Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G153800 Gossypium raimondii HOM05D001234 ORTHO05D001048 3.1e-34 147.9 74 100.0
Gohir.D02G137375 Gossypium hirsutum HOM05D001234 ORTHO05D001048 1.7e-32 142.1 74 95.9
Gohir.A10G236100 Gossypium hirsutum HOM05D001234 ORTHO05D001048 5.6e-28 127.1 66 95.5
Gorai.011G287700 Gossypium raimondii HOM05D001234 ORTHO05D001048 5.6e-28 127.1 66 95.5
Duzib128G1970 Durio zibethinus HOM05D001234 ORTHO05D001048 7.8e-22 106.7 66 80.3
Duzib114G0089 Durio zibethinus HOM05D001234 ORTHO05D001048 5.1e-21 104.0 66 78.8
Gohir.A10G236200 Gossypium hirsutum HOM05D001234 ORTHO05D001048 8.1e-19 96.7 60 83.3
Gohir.D10G248000 Gossypium hirsutum HOM05D001234 ORTHO05D001048 6.9e-18 93.6 60 81.7
Gorai.011G287800 Gossypium raimondii HOM05D001234 ORTHO05D001048 9.0e-18 93.2 60 81.7
Thecc.10G016800 Theobroma cacao HOM05D001234 ORTHO05D001048 2.2e-16 88.6 66 69.7
COL.COLO4_25719 Corchorus olitorius HOM05D001234 ORTHO05D001048 3.5e-14 81.3 61 68.9
Gorai.010G198100 Gossypium raimondii HOM05D001234 ORTHO05D001048 2.3e-13 78.6 68 63.2
Gohir.A06G163700 Gossypium hirsutum HOM05D001234 ORTHO05D001048 3.9e-13 77.8 68 63.2
Gohir.D06G169600 Gossypium hirsutum HOM05D001234 ORTHO05D001048 2.5e-12 75.1 68 61.8
Lj6g0015093 Lotus japonicus HOM05D001234 ORTHO05D001048 6.9e-10 67.0 42 73.8
Psat5g128480 Pisum sativum HOM05D001234 ORTHO05D001048 1.5e-09 65.9 42 73.8
TPR.G16236 Trifolium pratense HOM05D001234 ORTHO05D001048 1.5e-09 65.9 42 73.8
Sed0027235 Sechium edule HOM05D001234 ORTHO05D001048 1.3e-08 62.8 42 69.0
Glyma.11G229700 Glycine max HOM05D001234 ORTHO05D001048 1.7e-08 62.4 42 71.4
Lsat_1_v5_gn_8_70961 Lactuca sativa HOM05D000683 ORTHO05D000507 1.7e-08 62.4 48 62.5
Potri.008G068200 Populus trichocarpa HOM05D001234 ORTHO05D001048 1.7e-08 62.4 50 64.0
Glyma.18G027500 Glycine max HOM05D001234 ORTHO05D001048 2.2e-08 62.0 40 75.0
THA.LOC104810087 Tarenaya hassleriana HOM05D001234 ORTHO05D001048 2.9e-08 61.6 40 72.5
VMungo1383G2559 Vigna mungo HOM05D001234 ORTHO05D001048 2.9e-08 61.6 42 71.4
Atru.chr12.30 Acer truncatum HOM05D001234 ORTHO05D001048 3.8e-08 61.2 40 72.5
Ca_15124_v3 Cicer arietinum L. HOM05D001234 ORTHO05D001048 3.8e-08 61.2 42 69.0
TAR623G0816 Trochodendron aralioides HOM05D001234 ORTHO05D001048 3.8e-08 61.2 42 69.0
Lalb_Chr11g0074961 Lupinus albus HOM05D001234 ORTHO05D001048 4.9e-08 60.8 49 63.3
Manes.07G129600 Manihot esculenta HOM05D001234 ORTHO05D001048 4.9e-08 60.8 42 66.7
SalBow6G5153 Salvia bowleyana HOM05D001234 ORTHO05D001048 4.9e-08 60.8 53 56.6
Medtr3g070490 Medicago truncatula HOM05D001234 ORTHO05D001048 6.5e-08 60.5 71 52.1
Potri.001G251600 Populus trichocarpa HOM05D001234 ORTHO05D001048 6.5e-08 60.5 38 81.6
CsaV3_5G010120 Cucumis sativus L. HOM05D001234 ORTHO05D001048 8.4e-08 60.1 52 61.5
A04p30100 Brassica napus HOM05D001234 ORTHO05D001048 1.1e-07 59.7 40 70.0
BraA04t18497Z Brassica rapa HOM05D001234 ORTHO05D001048 1.1e-07 59.7 40 70.0
CSS0005955 Camellia sinensis var. sinensis HOM05D001234 ORTHO05D001048 1.1e-07 59.7 38 76.3
CARHR135020 Cardamine hirsuta HOM05D001234 ORTHO05D001048 1.1e-07 59.7 40 70.0
Sabra16G0153000 Salix brachista HOM05D001234 ORTHO05D001048 1.1e-07 59.7 38 78.9
Sp4g22370 Schrenkiella parvula HOM05D001234 ORTHO05D001048 1.1e-07 59.7 40 70.0
BcaC02g07349 Brassica carinata HOM05D001234 ORTHO05D001048 1.4e-07 59.3 61 50.8
BcaC02g07391 Brassica carinata HOM05D001234 ORTHO05D001048 1.4e-07 59.3 61 50.8
C04p67760 Brassica napus HOM05D001234 ORTHO05D001048 1.4e-07 59.3 61 50.8
BolC4t28279H Brassica oleracea HOM05D001234 ORTHO05D001048 1.4e-07 59.3 61 50.8
AUR62012247 Chenopodium quinoa HOM05D001234 ORTHO05D001048 1.4e-07 59.3 58 55.2
TWI53G0515 Tripterygium wilfordii HOM05D001234 ORTHO05D001048 1.4e-07 59.3 42 66.7
GSVIVG01032821001 Vitis vinifera HOM05D001234 ORTHO05D001048 1.4e-07 59.3 42 66.7
Aa31LG5G19530 Aethionema arabicum HOM05D001234 ORTHO05D001048 1.9e-07 58.9 61 52.5
BcaC01g05438 Brassica carinata HOM05D001234 ORTHO05D001048 1.9e-07 58.9 61 50.8
A03p22520 Brassica napus HOM05D001234 ORTHO05D001048 1.9e-07 58.9 61 50.8
C03p26670 Brassica napus HOM05D001234 ORTHO05D001048 1.9e-07 58.9 61 50.8
BolC3t15052H Brassica oleracea HOM05D001234 ORTHO05D001048 1.9e-07 58.9 61 50.8
BraA03t11479Z Brassica rapa HOM05D001234 ORTHO05D001048 1.9e-07 58.9 61 50.8
Ciclev10032998m.g Citrus clementina HOM05D001234 ORTHO05D001048 1.9e-07 58.9 64 54.7
THA.LOC104824312 Tarenaya hassleriana HOM05D001234 ORTHO05D001048 1.9e-07 58.9 61 54.1
Eucgr.J00214 Eucalyptus grandis HOM05D001234 ORTHO05D001048 2.5e-07 58.5 48 56.2
Phvul.001G242900 Phaseolus vulgaris HOM05D001234 ORTHO05D001048 2.5e-07 58.5 42 69.0
QL08p063151 Quercus lobata HOM05D001234 ORTHO05D001048 3.2e-07 58.2 38 71.1
Sed0019507 Sechium edule HOM05D001234 ORTHO05D001048 3.2e-07 58.2 38 71.1
AT2G40080 Arabidopsis thaliana HOM05D001234 ORTHO05D001048 4.2e-07 57.8 58 55.2
CSS0018933 Camellia sinensis var. sinensis HOM05D001234 ORTHO05D001048 4.2e-07 57.8 38 73.7
Cfa001321 Carpinus fangiana HOM05D001234 ORTHO05D001048 4.2e-07 57.8 65 50.8
AUR62022878 Chenopodium quinoa HOM05D001234 ORTHO05D001048 4.2e-07 57.8 58 53.4
PGR044G1990 Punica granatum HOM05D001234 ORTHO05D001048 4.2e-07 57.8 49 63.3
BcaB02g09055 Brassica carinata HOM05D001234 ORTHO05D001048 5.5e-07 57.4 61 49.2
A05p06390 Brassica napus HOM05D001234 ORTHO05D001048 5.5e-07 57.4 61 49.2
C04p07390 Brassica napus HOM05D001234 ORTHO05D001048 5.5e-07 57.4 61 49.2
BolC4t22358H Brassica oleracea HOM05D001234 ORTHO05D001048 5.5e-07 57.4 61 49.2
BolC4t22360H Brassica oleracea HOM05D001234 ORTHO05D001048 5.5e-07 57.4 61 49.2
BraA05t19607Z Brassica rapa HOM05D001234 ORTHO05D001048 5.5e-07 57.4 61 49.2
Carub.0004s2222 Capsella rubella HOM05D001234 ORTHO05D001048 5.5e-07 57.4 61 50.8
Eucgr.J00211 Eucalyptus grandis HOM05D001234 ORTHO05D001048 5.5e-07 57.4 44 59.1
Actinidia29699 Actinidia chinensis HOM05D004515 ORTHO05D006013 7.1e-07 57.0 57 56.1
C04p07360 Brassica napus HOM05D001234 ORTHO05D001048 9.3e-07 56.6 66 50.0
Nn2g11503 Nelumbo nucifera HOM05D001234 ORTHO05D001048 9.3e-07 56.6 49 61.2
Sabra06G0050000 Salix brachista HOM05D001234 ORTHO05D001048 9.3e-07 56.6 41 75.6
AL301U10020 Arabidopsis lyrata HOM05D001234 ORTHO05D001048 1.2e-06 56.2 61 52.5
AL4G37700 Arabidopsis lyrata HOM05D001234 ORTHO05D001048 1.2e-06 56.2 61 52.5
BcaNung05463 Brassica carinata HOM05D001234 ORTHO05D001048 1.2e-06 56.2 61 52.5
CiPaw.13G077400 Carya illinoinensis HOM05D001234 ORTHO05D001048 1.2e-06 56.2 61 50.8
Thhalv10017822m.g Eutrema salsugineum HOM05D001234 ORTHO05D001048 1.2e-06 56.2 61 52.5
Potri.009G046400 Populus trichocarpa HOM05D001234 ORTHO05D001048 1.2e-06 56.2 60 53.3
Sabra09G0033600 Salix brachista HOM05D001234 ORTHO05D001048 1.2e-06 56.2 63 50.8
SalBow2G3152 Salvia bowleyana HOM05D001234 ORTHO05D001048 1.2e-06 56.2 38 71.1
CAN.G394.128 Capsicum annuum HOM05D001234 ORTHO05D001048 1.6e-06 55.8 42 64.3
PSO408G0003 Papaver somniferum HOM05D001234 ORTHO05D001048 1.6e-06 55.8 42 59.5
PGSC0003DMG400001221 Solanum tuberosum HOM05D001234 ORTHO05D001048 1.6e-06 55.8 61 50.8
PGSC0003DMG400039436 Solanum tuberosum HOM05D001234 ORTHO05D001048 1.6e-06 55.8 57 52.6
TAR369G0688 Trochodendron aralioides HOM05D001234 ORTHO05D001048 1.6e-06 55.8 49 63.3
Dinv28641 Davidia involucrata HOM05D001234 ORTHO05D001048 2.1e-06 55.5 42 64.3
Eucgr.J01911 Eucalyptus grandis HOM05D001234 ORTHO05D001048 2.1e-06 55.5 38 71.1
HanXRQChr05g0135771 Helianthus annuus HOM05D001234 ORTHO05D001048 2.1e-06 55.5 61 49.2
Nitab4.5_0003931g0050 Nicotiana tabacum HOM05D001234 ORTHO05D001048 2.1e-06 55.5 50 58.0
PSO339G0635 Papaver somniferum HOM05D001234 ORTHO05D001048 2.1e-06 55.5 58 50.0
Sc11g0005070 Simmondsia chinensis HOM05D001234 ORTHO05D001048 2.1e-06 55.5 50 58.0
BcaB01g03591 Brassica carinata HOM05D001234 ORTHO05D001048 2.7e-06 55.1 62 50.0
BcaC01g05439 Brassica carinata HOM05D001234 ORTHO05D001048 2.7e-06 55.1 62 50.0
CAN.G322.124 Capsicum annuum HOM05D001234 ORTHO05D001048 2.7e-06 55.1 42 61.9
CiPaw.01G298200 Carya illinoinensis HOM05D001234 ORTHO05D001048 2.7e-06 55.1 47 57.4
ClCG07G004150 Citrullus lanatus HOM05D001234 ORTHO05D001048 2.7e-06 55.1 38 68.4
MD11G1074300 Malus domestica HOM05D001234 ORTHO05D001048 2.7e-06 55.1 50 56.0
Phvul.008G261200 Phaseolus vulgaris HOM05D001234 ORTHO05D001048 2.7e-06 55.1 47 51.1
Sabra18G0075500 Salix brachista HOM05D001234 ORTHO05D001048 2.7e-06 55.1 41 75.6
Ciclev10029554m.g Citrus clementina HOM05D001234 ORTHO05D001048 3.5e-06 54.7 69 47.8
Peaxi162Scf00540g00425 Petunia axillaris HOM05D001234 ORTHO05D001048 3.5e-06 54.7 42 64.3
PGSC0003DMG400006620 Solanum tuberosum HOM05D001234 ORTHO05D001048 3.5e-06 54.7 57 50.9
Manes.01G161400 Manihot esculenta HOM05D001234 ORTHO05D001048 4.6e-06 54.3 38 68.4
Sabra08G0050100 Salix brachista HOM05D001234 ORTHO05D001048 4.6e-06 54.3 64 48.4
Solyc06g076960.2 Solanum lycopersicum HOM05D001234 ORTHO05D001048 4.6e-06 54.3 48 58.3
Solyc11g028200.1 Solanum lycopersicum HOM05D001234 ORTHO05D001048 4.6e-06 54.3 48 58.3
Sopen06g017630 Solanum pennellii HOM05D001234 ORTHO05D001048 4.6e-06 54.3 50 54.0
Sopen06g033360 Solanum pennellii HOM05D001234 ORTHO05D001048 4.6e-06 54.3 38 71.1
PGSC0003DMG400030357 Solanum tuberosum HOM05D001234 ORTHO05D001048 4.6e-06 54.3 38 71.1
SGA_v2.0_scaffold76G25099 Striga asiatica HOM05D001234 ORTHO05D001048 4.6e-06 54.3 57 50.9
Aqoxy4G02561 Aquilegia oxysepala HOM05D001234 ORTHO05D001048 6.0e-06 53.9 36 72.2
MSTRG.8327 Avicennia marina HOM05D001234 ORTHO05D001048 6.0e-06 53.9 62 50.0
AUR62012246 Chenopodium quinoa HOM05D001234 ORTHO05D001048 6.0e-06 53.9 52 51.9
Hma1.2p1_0281F.1_g113040 Hydrangea macrophylla HOM05D001234 ORTHO05D001048 6.0e-06 53.9 36 72.2
Hma1.2p1_1978F.1_g309800 Hydrangea macrophylla HOM05D001234 ORTHO05D001048 6.0e-06 53.9 36 72.2
Nitab4.5_0001806g0040 Nicotiana tabacum HOM05D001234 ORTHO05D001048 6.0e-06 53.9 57 59.6
Sopen06g017640 Solanum pennellii HOM05D001234 ORTHO05D001048 6.0e-06 53.9 60 48.3
EL10Ac2g04827 Beta vulgaris HOM05D001234 ORTHO05D001048 7.9e-06 53.5 56 48.2
Cc01_g14200 Coffea canephora HOM05D001234 ORTHO05D001048 7.9e-06 53.5 38 68.4
Solyc06g051660.1 Solanum lycopersicum HOM05D001234 ORTHO05D001048 7.9e-06 53.5 50 54.0


User provided reference genes

Program Settings