Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G184100 Gossypium raimondii HOM05D008443 ORTHO05D010587 4.3e-43 177.6 88 100.0
Gohir.A03G141200 Gossypium hirsutum HOM05D008443 ORTHO05D010587 7.1e-38 160.2 81 98.8
Gohir.D02G164100 Gossypium hirsutum HOM05D008443 ORTHO05D010587 2.7e-37 158.3 81 98.8
Duzib268G1406 Durio zibethinus HOM05D008443 ORTHO05D010587 9.6e-27 123.2 80 78.8
Gohir.A05G318400 Gossypium hirsutum HOM05D008443 ORTHO05D010587 7.1e-22 107.1 79 70.9
Manes.05G088700 Manihot esculenta HOM05D008443 ORTHO05D010587 5.1e-20 100.9 83 61.4
Manes.01G198240 Manihot esculenta HOM05D008443 ORTHO05D010587 1.1e-19 99.8 78 65.4
Gorai.009G343700 Gossypium raimondii HOM05D008443 ORTHO05D010587 1.8e-17 92.4 79 59.5
QL03p061920 Quercus lobata HOM05D008443 ORTHO05D010587 5.3e-17 90.9 78 61.5
Gohir.D05G320600 Gossypium hirsutum HOM05D008443 ORTHO05D010587 9.0e-17 90.1 79 60.8
CANSAT01G1518 Cannabis sativa HOM05D008443 ORTHO05D010587 1.5e-16 89.4 82 62.2
CiPaw.05G147800 Carya illinoinensis HOM05D008443 ORTHO05D010587 1.5e-16 89.4 69 66.7
ClCG05G025160 Citrullus lanatus HOM05D008443 ORTHO05D010587 2.0e-16 89.0 79 57.0
CSS0001689 Camellia sinensis var. sinensis HOM05D008443 ORTHO05D010587 1.0e-15 86.7 83 54.2
Nn3g16936 Nelumbo nucifera HOM05D008443 ORTHO05D010587 2.2e-15 85.5 52 75.0
MBI15_g19742_MAGBIO Magnolia biondii HOM05D008443 ORTHO05D010587 8.5e-15 83.6 85 52.9
TAR629G3213 Trochodendron aralioides HOM05D008443 ORTHO05D010587 1.1e-14 83.2 78 53.8
Aqoxy3G03049 Aquilegia oxysepala HOM05D008443 ORTHO05D010587 7.2e-14 80.5 52 69.2
TWI36G1347 Tripterygium wilfordii HOM05D008443 ORTHO05D010587 9.4e-14 80.1 73 58.9
MELO3C012013.2 Cucumis melo HOM05D008443 ORTHO05D010587 1.2e-13 79.7 74 51.4
CsaV3_5G031740 Cucumis sativus L. HOM05D008443 ORTHO05D010587 1.6e-13 79.3 83 47.0
Eucgr.B03356 Eucalyptus grandis HOM05D008443 ORTHO05D010587 3.6e-13 78.2 67 61.2
Phvul.003G053700 Phaseolus vulgaris HOM05D008443 ORTHO05D010587 3.6e-13 78.2 76 51.3
Lalb_Chr16g0382381 Lupinus albus HOM05D008443 ORTHO05D010587 4.6e-13 77.8 76 50.0
Glyma.18G135000 Glycine max HOM05D008443 ORTHO05D010587 1.4e-12 76.3 76 51.3
MD16G1089300 Malus domestica HOM05D008443 ORTHO05D010587 1.4e-12 76.3 58 69.0
PGR102G0936 Punica granatum HOM05D008443 ORTHO05D010587 1.4e-12 76.3 52 67.3
Prupe.1G256700 Prunus persica HOM05D008443 ORTHO05D010587 3.0e-12 75.1 60 65.0
Glyma.08G289300 Glycine max HOM05D008443 ORTHO05D010587 6.7e-12 73.9 76 51.3
Rhsim12G0048000 Rhododendron simsii HOM05D008443 ORTHO05D010587 8.8e-12 73.6 73 53.4
MD13G1089100 Malus domestica HOM05D008443 ORTHO05D010587 1.5e-11 72.8 49 71.4
VMungo0251G0489 Vigna mungo HOM05D008443 ORTHO05D010587 2.5e-11 72.0 78 50.0
ATR1149G093 Amborella trichopoda HOM05D008443 ORTHO05D010587 4.3e-11 71.2 67 53.7
MSTRG.2385 Avicennia marina HOM05D008443 ORTHO05D010587 1.3e-10 69.7 69 49.3
TPR.G35976 Trifolium pratense HOM05D008443 ORTHO05D010587 1.7e-10 69.3 76 48.7
AUR62013990 Chenopodium quinoa HOM05D008443 ORTHO05D010587 2.2e-10 68.9 74 54.1
FAN17G0561 Fragaria x ananassa HOM05D008443 ORTHO05D010587 4.8e-10 67.8 51 58.8
FAN22G1825 Fragaria x ananassa HOM05D008443 ORTHO05D010587 4.8e-10 67.8 51 58.8
RcHm_v2.0_Chr4g0444191 Rosa chinensis HOM05D008443 ORTHO05D010587 1.4e-09 66.2 51 58.8
Aa31LG7G7790 Aethionema arabicum HOM05D009339 ORTHO05D011480 3.1e-09 65.1 61 55.7
AT1G23995 Arabidopsis thaliana HOM05D009339 ORTHO05D011480 4.1e-09 64.7 72 45.8
Lsat_1_v5_gn_3_47940 Lactuca sativa HOM05D008443 ORTHO05D010587 1.5e-08 62.8 50 58.0
Lj2g0011197 Lotus japonicus HOM05D008443 ORTHO05D010587 2.0e-08 62.4 78 41.0
Dinv31086 Davidia involucrata HOM05D000086 ORTHO05D000983 2.6e-08 62.0 52 61.5
Medtr8g063410 Medicago truncatula HOM05D008443 ORTHO05D010587 3.4e-08 61.6 49 61.2
Dinv24885 Davidia involucrata HOM05D000086 ORTHO05D000983 5.9e-08 60.8 55 58.2
Cfa019086 Carpinus fangiana HOM05D008443 ORTHO05D010587 7.7e-08 60.5 56 48.2
Haze_07480 Corylus avellana HOM05D008443 ORTHO05D010587 7.7e-08 60.5 51 49.0
CDE07G0196 Ceratophyllum demersum HOM05D008443 ORTHO05D010587 1.7e-07 59.3 62 46.8
BcaB03g14788 Brassica carinata HOM05D009339 ORTHO05D011480 3.8e-07 58.2 74 47.3
Sc11g0001310 Simmondsia chinensis HOM05D008443 ORTHO05D010587 5.0e-07 57.8 49 57.1
HPP92_017321 Vanilla planifolia HOM05D008443 ORTHO05D010587 6.5e-07 57.4 78 43.6
AT1G23965 Arabidopsis thaliana HOM05D009339 ORTHO05D011480 1.4e-06 56.2 71 42.3
COL.COLO4_24771 Corchorus olitorius HOM05D008443 ORTHO05D010587 1.4e-06 56.2 52 55.8
DCAR_031087 Daucus carota HOM05D008443 ORTHO05D010587 2.5e-06 55.5 47 66.0
HPP92_010558 Vanilla planifolia HOM05D008443 ORTHO05D010587 3.2e-06 55.1 74 41.9
Zm00001eb311500 Zea mays HOM05D040179 ORTHO05D037189 3.2e-06 55.1 66 43.9
AT1G70270 Arabidopsis thaliana HOM05D009339 ORTHO05D011480 4.2e-06 54.7 76 44.7
C06p36170 Brassica napus HOM05D009339 ORTHO05D011480 5.5e-06 54.3 73 45.2
BcaC08g45823 Brassica carinata HOM05D009339 ORTHO05D011480 7.2e-06 53.9 73 45.2
BolC6t38735H Brassica oleracea HOM05D009339 ORTHO05D011480 7.2e-06 53.9 73 45.2
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 7.2e-06 53.9 49 51.0
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 7.2e-06 53.9 49 51.0
A07p31120 Brassica napus HOM05D009339 ORTHO05D011480 9.4e-06 53.5 73 43.8


User provided reference genes

Program Settings