Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.4e-41 172.6 90 100.0
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.4e-41 171.8 90 98.9
Gohir.A03G101000 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.9e-33 145.6 90 87.8
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 2.1e-21 105.5 97 63.9
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 2.6e-19 98.6 97 60.8
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.8e-18 94.7 90 60.0
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.4e-17 92.8 90 60.0
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.4e-17 92.8 90 60.0
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.4e-17 92.0 92 56.5
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.7e-16 88.6 92 55.4
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.3e-15 86.3 92 54.3
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.9e-14 82.4 96 52.1
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.5e-14 82.0 97 53.6
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 9.6e-14 80.1 95 51.6
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.2e-13 79.7 97 53.6
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 1.6e-13 79.3 95 51.6
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 2.1e-13 79.0 95 51.6
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.1e-13 79.0 97 53.6
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 2.8e-13 78.6 95 51.6
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 6.9e-12 73.9 93 47.3
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 6.9e-12 73.9 93 47.3
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 1.5e-11 72.8 93 46.2
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.6e-11 72.0 96 49.0
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 7.6e-11 70.5 95 45.3
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 9.9e-11 70.1 93 41.9
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 1.3e-10 69.7 104 43.3
COL.COLO4_23015 Corchorus olitorius HOM05D007096 ORTHO05D008288 2.2e-10 68.9 74 58.1
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 2.2e-10 68.9 91 50.5
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 4.9e-10 67.8 95 44.2
Sed0016779 Sechium edule HOM05D007096 ORTHO05D008288 6.4e-10 67.4 91 48.4
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 8.4e-10 67.0 94 42.6
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 1.4e-09 66.2 97 44.3
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.4e-09 66.2 96 42.7
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 4.2e-09 64.7 91 46.2
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 4.2e-09 64.7 95 44.2
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 4.2e-09 64.7 89 43.8
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 7.1e-09 63.9 98 48.0
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 1.2e-08 63.2 89 48.3
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 1.2e-08 63.2 96 39.6
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.7e-08 62.0 87 49.4
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 6.0e-08 60.8 80 47.5
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 7.8e-08 60.5 94 39.4
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 2.3e-07 58.9 95 41.1
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 2.3e-07 58.9 90 46.7
Lalb_Chr10g0098271 Lupinus albus HOM05D015099 ORTHO05D008288 3.0e-07 58.5 92 37.0
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 3.0e-07 58.5 92 39.1
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 3.9e-07 58.2 94 37.2
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 3.9e-07 58.2 88 42.0
Oeu054876.1 Olea europaea HOM05D007096 ORTHO05D008288 6.6e-07 57.4 98 39.8
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 8.7e-07 57.0 93 36.6
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 4.3e-06 54.7 89 40.4
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 4.3e-06 54.7 96 42.7
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 5.6e-06 54.3 91 40.7
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 5.6e-06 54.3 79 41.8
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 7.3e-06 53.9 87 42.5
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 7.3e-06 53.9 79 41.8


User provided reference genes

Program Settings