Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 2.1e-158 562.4 296 100.0
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 5.2e-149 531.2 295 95.6
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 1.6e-129 466.5 295 84.4
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 4.3e-127 458.4 300 81.7
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 2.0e-124 449.5 311 79.7
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 8.3e-115 417.5 270 79.6
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 1.4e-114 416.8 255 82.0
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 1.7e-112 409.8 260 80.4
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 1.1e-111 407.1 294 75.2
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 1.1e-111 407.1 290 73.8
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 1.9e-111 406.4 260 80.4
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 2.5e-111 406.0 260 80.8
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 3.3e-111 405.6 258 79.5
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 9.5e-111 404.1 250 81.6
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 2.8e-110 402.5 277 75.5
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 3.6e-110 402.1 270 76.7
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 3.6e-110 402.1 246 80.9
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 4.7e-110 401.7 302 70.5
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 4.7e-110 401.7 303 69.6
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 4.7e-110 401.7 270 78.5
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 1.1e-109 400.6 271 76.0
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 2.3e-109 399.4 304 69.7
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 5.2e-109 398.3 264 76.5
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 1.2e-108 397.1 259 78.8
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 1.5e-108 396.7 270 77.0
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.0e-108 396.4 265 77.7
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 2.0e-108 396.4 282 73.4
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 2.6e-108 396.0 294 71.8
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 3.4e-108 395.6 247 79.8
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 7.5e-108 394.4 295 71.9
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 7.5e-108 394.4 270 75.6
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 2.2e-107 392.9 255 77.6
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 2.9e-107 392.5 281 74.7
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 2.9e-107 392.5 298 72.1
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 2.9e-107 392.5 260 77.3
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 2.9e-107 392.5 299 70.2
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 2.9e-107 392.5 260 76.5
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 4.9e-107 391.7 294 70.1
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 6.4e-107 391.3 294 71.1
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 8.3e-107 391.0 290 71.0
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 1.1e-106 390.6 240 82.5
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 1.1e-106 390.6 277 72.2
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 2.4e-106 389.4 257 77.0
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 5.4e-106 388.3 289 71.3
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 7.1e-106 387.9 302 68.9
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 7.1e-106 387.9 294 69.4
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 1.6e-105 386.7 285 71.6
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 3.5e-105 385.6 301 68.8
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 3.5e-105 385.6 295 70.2
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 6.0e-105 384.8 295 68.5
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 6.0e-105 384.8 258 77.9
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 7.8e-105 384.4 269 74.3
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.7e-104 383.3 280 70.7
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 1.7e-104 383.3 248 79.4
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 2.3e-104 382.9 289 70.9
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 3.0e-104 382.5 253 76.3
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 3.9e-104 382.1 285 69.1
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 3.9e-104 382.1 198 99.5
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 5.1e-104 381.7 258 76.4
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 1.1e-103 380.6 308 67.9
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.1e-103 380.6 257 75.5
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 3.3e-103 379.0 289 70.2
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 5.6e-103 378.3 294 69.0
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 7.3e-103 377.9 290 71.0
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.2e-102 377.1 289 68.9
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 2.8e-102 375.9 257 73.9
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 4.7e-102 375.2 281 70.1
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 6.2e-102 374.8 280 69.3
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 6.2e-102 374.8 260 73.1
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 3.1e-101 372.5 285 70.5
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 5.2e-101 371.7 272 70.2
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 8.9e-101 370.9 223 82.1
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 1.2e-100 370.5 260 72.7
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 1.3e-99 367.1 280 66.8
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 1.7e-99 366.7 258 72.1
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 6.4e-99 364.8 268 72.4
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.6e-97 360.1 226 80.5
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 2.1e-97 359.8 260 71.9
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 3.5e-97 359.0 257 74.3
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 4.6e-97 358.6 278 68.0
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 6.0e-97 358.2 255 72.2
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 6.0e-97 358.2 268 69.4
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 5.6e-95 351.7 239 75.7
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.2e-94 350.5 238 74.8
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 2.1e-94 349.7 265 68.3
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 4.0e-93 345.5 288 65.6
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 6.9e-93 344.7 261 72.4
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 1.7e-91 340.1 254 70.1
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 1.9e-90 336.7 259 68.3
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 9.3e-90 334.3 244 70.1
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 1.3e-88 330.5 251 70.1
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 6.2e-86 321.6 213 74.6
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 8.1e-86 321.2 223 74.0
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 2.2e-83 313.2 280 62.1
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 8.4e-83 311.2 197 76.6
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.1e-82 310.8 291 61.9
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 1.0e-80 304.3 196 77.0
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 3.9e-80 302.4 296 59.8
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 6.7e-80 301.6 354 53.4
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 4.3e-79 298.9 225 71.1
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 4.0e-77 292.4 195 75.9
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 1.3e-75 287.3 172 83.1
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 2.2e-75 286.6 368 49.5
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 1.2e-73 280.8 233 64.4
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.1e-71 274.2 174 79.3
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 1.3e-67 260.8 240 57.5
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 4.1e-61 239.2 237 49.4
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 5.3e-61 238.8 236 52.5
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 9.0e-61 238.0 229 52.4
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 4.5e-60 235.7 223 57.8
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 9.7e-55 218.0 199 60.3
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 1.6e-54 217.2 330 43.0
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.0e-48 198.0 167 58.7
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 1.7e-43 180.6 272 45.6
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.1e-41 172.2 141 69.5
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 9.4e-34 148.3 91 78.0
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 2.7e-33 146.7 119 66.4
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 2.0e-31 140.6 141 58.2
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 2.0e-28 130.6 141 54.6
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 2.7e-25 120.2 141 51.8
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 1.8e-24 117.5 73 82.2
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-23 114.0 89 61.8
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.0e-23 114.0 166 42.2
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 1.3e-22 111.3 140 48.6
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.8e-21 107.5 78 66.7
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 2.0e-20 104.0 74 71.6
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 9.5e-18 95.1 198 38.4
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 9.5e-18 95.1 210 37.1
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 1.6e-17 94.4 59 78.0
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 4.7e-17 92.8 198 36.9
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 3.0e-16 90.1 102 52.0
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 4.0e-16 89.7 251 28.3
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 2.0e-15 87.4 51 82.4
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 2.0e-15 87.4 57 71.9
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 5.7e-15 85.9 55 72.7
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 5.7e-15 85.9 55 72.7
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 6.3e-14 82.4 93 52.7
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 8.3e-14 82.0 50 80.0
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 7.0e-13 79.0 89 53.9
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 9.2e-13 78.6 93 50.5
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 9.2e-13 78.6 59 59.3
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 1.0e-11 75.1 56 67.9
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 1.5e-10 71.2 83 50.6
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 4.3e-10 69.7 212 24.5
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 2.1e-09 67.4 249 24.5
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 2.3e-08 63.9 236 28.4
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 1.2e-07 61.6 224 22.8
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 1.2e-07 61.6 212 22.6
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 1.5e-07 61.2 225 23.6
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 2.0e-07 60.8 216 22.2
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 2.6e-07 60.5 228 22.8
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.6e-07 60.5 97 43.3
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 9.8e-07 58.5 214 22.9
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 1.7e-06 57.8 215 21.9
SGA_v2.0_scaffold467G52044 Striga asiatica HOM05D000074 ORTHO05D006342 6.4e-06 55.8 43 65.1


User provided reference genes

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