Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G160600 Gossypium raimondii HOM05D000729 ORTHO05D001063 5.7e-50 200.7 105 100.0
Gohir.D02G143001 Gossypium hirsutum HOM05D000729 ORTHO05D001063 6.9e-48 193.7 105 97.1
Gorai.003G150500 Gossypium raimondii HOM05D000729 ORTHO05D001063 2.1e-44 182.2 105 90.5
Nn029s41589 Nelumbo nucifera HOM05D000729 ORTHO05D001063 3.6e-44 181.4 105 90.5
Nn206s45070 Nelumbo nucifera HOM05D000729 ORTHO05D001063 3.6e-44 181.4 105 90.5
Nn219s45285 Nelumbo nucifera HOM05D000729 ORTHO05D001063 3.6e-44 181.4 105 90.5
Nn233s45562 Nelumbo nucifera HOM05D000729 ORTHO05D001063 3.6e-44 181.4 105 90.5
Nn269s46006 Nelumbo nucifera HOM05D000729 ORTHO05D001063 3.6e-44 181.4 105 90.5
PGR111G0104 Punica granatum HOM05D000729 ORTHO05D001063 3.6e-44 181.4 105 90.5
PGR111G0125 Punica granatum HOM05D000729 ORTHO05D001063 3.6e-44 181.4 105 90.5
Gohir.A05G323796 Gossypium hirsutum HOM05D000729 ORTHO05D001063 4.6e-44 181.0 104 90.4
Gohir.D01G101839 Gossypium hirsutum HOM05D000729 ORTHO05D001063 6.1e-44 180.6 105 89.5
PSO548G0058 Papaver somniferum HOM05D000729 ORTHO05D001063 6.1e-44 180.6 105 89.5
PSO548G0065 Papaver somniferum HOM05D000729 ORTHO05D001063 6.1e-44 180.6 105 89.5
AL1G51260 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 1.4e-43 179.5 104 90.4
AL7G44080 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 1.4e-43 179.5 104 90.4
Lalb_Chr07g0191911 Lupinus albus HOM05D000729 ORTHO05D001063 1.4e-43 179.5 105 89.5
QL93p0823_0001 Quercus lobata HOM05D000729 ORTHO05D001063 1.4e-43 179.5 104 90.4
Sed0001647 Sechium edule HOM05D000729 ORTHO05D001063 1.4e-43 179.5 105 89.5
Hma1.2p1_0052F.1_g030753 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 1.8e-43 179.1 105 89.5
Hma1.2p1_0052F.1_g030756 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 1.8e-43 179.1 105 89.5
Hma1.2p1_1244F.1_g270050 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 1.8e-43 179.1 105 89.5
Hma1.2p1_1244F.1_g270060 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 1.8e-43 179.1 105 89.5
ATCG00890 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 2.3e-43 178.7 104 90.4
ATCG01250 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 2.3e-43 178.7 104 90.4
BolSC29t60494H Brassica oleracea HOM05D000729 ORTHO05D001063 2.3e-43 178.7 104 89.4
BolSC29t60537H Brassica oleracea HOM05D000729 ORTHO05D001063 2.3e-43 178.7 104 89.4
BolSC45t60922H Brassica oleracea HOM05D000729 ORTHO05D001063 2.3e-43 178.7 104 89.4
BolSC47t61055H Brassica oleracea HOM05D000729 ORTHO05D001063 2.3e-43 178.7 104 89.4
BraSC103t45436Z Brassica rapa HOM05D000729 ORTHO05D001063 2.3e-43 178.7 104 89.4
BraSC25t45897Z Brassica rapa HOM05D000729 ORTHO05D001063 2.3e-43 178.7 104 89.4
BraSC59t46538Z Brassica rapa HOM05D000729 ORTHO05D001063 2.3e-43 178.7 104 89.4
BraSC59t46561Z Brassica rapa HOM05D000729 ORTHO05D001063 2.3e-43 178.7 104 89.4
AL2G21870 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 3.0e-43 178.3 104 89.4
arahy.Tifrunner.gnm1.ann1.8IFR8Y Arachis hypogaea HOM05D000729 ORTHO05D001063 3.9e-43 177.9 105 89.5
arahy.Tifrunner.gnm1.ann1.A85ADF Arachis hypogaea HOM05D000729 ORTHO05D001063 3.9e-43 177.9 105 89.5
arahy.Tifrunner.gnm1.ann1.FU0XIN Arachis hypogaea HOM05D000729 ORTHO05D001063 3.9e-43 177.9 105 89.5
arahy.Tifrunner.gnm1.ann1.NGJ0AN Arachis hypogaea HOM05D000729 ORTHO05D001063 3.9e-43 177.9 105 89.5
arahy.Tifrunner.gnm1.ann1.NIYG2M Arachis hypogaea HOM05D000729 ORTHO05D001063 3.9e-43 177.9 105 89.5
arahy.Tifrunner.gnm1.ann1.S6TNUT Arachis hypogaea HOM05D000729 ORTHO05D001063 3.9e-43 177.9 105 89.5
Lalb_Chr05g0227471 Lupinus albus HOM05D000729 ORTHO05D001063 5.1e-43 177.6 105 89.5
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 5.1e-43 177.6 105 87.6
Gohir.A11G180330 Gossypium hirsutum HOM05D000729 ORTHO05D001063 8.8e-43 176.8 105 88.6
Lsat_1_v5_gn_3_92301 Lactuca sativa HOM05D000729 ORTHO05D001063 8.8e-43 176.8 105 88.6
Lsat_1_v5_gn_9_18660 Lactuca sativa HOM05D000729 ORTHO05D001063 8.8e-43 176.8 105 88.6
RcHm_v2.0_Chr5g0051111 Rosa chinensis HOM05D000729 ORTHO05D001063 8.8e-43 176.8 105 88.6
RcHm_v2.0_CPg0501771 Rosa chinensis HOM05D000729 ORTHO05D001063 8.8e-43 176.8 105 88.6
RcHm_v2.0_CPg0502641 Rosa chinensis HOM05D000729 ORTHO05D001063 8.8e-43 176.8 105 88.6
Phvul.003G089803 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 1.1e-42 176.4 105 87.6
Phvul.009G090284 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 1.1e-42 176.4 105 87.6
EL10As15g24113 Beta vulgaris HOM05D000729 ORTHO05D001063 2.0e-42 175.6 105 87.6
CAN.G1045.7 Capsicum annuum HOM05D000729 ORTHO05D001063 2.5e-42 175.3 105 87.6
CAN.G1875.3 Capsicum annuum HOM05D000729 ORTHO05D001063 2.5e-42 175.3 105 87.6
CAN.G21.56 Capsicum annuum HOM05D000729 ORTHO05D001063 2.5e-42 175.3 105 87.6
CAN.G267.19 Capsicum annuum HOM05D000729 ORTHO05D001063 2.5e-42 175.3 105 87.6
CAN.G343.3 Capsicum annuum HOM05D000729 ORTHO05D001063 2.5e-42 175.3 105 87.6
CAN.G547.17 Capsicum annuum HOM05D000729 ORTHO05D001063 2.5e-42 175.3 105 87.6
Lj2P1239T117 Lonicera japonica HOM05D000729 ORTHO05D001063 2.5e-42 175.3 105 87.6
Gohir.D06G107201 Gossypium hirsutum HOM05D000729 ORTHO05D001063 3.3e-42 174.9 105 87.6
Lj2P1238T95 Lonicera japonica HOM05D000729 ORTHO05D001063 3.3e-42 174.9 104 87.5
SabraPtG0004800 Salix brachista HOM05D000729 ORTHO05D001063 3.3e-42 174.9 105 87.6
CSS0038723 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr00c0264g0572891 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr00c0386g0574421 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr00c0434g0574661 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr00c0554g0575661 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr00c0788g0577381 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr01g0020151 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr05g0150471 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr05g0152351 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr05g0152491 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr07g0194901 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr10g0284481 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr10g0317951 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr11g0321181 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr11g0327111 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr11g0333791 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr12g0369921 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr13g0416581 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQChr17g0569661 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQCPg0580271 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
HanXRQCPg0580451 Helianthus annuus HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 87.6
Medtr0002s0310 Medicago truncatula HOM05D000729 ORTHO05D001063 4.3e-42 174.5 105 86.7
BraSC103t45493Z Brassica rapa HOM05D000729 ORTHO05D001063 5.7e-42 174.1 105 88.6
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 5.7e-42 174.1 105 86.7
Gohir.A02G077402 Gossypium hirsutum HOM05D000729 ORTHO05D001063 7.4e-42 173.7 105 86.7
DCAR_032530 Daucus carota HOM05D000729 ORTHO05D001063 1.3e-41 172.9 105 86.7
DCAR_032546 Daucus carota HOM05D000729 ORTHO05D001063 1.3e-41 172.9 105 86.7
EL10Ac5g11886 Beta vulgaris HOM05D000729 ORTHO05D001063 1.7e-41 172.6 105 86.7
Gohir.A08G249972 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.7e-41 172.6 105 88.6
HanXRQChr13g0418941 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-41 172.6 104 86.5
SalBow1G3941 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.2e-41 172.2 105 86.7
SalBow1G4562 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.2e-41 172.2 105 86.7
SalBow1G6647 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.2e-41 172.2 105 86.7
LjContig00489g0003974 Lotus japonicus HOM05D000729 ORTHO05D001063 2.8e-41 171.8 107 86.9
Solyc00g500146.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 8.2e-41 170.2 105 85.7
FAN24G1010 Fragaria x ananassa HOM05D000729 ORTHO05D001063 1.4e-40 169.5 105 85.7
Lj4g0028091 Lotus japonicus HOM05D000729 ORTHO05D001063 1.4e-40 169.5 105 84.8
Cpa.g.sc2.66 Carica papaya HOM05D000729 ORTHO05D001063 1.8e-40 169.1 105 83.8
Potri.011G075051 Populus trichocarpa HOM05D000729 ORTHO05D001063 1.8e-40 169.1 105 84.8
CAN.G1148.5 Capsicum annuum HOM05D000729 ORTHO05D001063 2.4e-40 168.7 105 85.7
CAN.G262.3 Capsicum annuum HOM05D000729 ORTHO05D001063 4.1e-40 167.9 103 86.4
RcHm_v2.0_Chr2g0118411 Rosa chinensis HOM05D000729 ORTHO05D001063 4.1e-40 167.9 105 84.8
CAN.G1191.10 Capsicum annuum HOM05D000729 ORTHO05D001063 5.3e-40 167.5 105 84.8
CAN.G1021.15 Capsicum annuum HOM05D000729 ORTHO05D001063 9.1e-40 166.8 105 84.8
Lalb_Chr12g0206641 Lupinus albus HOM05D000729 ORTHO05D001063 1.2e-39 166.4 100 88.0
arahy.Tifrunner.gnm1.ann1.R4S00L Arachis hypogaea HOM05D000729 ORTHO05D001063 2.6e-39 165.2 105 84.8
Lsat_1_v5_gn_4_11820 Lactuca sativa HOM05D000729 ORTHO05D001063 6.5e-38 160.6 104 80.8
arahy.Tifrunner.gnm1.ann1.0BYT70 Arachis hypogaea HOM05D000729 ORTHO05D001063 1.9e-37 159.1 105 82.9
Oeu012825.1 Olea europaea HOM05D000729 ORTHO05D001063 9.4e-37 156.8 105 80.0
Solyc11g021090.3 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.6e-36 156.0 97 84.5
HanXRQChr03g0064311 Helianthus annuus HOM05D000729 ORTHO05D001063 2.7e-36 155.2 98 85.7
HanXRQChr00c0585g0576201 Helianthus annuus HOM05D000729 ORTHO05D001063 1.5e-34 149.4 87 87.4
Gohir.A09G046338 Gossypium hirsutum HOM05D000729 ORTHO05D001063 7.7e-31 137.1 105 76.2
TPR.G39041 Trifolium pratense HOM05D000729 ORTHO05D001063 1.0e-30 136.7 92 81.5
CARHR282330 Cardamine hirsuta HOM05D000729 ORTHO05D001063 1.7e-30 136.0 104 73.1
CARHR282530 Cardamine hirsuta HOM05D000729 ORTHO05D001063 1.7e-30 136.0 104 73.1
Solyc10g061887.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 2.2e-30 135.6 74 89.2
Gohir.D02G117466 Gossypium hirsutum HOM05D000729 ORTHO05D001063 3.8e-30 134.8 105 76.2
HanXRQChr17g0567651 Helianthus annuus HOM05D000729 ORTHO05D001063 6.5e-30 134.0 105 75.2
Migut.D01322 Erythranthe guttata HOM05D000729 ORTHO05D001063 1.1e-29 133.3 104 71.2
Gorai.010G067500 Gossypium raimondii HOM05D000729 ORTHO05D001063 1.1e-29 133.3 89 82.0
AL9U12020 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 1.5e-29 132.9 104 72.1
Gorai.003G065500 Gossypium raimondii HOM05D000729 ORTHO05D001063 1.5e-29 132.9 88 80.7
Gohir.D11G234166 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.5e-29 132.1 88 80.7
HanXRQChr00c0451g0574811 Helianthus annuus HOM05D000729 ORTHO05D001063 3.6e-28 128.3 100 75.0
arahy.Tifrunner.gnm1.ann1.IXN31S Arachis hypogaea HOM05D000729 ORTHO05D001063 8.0e-28 127.1 105 72.4
Nitab4.5_0004929g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 3.3e-26 121.7 85 81.2
HanXRQChr00c0533g0575531 Helianthus annuus HOM05D000729 ORTHO05D001063 5.7e-26 120.9 105 69.5
Psat0s2011g0040 Pisum sativum HOM05D000729 ORTHO05D001063 1.7e-25 119.4 99 62.6
Lsat_1_v5_gn_5_163541 Lactuca sativa HOM05D000729 ORTHO05D001063 6.3e-25 117.5 105 67.6
HanXRQChr00c0572g0575991 Helianthus annuus HOM05D000729 ORTHO05D001063 1.1e-24 116.7 98 72.4
Migut.D01404 Erythranthe guttata HOM05D000729 ORTHO05D001063 1.8e-24 115.9 72 87.5
Nitab4.5_0018575g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 7.0e-24 114.0 76 81.6
EL10As12g24040 Beta vulgaris HOM05D000729 ORTHO05D001063 1.6e-23 112.8 75 81.3
Gohir.D11G278650 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.2e-22 109.0 79 78.5
Thhalv10027086m.g Eutrema salsugineum HOM05D000729 ORTHO05D001063 2.9e-22 108.6 62 85.5
BraSC58t46469Z Brassica rapa HOM05D000729 ORTHO05D001063 6.5e-22 107.5 56 92.9
Nitab4.5_0012260g0090 Nicotiana tabacum HOM05D000729 ORTHO05D001063 6.5e-22 107.5 103 63.1
Solyc04g039790.3 Solanum lycopersicum HOM05D000729 ORTHO05D001063 6.5e-22 107.5 88 75.0
Gorai.007G300800 Gossypium raimondii HOM05D000729 ORTHO05D001063 1.5e-21 106.3 75 80.0
HanXRQChr00c0349g0574001 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-21 103.6 57 89.5
Glyma.05G094500 Glycine max HOM05D000729 ORTHO05D001063 1.2e-20 103.2 68 82.4
Solyc01g017260.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 3.6e-20 101.7 88 69.3
EL10As15g24106 Beta vulgaris HOM05D000729 ORTHO05D001063 1.4e-19 99.8 134 50.7
CSS0015256 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 3.0e-19 98.6 68 80.9
Eucgr.J02732 Eucalyptus grandis HOM05D000729 ORTHO05D001063 5.2e-19 97.8 54 87.0
CSS0022865 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 5.7e-18 94.4 64 79.7
Nitab4.5_0027450g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 7.5e-18 94.0 76 72.4
SEGI_37255 Sequoiadendron giganteum HOM05D000729 ORTHO05D001063 1.7e-17 92.8 56 80.4
Solyc09g055840.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 2.8e-17 92.0 57 86.0
Nitab4.5_0001761g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 4.8e-17 91.3 69 78.3
Nn241s45687 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.4e-16 89.7 51 90.2
Solyc12g027820.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.4e-16 89.7 57 86.0
Glyma.01G201500 Glycine max HOM05D000729 ORTHO05D001063 9.1e-16 87.0 57 82.5
Lalb_Chr04g0260201 Lupinus albus HOM05D000729 ORTHO05D001063 1.0e-14 83.6 71 64.8
EL10As15g24115 Beta vulgaris HOM05D000729 ORTHO05D001063 5.0e-14 81.3 57 77.2
Nitab4.5_0005246g0030 Nicotiana tabacum HOM05D000729 ORTHO05D001063 6.5e-14 80.9 74 66.2
Lalb_Chr25g0281841 Lupinus albus HOM05D000729 ORTHO05D001063 1.9e-13 79.3 57 73.7
EL10Ac8g19099 Beta vulgaris HOM05D000729 ORTHO05D001063 2.5e-13 79.0 52 80.8
HanXRQChr02g0059631 Helianthus annuus HOM05D000729 ORTHO05D001063 4.2e-13 78.2 43 86.0
Nitab4.5_0003706g0020 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.6e-12 76.3 64 67.2
Nitab4.5_0000241g0080 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.7e-12 75.5 103 53.4
SMO086G0067 Selaginella moellendorffii HOM05D000729 ORTHO05D001063 2.7e-12 75.5 109 47.7
Sed0019191 Sechium edule HOM05D000729 ORTHO05D001063 3.0e-11 72.0 36 91.7
Migut.D01376 Erythranthe guttata HOM05D000729 ORTHO05D001063 8.3e-09 63.9 49 69.4
Solyc02g011910.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.4e-08 63.2 38 78.9
HanXRQChr00c0747g0577151 Helianthus annuus HOM05D000729 ORTHO05D001063 1.8e-08 62.8 51 70.6
Solyc09g050069.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 3.1e-08 62.0 82 53.7
Hund08789 Selenicereus undatus HOM05D000729 ORTHO05D001063 4.1e-08 61.6 48 75.0
arahy.Tifrunner.gnm1.ann1.HJG1UD Arachis hypogaea HOM05D000729 ORTHO05D001063 7.0e-08 60.8 68 61.8
Nitab4.5_0000149g0250 Nicotiana tabacum HOM05D000729 ORTHO05D013759 9.2e-08 60.5 31 90.3
Solyc01g017160.2 Solanum lycopersicum HOM05D000729 ORTHO05D001063 2.7e-07 58.9 32 81.2
Medtr3g091540 Medicago truncatula HOM05D000729 ORTHO05D001063 1.3e-06 56.6 33 87.9
Nitab4.5_0012558g0030 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.7e-06 56.2 32 78.1
Solyc03g122010.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 8.6e-06 53.9 32 81.2


User provided reference genes

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