545.8 385 67.3
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 1.1e-151 540.4 378 67.2
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 1.8e-151 539.7 378 66.4
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 4.5e-150 535.0 376 65.7
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 7.7e-150 534.3 399 62.7
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 7.7e-150 534.3 378 64.8
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 6.6e-149 531.2 378 65.9
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 6.6e-149 531.2 379 63.6
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 1.5e-148 530.0 377 64.2
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 4.2e-148 528.5 399 62.9
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 9.5e-148 527.3 379 63.1
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 1.2e-147 526.9 378 63.5
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.1e-147 526.2 379 65.2
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 2.8e-147 525.8 406 63.1
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 6.1e-147 524.6 383 62.9
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 8.0e-147 524.2 380 64.7
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 8.0e-147 524.2 380 64.7
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 1.0e-146 523.9 385 64.2
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.0e-146 523.9 384 64.3
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 8.9e-146 520.8 381 63.5
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 1.2e-145 520.4 385 63.6
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 5.7e-145 518.1 384 64.3
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 7.5e-145 517.7 378 63.2
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 1.3e-144 516.9 385 63.9
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 1.8e-143 513.1 377 64.2
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.6e-142 510.0 378 63.0
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 1.6e-142 510.0 378 62.7
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 5.9e-142 508.1 468 54.5
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 1.0e-141 507.3 377 61.8
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 2.9e-141 505.8 377 62.6
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 8.6e-141 504.2 378 62.4
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 1.5e-140 503.4 382 63.4
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 1.9e-140 503.1 378 61.6
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 2.5e-140 502.7 378 61.9
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 3.3e-140 502.3 377 62.1
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 5.6e-140 501.5 378 63.0
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 7.3e-140 501.1 382 61.8
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 9.5e-140 500.7 378 63.5
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 9.5e-140 500.7 378 62.2
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 9.5e-140 500.7 377 62.6
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.2e-139 500.4 382 62.6
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 3.6e-139 498.8 381 61.4
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 6.8e-138 494.6 377 62.1
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 6.8e-138 494.6 378 62.2
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 1.2e-137 493.8 347 67.7
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 2.0e-137 493.0 370 62.4
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 2.6e-137 492.7 405 56.3
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 7.5e-137 491.1 394 61.4
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 7.5e-137 491.1 383 62.1
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 3.7e-136 488.8 377 60.7
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 4.9e-136 488.4 378 61.4
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 8.3e-136 487.6 382 62.0
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 4.6e-134 481.9 382 61.5
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 6.0e-134 481.5 380 60.3
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 1.3e-133 480.3 379 60.4
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 3.9e-133 478.8 348 65.8
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.5e-132 476.9 378 60.3
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 3.1e-130 469.2 345 62.9
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 6.8e-130 468.0 377 57.3
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 3.7e-128 462.2 423 54.8
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 8.3e-128 461.1 362 59.4
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 1.0e-125 454.1 377 58.1
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 3.6e-123 445.7 377 55.7
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 8.1e-123 444.5 321 64.5
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 5.2e-122 441.8 379 55.1
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 2.6e-121 439.5 350 58.9
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 2.9e-120 436.0 393 55.5
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 4.4e-113 412.1 352 57.1
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 2.9e-112 409.5 337 59.6
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 8.7e-109 397.9 384 53.9
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 9.6e-108 394.4 309 57.9
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 3.4e-105 386.0 276 67.4
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 2.1e-102 376.7 381 48.3
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 6.9e-98 361.7 392 45.9
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.2e-97 360.9 390 47.2
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 6.0e-94 348.6 284 57.7
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 7.9e-94 348.2 247 66.0
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 1.8e-93 347.1 300 54.7
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 4.3e-92 342.4 378 44.4
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 8.1e-91 338.2 399 44.9
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 4.2e-87 325.9 259 60.2
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 6.9e-82 308.5 379 42.2
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 7.6e-81 305.1 376 43.6
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 6.7e-77 292.0 312 50.0
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 5.5e-71 272.3 377 40.1
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 2.1e-70 270.4 356 41.6
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 7.9e-70 268.5 215 58.6
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 6.8e-45 185.7 315 34.9
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 3.5e-41 173.3 119 71.4
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.0e-37 161.8 178 48.3
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 6.8e-37 159.1 375 31.2
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 8.8e-37 158.7 375 30.4
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.5e-36 157.9 371 31.3
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 1.5e-36 157.9 369 31.4
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 5.7e-36 156.0 374 33.2
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 7.5e-36 155.6 152 48.0
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 1.7e-35 154.5 373 29.8
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 1.7e-35 154.5 374 32.9
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 2.2e-35 154.1 374 32.6
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 2.8e-35 153.7 374 32.6
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 3.7e-35 153.3 373 30.8
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 3.7e-35 153.3 373 30.8
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 3.7e-35 153.3 380 31.6
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 4.9e-35 152.9 373 30.8
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 6.3e-35 152.5 379 29.3
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 6.3e-35 152.5 373 31.4
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 1.1e-34 151.8 371 29.4
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 1.1e-34 151.8 371 29.4
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 1.8e-34 151.0 374 32.9
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 1.8e-34 151.0 369 31.2
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 2.4e-34 150.6 378 28.3
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 2.4e-34 150.6 373 31.1
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 2.4e-34 150.6 373 31.1
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 2.4e-34 150.6 373 31.4
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 2.4e-34 150.6 373 31.4
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 3.1e-34 150.2 373 32.2
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 3.1e-34 150.2 371 29.6
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 4.1e-34 149.8 373 30.6
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 4.1e-34 149.8 373 30.8
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 5.4e-34 149.4 373 29.5
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 9.2e-34 148.7 380 28.4
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 9.2e-34 148.7 373 31.4
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 1.6e-33 147.9 369 31.2
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 1.6e-33 147.9 376 29.0
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 2.0e-33 147.5 371 30.5
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 2.0e-33 147.5 373 30.8
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 2.7e-33 147.1 373 31.1
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 4.5e-33 146.4 371 29.6
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 4.5e-33 146.4 376 33.0
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 5.9e-33 146.0 373 30.3
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 7.7e-33 145.6 352 31.2
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 1.3e-32 144.8 374 31.3
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 1.3e-32 144.8 373 31.1
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 1.7e-32 144.4 374 32.4
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 2.3e-32 144.1 373 30.6
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 2.9e-32 143.7 372 29.6
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 1.5e-31 141.4 373 30.8
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 3.3e-31 140.2 379 28.0
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 3.3e-31 140.2 381 30.2
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 7.3e-31 139.0 376 28.5
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 7.3e-31 139.0 373 28.7
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 1.2e-30 138.3 379 29.3
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 2.1e-30 137.5 365 29.6
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 8.0e-30 135.6 371 31.3
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.0e-29 135.2 129 55.0
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 4.0e-29 133.3 379 29.0
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 8.9e-29 132.1 369 27.6
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 2.0e-28 131.0 131 47.3
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 2.6e-28 130.6 371 28.0
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 4.4e-28 129.8 371 26.1
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 2.4e-26 124.0 378 26.2
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 4.6e-25 119.8 86 67.4
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 1.7e-24 117.9 436 28.0
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 6.6e-24 115.9 72 70.8
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 4.7e-22 109.8 374 26.5
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 6.2e-22 109.4 122 49.2
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 1.0e-21 108.6 73 64.4
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 2.0e-20 104.4 140 40.0
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 2.6e-20 104.0 286 27.6
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 4.4e-20 103.2 297 29.6
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 4.9e-19 99.8 128 40.6
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 1.3e-16 91.7 82 51.2
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 4.3e-15 86.7 199 32.2
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 1.4e-13 81.6 64 57.8
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 1.3e-11 75.1 59 55.9
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 2.9e-11 73.9 71 52.1
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 4.9e-11 73.2 189 27.0
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 7.8e-09 65.9 123 35.8
C06p36300 Brassica napus HOM05D001404 ORTHO05D009009 1.9e-07 61.2 50 58.0
MELO3C012030.2 Cucumis melo HOM05D001404 ORTHO05D009009 1.9e-07 61.2 35 71.4
Oeu048569.1 Olea europaea HOM05D000240 ORTHO05D002608 2.5e-07 60.8 38 71.1


User provided reference genes

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